Wall clock time and date at job start Fri Apr 10 2020 20:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99557 * 2 1 4 4 H 1.48503 * 109.47218 * 270.00172 * 3 2 1 5 5 H 1.48494 * 109.47424 * 30.00132 * 3 2 1 6 6 H 1.48506 * 109.47250 * 150.00400 * 3 2 1 7 7 C 1.37873 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99580 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00278 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47463 * 185.37673 * 9 7 2 11 11 C 1.46892 * 111.00367 * 184.01209 * 10 9 7 12 12 C 1.50702 * 109.47470 * 169.99358 * 11 10 9 13 13 C 1.38718 * 119.75737 * 90.00217 * 12 11 10 14 14 C 1.37689 * 120.42220 * 179.70691 * 13 12 11 15 15 C 1.39585 * 119.72589 * 0.02562 * 14 13 12 16 16 N 1.36065 * 133.80138 * 180.02562 * 15 14 13 17 17 C 1.29905 * 108.79980 * 180.02562 * 16 15 14 18 18 O 1.34236 * 110.28762 * 359.97438 * 17 16 15 19 19 C 1.35112 * 108.16235 * 0.02562 * 18 17 16 20 20 C 1.37911 * 119.76392 * 269.72704 * 12 11 10 21 21 C 1.46899 * 111.00272 * 60.05156 * 10 9 7 22 22 C 1.54267 * 110.02753 * 32.04028 * 21 10 9 23 23 C 1.54966 * 104.15754 * 217.12977 * 22 21 10 24 24 C 1.54889 * 102.77594 * 37.88910 * 23 22 21 25 25 C 1.53865 * 110.03752 * 274.82142 * 21 10 9 26 26 H 0.96995 * 120.00432 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47176 * 65.37287 * 9 7 2 28 28 H 1.09002 * 109.46899 * 305.37433 * 9 7 2 29 29 H 1.09003 * 109.47120 * 49.99827 * 11 10 9 30 30 H 1.08990 * 109.47518 * 289.99948 * 11 10 9 31 31 H 1.08005 * 119.79220 * 359.72603 * 13 12 11 32 32 H 1.07991 * 120.13593 * 180.02562 * 14 13 12 33 33 H 1.07999 * 124.85867 * 180.02562 * 17 16 15 34 34 H 1.07995 * 120.05953 * 0.25636 * 20 12 11 35 35 H 1.09005 * 110.01719 * 153.42576 * 21 10 9 36 36 H 1.09003 * 110.48888 * 335.77451 * 22 21 10 37 37 H 1.09000 * 110.49097 * 98.42179 * 22 21 10 38 38 H 1.08995 * 110.72878 * 279.57222 * 23 22 21 39 39 H 1.09009 * 110.92118 * 156.29416 * 23 22 21 40 40 H 1.09004 * 110.48617 * 203.39906 * 24 23 22 41 41 H 1.09003 * 110.60286 * 80.81687 * 24 23 22 42 42 H 1.09000 * 110.03246 * 238.56830 * 25 21 10 43 43 H 1.09002 * 110.03378 * 359.94622 * 25 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2005 -3.6126 0.1286 11 6 1.5105 -4.9061 0.0369 12 6 2.5285 -6.0119 -0.0739 13 6 3.0176 -6.6150 1.0756 14 6 3.9434 -7.6306 0.9901 15 6 4.3922 -8.0545 -0.2618 16 7 5.2747 -9.0046 -0.6738 17 6 5.3295 -8.9905 -1.9716 18 8 4.5041 -8.0525 -2.4621 19 6 3.8960 -7.4410 -1.4220 20 6 2.9628 -6.4206 -1.3173 21 6 2.9643 -3.5109 1.3793 22 6 2.0972 -2.8597 2.4765 23 6 3.0920 -1.9767 3.2716 24 6 4.0156 -1.4166 2.1615 25 6 4.1837 -2.5941 1.1793 26 1 -0.4850 0.8400 0.0004 27 1 0.6983 -2.5995 -0.9345 28 1 0.5546 -2.5165 0.8377 29 1 0.8686 -4.9138 -0.8441 30 1 0.9041 -5.0586 0.9295 31 1 2.6697 -6.2862 2.0438 32 1 4.3208 -8.0972 1.8879 33 1 5.9498 -9.6411 -2.5703 34 1 2.5772 -5.9466 -2.2078 35 1 3.2899 -4.5008 1.6992 36 1 1.3149 -2.2456 2.0302 37 1 1.6626 -3.6226 3.1224 38 1 3.6609 -2.5787 3.9801 39 1 2.5708 -1.1685 3.7848 40 1 4.9802 -1.1265 2.5781 41 1 3.5457 -0.5684 1.6634 42 1 5.1010 -3.1388 1.4029 43 1 4.2094 -2.2253 0.1539 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232942441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:44 Heat of formation + Delta-G solvation = 42.300364 kcal Electronic energy + Delta-G solvation = -24856.075417 eV Core-core repulsion = 21481.557738 eV Total energy + Delta-G solvation = -3374.517679 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.17001 -40.65745 -38.95979 -36.08484 -35.40625 -34.52355 -31.82651 -31.48394 -29.54418 -29.17042 -28.20045 -25.86829 -24.58378 -23.73416 -22.80718 -22.65602 -21.30765 -19.82173 -19.01507 -18.56570 -18.30412 -17.63158 -16.87324 -16.77496 -16.45733 -16.11196 -15.48627 -15.27466 -14.97032 -14.85167 -14.64104 -14.23937 -13.89940 -13.54795 -13.39636 -13.15588 -12.92601 -12.77558 -12.63632 -12.39247 -12.33454 -12.13958 -11.92817 -11.74972 -11.61063 -11.59253 -11.46043 -11.08507 -10.93706 -10.63517 -10.47250 -9.76596 -9.40546 -8.79490 -8.07565 -6.09025 -0.25485 0.22515 1.41582 1.44216 1.48914 1.52258 1.67373 2.45936 2.60518 3.11187 3.28226 3.46656 3.55094 3.80617 3.96839 4.00096 4.09278 4.19491 4.26208 4.34030 4.39448 4.57489 4.69131 4.77938 4.82243 4.89407 4.96124 4.98207 5.00864 5.05189 5.17057 5.21683 5.24442 5.27319 5.31283 5.34701 5.41502 5.52686 5.60841 5.66721 5.76405 5.87691 5.94194 6.23148 6.47600 6.60330 6.78771 7.06924 7.57038 9.04239 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.021942 B = 0.004073 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.777390 B = 6873.484622 C = 7224.836228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.009 3.991 3 Si 0.935 3.065 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.255 1.255 7 C -0.499 4.499 8 H 0.091 0.909 9 C 0.200 3.800 10 N -0.532 5.532 11 C 0.091 3.909 12 C -0.039 4.039 13 C -0.108 4.108 14 C -0.066 4.066 15 C -0.003 4.003 16 N -0.518 5.518 17 C 0.243 3.757 18 O -0.228 6.228 19 C -0.008 4.008 20 C -0.084 4.084 21 C 0.091 3.909 22 C -0.165 4.165 23 C -0.106 4.106 24 C -0.128 4.128 25 C -0.103 4.103 26 H 0.257 0.743 27 H -0.006 1.006 28 H -0.008 1.008 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.307 0.693 34 H 0.134 0.866 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.091 -15.648 1.524 18.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.188 4.188 3 Si 0.762 3.238 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.179 1.179 7 C -0.537 4.537 8 H 0.108 0.892 9 C 0.075 3.925 10 N -0.256 5.256 11 C -0.037 4.037 12 C -0.040 4.040 13 C -0.127 4.127 14 C -0.084 4.084 15 C -0.113 4.113 16 N -0.247 5.247 17 C 0.013 3.987 18 O -0.119 6.119 19 C -0.058 4.058 20 C -0.103 4.103 21 C -0.017 4.017 22 C -0.203 4.203 23 C -0.144 4.144 24 C -0.166 4.166 25 C -0.141 4.141 26 H 0.065 0.935 27 H 0.012 0.988 28 H 0.009 0.991 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.170 0.830 32 H 0.171 0.829 33 H 0.322 0.678 34 H 0.152 0.848 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.605 -15.885 1.525 18.626 hybrid contribution -1.038 1.585 -0.198 1.905 sum 8.567 -14.300 1.327 16.723 Atomic orbital electron populations 1.70074 1.07413 1.26947 1.53568 1.25598 0.95226 1.01903 0.96093 0.85916 0.79523 0.80442 0.77950 1.20970 1.21810 1.17862 1.21938 0.95032 0.89972 1.46748 0.89185 1.19598 0.90487 0.88672 0.93767 1.62362 1.27029 1.00863 1.35296 1.21004 0.93302 0.87813 1.01545 1.19627 0.97006 0.95393 0.91992 1.21153 0.97096 0.95543 0.98917 1.20461 0.96452 0.96478 0.95034 1.20124 0.98708 0.96908 0.95577 1.70590 1.20151 1.21533 1.12447 1.29468 0.90556 0.88918 0.89776 1.84533 1.48499 1.43593 1.35309 1.20394 1.00105 0.99353 0.85963 1.19767 0.96572 0.94932 0.99075 1.22276 0.93546 0.98374 0.87492 1.23191 1.00063 0.99512 0.97575 1.22247 0.96861 0.98382 0.96861 1.22508 0.98720 0.98769 0.96597 1.22167 0.96404 0.95828 0.99705 0.93455 0.98821 0.99056 0.90669 0.93463 0.83003 0.82911 0.67809 0.84805 0.89609 0.90546 0.92430 0.90487 0.93289 0.91886 0.92418 0.92161 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.54 13.29 21.45 0.28 -54.25 16 2 C 0.01 0.47 5.46 84.65 0.46 0.93 16 3 Si 0.93 43.03 28.62 68.60 1.96 45.00 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.25 -11.01 6.68 99.48 0.66 -10.34 16 7 C -0.50 -25.70 5.83 25.60 0.15 -25.55 16 8 H 0.09 4.51 3.28 -2.91 -0.01 4.50 16 9 C 0.20 9.77 4.20 85.56 0.36 10.13 16 10 N -0.53 -20.95 4.37 -875.87 -3.82 -24.78 16 11 C 0.09 2.98 5.10 85.56 0.44 3.42 16 12 C -0.04 -1.13 5.01 -19.83 -0.10 -1.23 16 13 C -0.11 -2.66 7.92 22.25 0.18 -2.48 16 14 C -0.07 -1.60 10.10 22.46 0.23 -1.37 16 15 C 0.00 -0.08 7.24 39.32 0.28 0.21 16 16 N -0.52 -12.77 11.34 -308.41 -3.50 -16.26 16 17 C 0.24 4.26 13.13 130.53 1.71 5.97 16 18 O -0.23 -5.51 10.77 -9.99 -0.11 -5.61 16 19 C -0.01 -0.23 7.43 22.88 0.17 -0.06 16 20 C -0.08 -2.45 9.70 22.30 0.22 -2.24 16 21 C 0.09 3.22 2.71 45.64 0.12 3.35 16 22 C -0.17 -6.03 5.73 31.70 0.18 -5.85 16 23 C -0.11 -3.50 6.91 31.91 0.22 -3.28 16 24 C -0.13 -4.61 6.18 31.67 0.20 -4.42 16 25 C -0.10 -3.72 5.64 31.31 0.18 -3.54 16 26 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 27 H -0.01 -0.34 8.05 -2.39 -0.02 -0.36 16 28 H -0.01 -0.42 5.78 -2.39 -0.01 -0.43 16 29 H 0.07 2.51 7.95 -2.39 -0.02 2.49 16 30 H 0.05 1.48 8.06 -2.39 -0.02 1.46 16 31 H 0.15 3.17 7.33 -2.91 -0.02 3.15 16 32 H 0.15 2.99 8.06 -2.92 -0.02 2.97 16 33 H 0.31 1.09 8.06 -2.91 -0.02 1.06 16 34 H 0.13 3.84 8.06 -2.91 -0.02 3.81 16 35 H 0.09 2.62 4.65 -2.38 -0.01 2.61 16 36 H 0.08 3.51 4.11 -2.39 -0.01 3.50 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 38 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.06 2.45 4.56 -2.39 -0.01 2.44 16 42 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.06 2.49 5.84 -2.39 -0.01 2.47 16 Total: -1.00 -65.55 330.37 0.81 -64.74 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.99 Total: 17.17 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 4.99 Total: -26.01 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -7.04 Total: -95.29 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.11 Total: -5.61 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.96 Total: 45.00 kcal Total: -65.55 0.81 -64.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232942441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.045 kcal (2) G-P(sol) polarization free energy of solvation -65.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds