Wall clock time and date at job start Fri Apr 10 2020 20:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99557 * 2 1 4 4 H 1.48503 * 109.47218 * 270.00172 * 3 2 1 5 5 H 1.48494 * 109.47424 * 30.00132 * 3 2 1 6 6 H 1.48506 * 109.47250 * 150.00400 * 3 2 1 7 7 C 1.37873 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99580 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00278 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47463 * 185.37673 * 9 7 2 11 11 C 1.46892 * 111.00367 * 184.01209 * 10 9 7 12 12 C 1.50702 * 109.47470 * 169.99358 * 11 10 9 13 13 C 1.38718 * 119.75737 * 90.00217 * 12 11 10 14 14 C 1.37689 * 120.42220 * 179.70691 * 13 12 11 15 15 C 1.39585 * 119.72589 * 0.02562 * 14 13 12 16 16 N 1.36065 * 133.80138 * 180.02562 * 15 14 13 17 17 C 1.29905 * 108.79980 * 180.02562 * 16 15 14 18 18 O 1.34236 * 110.28762 * 359.97438 * 17 16 15 19 19 C 1.35112 * 108.16235 * 0.02562 * 18 17 16 20 20 C 1.37911 * 119.76392 * 269.72704 * 12 11 10 21 21 C 1.46899 * 111.00272 * 60.05156 * 10 9 7 22 22 C 1.54267 * 110.02753 * 32.04028 * 21 10 9 23 23 C 1.54966 * 104.15754 * 217.12977 * 22 21 10 24 24 C 1.54889 * 102.77594 * 37.88910 * 23 22 21 25 25 C 1.53865 * 110.03752 * 274.82142 * 21 10 9 26 26 H 0.96995 * 120.00432 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47176 * 65.37287 * 9 7 2 28 28 H 1.09002 * 109.46899 * 305.37433 * 9 7 2 29 29 H 1.09003 * 109.47120 * 49.99827 * 11 10 9 30 30 H 1.08990 * 109.47518 * 289.99948 * 11 10 9 31 31 H 1.08005 * 119.79220 * 359.72603 * 13 12 11 32 32 H 1.07991 * 120.13593 * 180.02562 * 14 13 12 33 33 H 1.07999 * 124.85867 * 180.02562 * 17 16 15 34 34 H 1.07995 * 120.05953 * 0.25636 * 20 12 11 35 35 H 1.09005 * 110.01719 * 153.42576 * 21 10 9 36 36 H 1.09003 * 110.48888 * 335.77451 * 22 21 10 37 37 H 1.09000 * 110.49097 * 98.42179 * 22 21 10 38 38 H 1.08995 * 110.72878 * 279.57222 * 23 22 21 39 39 H 1.09009 * 110.92118 * 156.29416 * 23 22 21 40 40 H 1.09004 * 110.48617 * 203.39906 * 24 23 22 41 41 H 1.09003 * 110.60286 * 80.81687 * 24 23 22 42 42 H 1.09000 * 110.03246 * 238.56830 * 25 21 10 43 43 H 1.09002 * 110.03378 * 359.94622 * 25 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2005 -3.6126 0.1286 11 6 1.5105 -4.9061 0.0369 12 6 2.5285 -6.0119 -0.0739 13 6 3.0176 -6.6150 1.0756 14 6 3.9434 -7.6306 0.9901 15 6 4.3922 -8.0545 -0.2618 16 7 5.2747 -9.0046 -0.6738 17 6 5.3295 -8.9905 -1.9716 18 8 4.5041 -8.0525 -2.4621 19 6 3.8960 -7.4410 -1.4220 20 6 2.9628 -6.4206 -1.3173 21 6 2.9643 -3.5109 1.3793 22 6 2.0972 -2.8597 2.4765 23 6 3.0920 -1.9767 3.2716 24 6 4.0156 -1.4166 2.1615 25 6 4.1837 -2.5941 1.1793 26 1 -0.4850 0.8400 0.0004 27 1 0.6983 -2.5995 -0.9345 28 1 0.5546 -2.5165 0.8377 29 1 0.8686 -4.9138 -0.8441 30 1 0.9041 -5.0586 0.9295 31 1 2.6697 -6.2862 2.0438 32 1 4.3208 -8.0972 1.8879 33 1 5.9498 -9.6411 -2.5703 34 1 2.5772 -5.9466 -2.2078 35 1 3.2899 -4.5008 1.6992 36 1 1.3149 -2.2456 2.0302 37 1 1.6626 -3.6226 3.1224 38 1 3.6609 -2.5787 3.9801 39 1 2.5708 -1.1685 3.7848 40 1 4.9802 -1.1265 2.5781 41 1 3.5457 -0.5684 1.6634 42 1 5.1010 -3.1388 1.4029 43 1 4.2094 -2.2253 0.1539 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232942441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:45 Heat of formation + Delta-G solvation = 61.515353 kcal Electronic energy + Delta-G solvation = -24855.242193 eV Core-core repulsion = 21481.557738 eV Total energy + Delta-G solvation = -3373.684455 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.19255 -39.24803 -37.74722 -34.94188 -34.04266 -32.62402 -30.71636 -30.25948 -28.04597 -27.42290 -26.84741 -24.45810 -23.48461 -22.07632 -21.75945 -21.45495 -19.83629 -18.29603 -17.87595 -17.40741 -16.73019 -16.62505 -15.62391 -15.19940 -15.01745 -14.47369 -14.23852 -13.96010 -13.88266 -13.49042 -13.14633 -12.72700 -12.44433 -12.26356 -11.93555 -11.76730 -11.44770 -11.36915 -11.17790 -10.99126 -10.81861 -10.47767 -10.47112 -10.39005 -10.25527 -10.17096 -9.85749 -9.47812 -9.30834 -8.87016 -8.68801 -8.43847 -8.31727 -7.19404 -6.03720 -4.01408 0.74490 1.29429 2.44754 2.59815 3.29483 3.37079 3.38322 3.67977 3.90628 4.41297 4.56483 4.86610 4.98245 5.12559 5.22567 5.27949 5.32402 5.40615 5.45365 5.50668 5.76006 5.81751 5.92704 6.03374 6.06731 6.13618 6.26420 6.28579 6.31910 6.37588 6.43885 6.54488 6.63314 6.68040 6.69418 6.71634 6.80133 7.00754 7.02936 7.28683 7.40741 7.54941 7.55782 7.88656 8.07587 8.17302 8.53774 9.05762 9.60788 11.07669 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.021942 B = 0.004073 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.777390 B = 6873.484622 C = 7224.836228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.057 3.943 3 Si 0.883 3.117 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.507 4.507 8 H 0.085 0.915 9 C 0.185 3.815 10 N -0.526 5.526 11 C 0.087 3.913 12 C -0.029 4.029 13 C -0.112 4.112 14 C -0.064 4.064 15 C 0.007 3.993 16 N -0.485 5.485 17 C 0.217 3.783 18 O -0.219 6.219 19 C 0.013 3.987 20 C -0.077 4.077 21 C 0.091 3.909 22 C -0.166 4.166 23 C -0.111 4.111 24 C -0.127 4.127 25 C -0.104 4.104 26 H 0.259 0.741 27 H 0.025 0.975 28 H 0.010 0.990 29 H 0.081 0.919 30 H 0.040 0.960 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.252 0.748 34 H 0.137 0.863 35 H 0.062 0.938 36 H 0.118 0.882 37 H 0.037 0.963 38 H 0.045 0.955 39 H 0.054 0.946 40 H 0.040 0.960 41 H 0.090 0.910 42 H 0.037 0.963 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.677 -13.888 0.640 15.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.144 4.144 3 Si 0.711 3.289 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.546 4.546 8 H 0.103 0.897 9 C 0.061 3.939 10 N -0.249 5.249 11 C -0.041 4.041 12 C -0.030 4.030 13 C -0.131 4.131 14 C -0.083 4.083 15 C -0.104 4.104 16 N -0.214 5.214 17 C -0.014 4.014 18 O -0.110 6.110 19 C -0.037 4.037 20 C -0.096 4.096 21 C -0.018 4.018 22 C -0.205 4.205 23 C -0.149 4.149 24 C -0.164 4.164 25 C -0.142 4.142 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.027 0.973 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.267 0.733 34 H 0.155 0.845 35 H 0.080 0.920 36 H 0.136 0.864 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.108 0.892 42 H 0.056 0.944 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.167 -14.111 0.633 15.839 hybrid contribution -0.360 1.200 0.155 1.262 sum 6.807 -12.911 0.787 14.617 Atomic orbital electron populations 1.69946 1.05966 1.26576 1.51501 1.24928 0.94693 0.98923 0.95837 0.86751 0.80044 0.83895 0.78173 1.20805 1.21463 1.19395 1.21621 0.94693 0.89349 1.48899 0.89741 1.19944 0.90446 0.87431 0.96112 1.62505 1.27694 1.00648 1.34093 1.21049 0.92777 0.88776 1.01454 1.19839 0.96609 0.95290 0.91230 1.21031 0.97451 0.95773 0.98863 1.20209 0.96807 0.96705 0.94556 1.19776 0.98650 0.96775 0.95152 1.70557 1.19172 1.20830 1.10882 1.28142 0.92590 0.90636 0.90044 1.84516 1.48067 1.43018 1.35406 1.20327 0.99398 0.98751 0.85210 1.19737 0.96280 0.94604 0.99022 1.22186 0.94050 0.97235 0.88345 1.23314 1.00754 0.99329 0.97055 1.22245 0.97279 0.98416 0.96911 1.22553 0.97615 0.99908 0.96317 1.22194 0.95200 0.95501 1.01296 0.93084 0.95712 0.97278 0.90077 0.94169 0.84695 0.85019 0.73271 0.84494 0.92041 0.86413 0.94438 0.93581 0.92733 0.94151 0.89176 0.94414 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.22 13.29 55.43 0.74 -24.48 16 2 C 0.06 1.50 5.46 -17.82 -0.10 1.41 16 3 Si 0.88 20.61 28.62 -169.99 -4.86 15.75 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.06 6.68 56.52 0.38 -5.68 16 7 C -0.51 -12.74 5.83 -34.44 -0.20 -12.95 16 8 H 0.08 2.09 3.28 -52.49 -0.17 1.91 16 9 C 0.19 4.34 4.20 -4.98 -0.02 4.32 16 10 N -0.53 -10.27 4.37 -228.19 -1.00 -11.27 16 11 C 0.09 1.43 5.10 -4.98 -0.03 1.40 16 12 C -0.03 -0.42 5.01 -104.56 -0.52 -0.95 16 13 C -0.11 -1.50 7.92 -39.60 -0.31 -1.81 16 14 C -0.06 -0.85 10.10 -39.28 -0.40 -1.25 16 15 C 0.01 0.11 7.24 -84.71 -0.61 -0.50 16 16 N -0.49 -6.60 11.34 -12.54 -0.14 -6.74 16 17 C 0.22 2.25 13.13 51.95 0.68 2.93 16 18 O -0.22 -2.86 10.77 3.61 0.04 -2.82 16 19 C 0.01 0.19 7.43 -38.64 -0.29 -0.10 16 20 C -0.08 -1.14 9.70 -39.54 -0.38 -1.52 16 21 C 0.09 1.66 2.71 -66.60 -0.18 1.48 16 22 C -0.17 -3.13 5.73 -25.03 -0.14 -3.27 16 23 C -0.11 -1.95 6.91 -24.70 -0.17 -2.12 16 24 C -0.13 -2.38 6.18 -25.07 -0.16 -2.54 16 25 C -0.10 -1.96 5.64 -25.62 -0.14 -2.11 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.02 0.63 8.05 -51.93 -0.42 0.22 16 28 H 0.01 0.24 5.78 -51.93 -0.30 -0.06 16 29 H 0.08 1.30 7.95 -51.93 -0.41 0.89 16 30 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 31 H 0.14 1.62 7.33 -52.48 -0.38 1.24 16 32 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.25 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.06 1.03 4.65 -51.93 -0.24 0.78 16 36 H 0.12 2.65 4.11 -51.93 -0.21 2.44 16 37 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.95 4.56 -51.93 -0.24 1.71 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.82 5.84 -51.93 -0.30 1.52 16 LS Contribution 330.37 15.07 4.98 4.98 Total: -1.00 -29.35 330.37 -8.87 -38.22 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.64 Total: 3.94 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -2.97 Total: -17.57 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -0.40 Total: -42.49 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.86 Total: 15.75 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.35 -8.87 -38.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232942441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.735 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds