Wall clock time and date at job start Fri Apr 10 2020 20:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00306 * 2 1 4 4 C 1.50703 * 120.00109 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.46786 * 95.00268 * 4 2 1 6 6 H 1.08998 * 109.47300 * 55.00394 * 5 4 2 7 7 O 1.42897 * 109.47372 * 295.00124 * 5 4 2 8 8 C 1.35663 * 117.00407 * 154.29897 * 7 5 4 9 9 C 1.39167 * 119.90186 * 5.58051 * 8 7 5 10 10 C 1.37590 * 120.09398 * 179.97438 * 9 8 7 11 11 C 1.39955 * 119.90402 * 0.27553 * 10 9 8 12 12 C 1.47566 * 120.08979 * 179.70399 * 11 10 9 13 13 O 1.21817 * 120.00621 * 359.97438 * 12 11 10 14 14 C 1.41761 * 119.99971 * 179.97438 * 12 11 10 15 15 H 1.08003 * 119.99960 * 359.97438 * 14 12 11 16 16 C 1.40339 * 120.00609 * 179.97438 * 14 12 11 17 17 N 1.30538 * 119.99936 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00324 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47039 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47167 * 120.00124 * 18 16 14 21 21 H 1.48497 * 109.47166 * 240.00157 * 18 16 14 22 22 C 1.39943 * 119.81292 * 359.44228 * 11 10 9 23 23 C 1.37597 * 119.90137 * 0.54004 * 22 11 10 24 24 C 1.50701 * 109.46995 * 175.00350 * 5 4 2 25 25 C 1.31001 * 120.00055 * 244.99870 * 24 5 4 26 26 C 1.50699 * 120.00281 * 64.99883 * 24 5 4 27 27 H 1.07999 * 119.99825 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99726 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.46835 * 269.99890 * 3 2 1 30 30 H 1.09001 * 109.47159 * 29.99193 * 3 2 1 31 31 H 1.09000 * 109.47325 * 149.99710 * 3 2 1 32 32 H 1.08999 * 109.46933 * 335.00915 * 4 2 1 33 33 H 1.09000 * 109.47598 * 215.00280 * 4 2 1 34 34 H 1.08004 * 119.95336 * 359.97132 * 9 8 7 35 35 H 1.08006 * 120.04723 * 180.02562 * 10 9 8 36 36 H 0.96992 * 120.00110 * 179.97438 * 17 16 14 37 37 H 1.07996 * 120.05111 * 180.24891 * 22 11 10 38 38 H 1.08010 * 119.95003 * 179.74313 * 23 22 11 39 39 H 1.08005 * 120.00139 * 0.02562 * 25 24 5 40 40 H 1.07994 * 120.00380 * 179.97438 * 25 24 5 41 41 H 1.09001 * 109.46923 * 89.99622 * 26 24 5 42 42 H 1.08997 * 109.47126 * 210.00384 * 26 24 5 43 43 H 1.09000 * 109.46962 * 330.00121 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4363 6 1 2.9771 -0.8655 -1.9002 7 8 1.2333 -1.9377 -2.1791 8 6 1.2942 -1.7599 -3.5227 9 6 2.5112 -1.4621 -4.1286 10 6 2.5776 -1.2815 -5.4909 11 6 1.4181 -1.3921 -6.2668 12 6 1.4835 -1.1928 -7.7275 13 8 2.5476 -0.9312 -8.2596 14 6 0.3079 -1.3058 -8.5116 15 1 -0.6355 -1.5382 -8.0400 16 6 0.3699 -1.1158 -9.9007 17 7 1.5102 -0.8354 -10.4709 18 14 -1.1791 -1.2654 -10.9340 19 1 -2.3314 -1.5881 -10.0547 20 1 -1.4346 0.0201 -11.6321 21 1 -1.0028 -2.3466 -11.9366 22 6 0.1975 -1.6976 -5.6542 23 6 0.1401 -1.8770 -4.2912 24 6 3.2853 -2.9234 -1.4268 25 6 4.5264 -2.8640 -1.8420 26 6 2.7156 -4.2308 -0.9397 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 2.2452 1.6197 -1.0278 30 1 1.4744 2.0648 0.5137 31 1 3.0159 1.1747 0.5139 32 1 1.4385 -2.0853 0.4351 33 1 2.9742 -1.1987 0.5900 34 1 3.4047 -1.3725 -3.5285 35 1 3.5225 -1.0508 -5.9604 36 1 1.5531 -0.7045 -11.4310 37 1 -0.6989 -1.7879 -6.2497 38 1 -0.8023 -2.1087 -3.8170 39 1 4.9349 -1.9270 -2.1908 40 1 5.1413 -3.7517 -1.8348 41 1 2.2693 -4.7671 -1.7771 42 1 3.5119 -4.8344 -0.5044 43 1 1.9534 -4.0362 -0.1852 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233522332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:48 Heat of formation + Delta-G solvation = -28.184756 kcal Electronic energy + Delta-G solvation = -23779.140836 eV Core-core repulsion = 20369.273942 eV Total energy + Delta-G solvation = -3409.866894 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.11213 -37.97972 -36.42333 -35.44814 -34.92417 -32.67419 -30.48714 -30.13069 -28.87114 -27.60004 -27.27160 -26.53400 -24.14750 -22.50654 -21.68197 -19.66345 -18.82996 -18.50046 -17.86351 -16.60940 -15.73933 -15.62941 -15.33614 -14.83036 -14.53462 -14.21506 -14.06037 -13.60018 -13.52955 -13.34907 -13.22876 -13.05667 -12.85432 -12.47255 -12.32324 -12.11839 -11.89932 -11.83338 -11.63341 -11.47517 -11.30885 -11.18688 -11.12293 -10.85468 -10.47172 -10.33185 -10.21788 -9.90629 -9.36048 -9.01419 -8.97135 -8.36917 -7.46378 -7.41178 -6.29369 -4.89263 1.90609 1.95519 2.05716 2.18970 3.04377 3.13552 3.18100 3.49751 4.01396 4.06250 4.41952 4.67481 4.69407 4.81405 4.89732 5.01360 5.21622 5.33405 5.37847 5.45427 5.48033 5.51977 5.53887 5.59874 5.71190 5.79577 5.83629 5.84273 5.87062 5.89760 5.95168 6.10279 6.17719 6.35134 6.39709 6.55900 6.63604 6.68957 6.79189 6.91378 7.08516 7.26227 7.40020 7.43340 7.90409 8.05510 8.80434 8.86105 10.32402 10.54744 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.003362 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.851372 B = 8325.213346 C = 8766.464357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.135 4.135 3 C -0.120 4.120 4 C -0.075 4.075 5 C 0.128 3.872 6 H 0.078 0.922 7 O -0.302 6.302 8 C 0.116 3.884 9 C -0.219 4.219 10 C -0.056 4.056 11 C -0.138 4.138 12 C 0.389 3.611 13 O -0.545 6.545 14 C -0.517 4.517 15 H 0.074 0.926 16 C 0.079 3.921 17 N -0.736 5.736 18 Si 0.906 3.094 19 H -0.260 1.260 20 H -0.273 1.273 21 H -0.273 1.273 22 C -0.058 4.058 23 C -0.166 4.166 24 C -0.149 4.149 25 C -0.179 4.179 26 C -0.112 4.112 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.273 0.727 37 H 0.135 0.865 38 H 0.120 0.880 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.089 -1.565 20.110 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.135 4.135 3 C -0.177 4.177 4 C -0.112 4.112 5 C 0.071 3.929 6 H 0.096 0.904 7 O -0.217 6.217 8 C 0.072 3.928 9 C -0.237 4.237 10 C -0.075 4.075 11 C -0.139 4.139 12 C 0.285 3.715 13 O -0.435 6.435 14 C -0.549 4.549 15 H 0.093 0.907 16 C -0.144 4.144 17 N -0.365 5.365 18 Si 0.730 3.270 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.198 1.198 22 C -0.076 4.076 23 C -0.184 4.184 24 C -0.149 4.149 25 C -0.215 4.215 26 C -0.168 4.168 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.084 0.916 37 H 0.153 0.847 38 H 0.138 0.862 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.568 -1.460 19.866 19.928 hybrid contribution -0.589 -0.069 -0.565 0.819 sum -0.022 -1.529 19.302 19.362 Atomic orbital electron populations 1.23686 0.95210 1.01840 1.00507 1.21574 0.95558 0.95089 1.01276 1.20872 0.99889 0.94635 1.02273 1.20744 1.00917 0.95297 0.94205 1.21294 0.85157 0.94380 0.92047 0.90427 1.86003 1.35158 1.84039 1.16464 1.19092 0.94207 0.97630 0.81879 1.21141 0.96481 1.10025 0.96102 1.21169 0.99054 0.95260 0.91991 1.21785 0.92306 1.00079 0.99757 1.18080 0.89959 0.79455 0.83967 1.90495 1.32054 1.47733 1.73187 1.20972 0.96677 1.44792 0.92422 0.90738 1.26014 0.96872 0.92792 0.98698 1.69974 1.25618 1.29692 1.11180 0.86333 0.82178 0.78604 0.79930 1.18332 1.19852 1.19849 1.21373 0.98473 0.95159 0.92578 1.20321 0.96161 1.08406 0.93535 1.22174 0.95654 0.96680 1.00417 1.23778 0.96111 1.02083 0.99576 1.20736 1.00812 0.94014 1.01271 0.88270 0.88674 0.91431 0.91864 0.92064 0.90150 0.89591 0.86362 0.85708 0.91593 0.84743 0.86179 0.88284 0.87848 0.91162 0.92048 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 13.75 29.02 0.40 -1.47 16 2 C -0.13 -1.41 5.10 -101.06 -0.52 -1.93 16 3 C -0.12 -1.10 10.03 36.01 0.36 -0.74 16 4 C -0.07 -0.74 4.89 -27.88 -0.14 -0.88 16 5 C 0.13 1.56 1.87 -27.88 -0.05 1.51 16 6 H 0.08 0.99 5.93 -51.93 -0.31 0.68 16 7 O -0.30 -4.56 9.28 -18.69 -0.17 -4.73 16 8 C 0.12 2.05 6.62 -38.90 -0.26 1.79 16 9 C -0.22 -3.99 8.70 -39.47 -0.34 -4.33 16 10 C -0.06 -1.23 9.59 -39.18 -0.38 -1.60 16 11 C -0.14 -3.31 5.89 -104.81 -0.62 -3.93 16 12 C 0.39 11.18 6.91 -34.43 -0.24 10.95 16 13 O -0.54 -17.54 14.89 5.08 0.08 -17.46 16 14 C -0.52 -14.32 8.86 -37.45 -0.33 -14.65 16 15 H 0.07 1.87 6.01 -52.48 -0.32 1.55 16 16 C 0.08 2.15 5.50 -17.31 -0.10 2.05 16 17 N -0.74 -21.32 11.73 55.57 0.65 -20.67 16 18 Si 0.91 19.32 29.56 -169.99 -5.03 14.30 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 C -0.06 -1.19 9.43 -39.18 -0.37 -1.56 16 23 C -0.17 -3.01 9.97 -39.48 -0.39 -3.40 16 24 C -0.15 -1.69 4.59 -101.07 -0.46 -2.16 16 25 C -0.18 -1.90 12.98 29.01 0.38 -1.53 16 26 C -0.11 -1.14 9.84 36.01 0.35 -0.78 16 27 H 0.10 1.05 7.99 -52.49 -0.42 0.64 16 28 H 0.09 0.93 8.04 -52.49 -0.42 0.51 16 29 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 30 H 0.06 0.52 8.06 -51.93 -0.42 0.10 16 31 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.08 0.77 7.04 -51.93 -0.37 0.41 16 33 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.12 1.86 4.30 -52.48 -0.23 1.63 16 35 H 0.12 2.78 7.65 -52.48 -0.40 2.38 16 36 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 37 H 0.13 2.66 6.19 -52.49 -0.33 2.33 16 38 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 39 H 0.10 1.01 7.23 -52.48 -0.38 0.63 16 40 H 0.10 0.98 8.04 -52.49 -0.42 0.55 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.52 8.06 -51.93 -0.42 0.10 16 43 H 0.06 0.60 7.02 -51.93 -0.36 0.24 16 LS Contribution 361.66 15.07 5.45 5.45 Total: -1.00 -32.66 361.66 -7.75 -40.41 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.03 Total: 5.37 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -2.70 Total: -22.66 kcal Atomic # 7 Polarization: -21.32 SS G_CDS: 0.65 Total: -20.67 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.10 Total: -22.20 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.66 -7.75 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.223 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds