Wall clock time and date at job start Fri Apr 10 2020 20:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00306 * 2 1 4 4 C 1.50703 * 120.00109 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.46786 * 95.00268 * 4 2 1 6 6 H 1.08998 * 109.47300 * 55.00394 * 5 4 2 7 7 O 1.42897 * 109.47372 * 295.00124 * 5 4 2 8 8 C 1.35663 * 117.00407 * 154.29897 * 7 5 4 9 9 C 1.39167 * 119.90186 * 5.58051 * 8 7 5 10 10 C 1.37590 * 120.09398 * 179.97438 * 9 8 7 11 11 C 1.39955 * 119.90402 * 0.27553 * 10 9 8 12 12 C 1.47566 * 120.08979 * 179.70399 * 11 10 9 13 13 O 1.21817 * 120.00621 * 359.97438 * 12 11 10 14 14 C 1.41761 * 119.99971 * 179.97438 * 12 11 10 15 15 H 1.08003 * 119.99960 * 359.97438 * 14 12 11 16 16 C 1.40339 * 120.00609 * 179.97438 * 14 12 11 17 17 N 1.30538 * 119.99936 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00324 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47039 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47167 * 120.00124 * 18 16 14 21 21 H 1.48497 * 109.47166 * 240.00157 * 18 16 14 22 22 C 1.39943 * 119.81292 * 359.44228 * 11 10 9 23 23 C 1.37597 * 119.90137 * 0.54004 * 22 11 10 24 24 C 1.50701 * 109.46995 * 175.00350 * 5 4 2 25 25 C 1.31001 * 120.00055 * 244.99870 * 24 5 4 26 26 C 1.50699 * 120.00281 * 64.99883 * 24 5 4 27 27 H 1.07999 * 119.99825 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99726 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.46835 * 269.99890 * 3 2 1 30 30 H 1.09001 * 109.47159 * 29.99193 * 3 2 1 31 31 H 1.09000 * 109.47325 * 149.99710 * 3 2 1 32 32 H 1.08999 * 109.46933 * 335.00915 * 4 2 1 33 33 H 1.09000 * 109.47598 * 215.00280 * 4 2 1 34 34 H 1.08004 * 119.95336 * 359.97132 * 9 8 7 35 35 H 1.08006 * 120.04723 * 180.02562 * 10 9 8 36 36 H 0.96992 * 120.00110 * 179.97438 * 17 16 14 37 37 H 1.07996 * 120.05111 * 180.24891 * 22 11 10 38 38 H 1.08010 * 119.95003 * 179.74313 * 23 22 11 39 39 H 1.08005 * 120.00139 * 0.02562 * 25 24 5 40 40 H 1.07994 * 120.00380 * 179.97438 * 25 24 5 41 41 H 1.09001 * 109.46923 * 89.99622 * 26 24 5 42 42 H 1.08997 * 109.47126 * 210.00384 * 26 24 5 43 43 H 1.09000 * 109.46962 * 330.00121 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4363 6 1 2.9771 -0.8655 -1.9002 7 8 1.2333 -1.9377 -2.1791 8 6 1.2942 -1.7599 -3.5227 9 6 2.5112 -1.4621 -4.1286 10 6 2.5776 -1.2815 -5.4909 11 6 1.4181 -1.3921 -6.2668 12 6 1.4835 -1.1928 -7.7275 13 8 2.5476 -0.9312 -8.2596 14 6 0.3079 -1.3058 -8.5116 15 1 -0.6355 -1.5382 -8.0400 16 6 0.3699 -1.1158 -9.9007 17 7 1.5102 -0.8354 -10.4709 18 14 -1.1791 -1.2654 -10.9340 19 1 -2.3314 -1.5881 -10.0547 20 1 -1.4346 0.0201 -11.6321 21 1 -1.0028 -2.3466 -11.9366 22 6 0.1975 -1.6976 -5.6542 23 6 0.1401 -1.8770 -4.2912 24 6 3.2853 -2.9234 -1.4268 25 6 4.5264 -2.8640 -1.8420 26 6 2.7156 -4.2308 -0.9397 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 2.2452 1.6197 -1.0278 30 1 1.4744 2.0648 0.5137 31 1 3.0159 1.1747 0.5139 32 1 1.4385 -2.0853 0.4351 33 1 2.9742 -1.1987 0.5900 34 1 3.4047 -1.3725 -3.5285 35 1 3.5225 -1.0508 -5.9604 36 1 1.5531 -0.7045 -11.4310 37 1 -0.6989 -1.7879 -6.2497 38 1 -0.8023 -2.1087 -3.8170 39 1 4.9349 -1.9270 -2.1908 40 1 5.1413 -3.7517 -1.8348 41 1 2.2693 -4.7671 -1.7771 42 1 3.5119 -4.8344 -0.5044 43 1 1.9534 -4.0362 -0.1852 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233522332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:47 Heat of formation + Delta-G solvation = -45.586186 kcal Electronic energy + Delta-G solvation = -23779.895419 eV Core-core repulsion = 20369.273942 eV Total energy + Delta-G solvation = -3410.621477 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.39487 -39.57172 -38.02015 -36.69692 -35.88857 -34.78335 -32.07967 -31.48176 -30.12478 -28.64388 -28.28238 -28.01144 -25.23653 -24.21381 -23.07943 -21.49589 -19.91993 -19.34842 -19.09397 -18.49861 -17.52223 -16.73438 -16.68049 -16.06743 -15.77262 -15.54004 -15.16534 -15.04498 -14.81913 -14.48838 -14.44637 -14.23440 -14.11326 -14.01561 -13.77432 -13.52203 -13.12883 -12.94278 -12.78238 -12.69507 -12.60829 -12.56493 -12.43835 -12.09712 -12.06446 -11.99556 -11.48496 -11.35151 -11.00385 -10.22657 -9.93541 -9.82339 -9.61588 -9.01594 -8.34501 -7.07365 0.24661 0.47958 1.08721 1.36467 1.37596 1.38565 1.57320 2.20876 2.21350 2.33086 2.86286 3.56969 3.75009 3.77171 3.88799 3.95988 4.04372 4.12196 4.19597 4.28639 4.37558 4.48069 4.52825 4.60545 4.70194 4.73758 4.79463 4.83953 4.88630 4.90891 5.01575 5.08557 5.11493 5.12519 5.13500 5.20674 5.33874 5.45542 5.56379 5.71572 5.75667 5.77262 5.87213 5.98881 6.01320 6.50831 6.70102 6.80441 8.25123 8.49271 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.003362 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.851372 B = 8325.213346 C = 8766.464357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.143 4.143 3 C -0.121 4.121 4 C -0.069 4.069 5 C 0.121 3.879 6 H 0.073 0.927 7 O -0.298 6.298 8 C 0.136 3.864 9 C -0.211 4.211 10 C -0.067 4.067 11 C -0.181 4.181 12 C 0.364 3.636 13 O -0.601 6.601 14 C -0.543 4.543 15 H 0.096 0.904 16 C 0.021 3.979 17 N -0.789 5.789 18 Si 0.996 3.004 19 H -0.242 1.242 20 H -0.265 1.265 21 H -0.265 1.265 22 C -0.054 4.054 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.177 4.177 26 C -0.111 4.111 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.144 0.856 35 H 0.105 0.895 36 H 0.282 0.718 37 H 0.141 0.859 38 H 0.153 0.847 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.644 -2.262 22.301 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.143 4.143 3 C -0.178 4.178 4 C -0.106 4.106 5 C 0.065 3.935 6 H 0.091 0.909 7 O -0.212 6.212 8 C 0.090 3.910 9 C -0.229 4.229 10 C -0.086 4.086 11 C -0.182 4.182 12 C 0.265 3.735 13 O -0.496 6.496 14 C -0.573 4.573 15 H 0.114 0.886 16 C -0.197 4.197 17 N -0.418 5.418 18 Si 0.815 3.185 19 H -0.165 1.165 20 H -0.189 1.189 21 H -0.189 1.189 22 C -0.072 4.072 23 C -0.179 4.179 24 C -0.162 4.162 25 C -0.213 4.213 26 C -0.167 4.167 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.161 0.839 35 H 0.124 0.876 36 H 0.092 0.908 37 H 0.159 0.841 38 H 0.170 0.830 39 H 0.119 0.881 40 H 0.134 0.866 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.173 -2.163 22.102 22.239 hybrid contribution 0.031 0.144 -1.043 1.053 sum -1.142 -2.019 21.060 21.187 Atomic orbital electron populations 1.23811 0.95506 1.02115 1.00742 1.21787 0.95724 0.95798 1.01028 1.20901 1.00706 0.94334 1.01845 1.20774 1.01981 0.95150 0.92714 1.21583 0.84265 0.94815 0.92809 0.90914 1.86035 1.36966 1.83309 1.14845 1.19170 0.93577 0.95071 0.83162 1.21260 0.98051 1.09033 0.94583 1.21086 0.97770 0.96253 0.93484 1.21438 0.94683 1.04425 0.97646 1.18814 0.89679 0.78492 0.86544 1.90432 1.33665 1.50536 1.74996 1.21490 0.97321 1.44984 0.93544 0.88570 1.27317 1.01050 0.91342 1.00008 1.70121 1.28932 1.30560 1.12150 0.84990 0.76876 0.78983 0.77690 1.16460 1.18931 1.18932 1.21374 0.97250 0.94732 0.93835 1.20566 0.97742 1.07190 0.92445 1.22219 0.95817 0.96769 1.01441 1.23985 0.96163 1.02759 0.98441 1.20751 1.01576 0.93452 1.00962 0.88388 0.88192 0.92579 0.91067 0.90626 0.89548 0.87520 0.83892 0.87648 0.90786 0.84142 0.82983 0.88107 0.86568 0.92619 0.90357 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.53 13.75 67.78 0.93 -2.60 16 2 C -0.14 -2.65 5.10 -16.48 -0.08 -2.73 16 3 C -0.12 -1.96 10.03 71.24 0.71 -1.25 16 4 C -0.07 -1.17 4.89 29.85 0.15 -1.02 16 5 C 0.12 2.64 1.87 29.85 0.06 2.69 16 6 H 0.07 1.68 5.93 -2.39 -0.01 1.67 16 7 O -0.30 -8.18 9.28 -89.79 -0.83 -9.01 16 8 C 0.14 4.52 6.62 22.71 0.15 4.67 16 9 C -0.21 -7.55 8.70 22.34 0.19 -7.35 16 10 C -0.07 -3.04 9.59 22.53 0.22 -2.82 16 11 C -0.18 -9.00 5.89 -19.99 -0.12 -9.12 16 12 C 0.36 22.08 6.91 25.60 0.18 22.26 16 13 O -0.60 -41.43 14.89 -4.72 -0.07 -41.50 16 14 C -0.54 -30.90 8.86 23.65 0.21 -30.69 16 15 H 0.10 4.84 6.01 -2.91 -0.02 4.82 16 16 C 0.02 1.18 5.50 85.40 0.47 1.65 16 17 N -0.79 -47.53 11.73 21.89 0.26 -47.27 16 18 Si 1.00 39.63 29.56 68.60 2.03 41.65 16 19 H -0.24 -8.83 7.11 99.48 0.71 -8.13 16 20 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 22 C -0.05 -2.21 9.43 22.53 0.21 -2.00 16 23 C -0.16 -5.52 9.97 22.34 0.22 -5.30 16 24 C -0.16 -3.26 4.59 -16.49 -0.08 -3.34 16 25 C -0.18 -3.35 12.98 67.78 0.88 -2.47 16 26 C -0.11 -1.97 9.84 71.24 0.70 -1.26 16 27 H 0.10 1.87 7.99 -2.91 -0.02 1.84 16 28 H 0.10 1.77 8.04 -2.91 -0.02 1.74 16 29 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.07 1.02 8.06 -2.39 -0.02 1.00 16 31 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 32 H 0.09 1.38 7.04 -2.39 -0.02 1.36 16 33 H 0.11 1.39 8.10 -2.39 -0.02 1.37 16 34 H 0.14 4.31 4.30 -2.91 -0.01 4.30 16 35 H 0.11 5.05 7.65 -2.91 -0.02 5.03 16 36 H 0.28 15.09 8.29 -92.71 -0.77 14.32 16 37 H 0.14 5.46 6.19 -2.91 -0.02 5.45 16 38 H 0.15 4.25 8.06 -2.91 -0.02 4.22 16 39 H 0.10 1.85 7.23 -2.91 -0.02 1.83 16 40 H 0.12 1.90 8.04 -2.91 -0.02 1.87 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.10 8.06 -2.39 -0.02 1.09 16 43 H 0.07 1.14 7.02 -2.39 -0.02 1.13 16 Total: -1.00 -74.91 361.66 7.39 -67.52 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 1.00 Total: 29.29 kcal Atomic # 6 Polarization: -45.68 SS G_CDS: 5.00 Total: -40.68 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.26 Total: -47.27 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -0.90 Total: -50.51 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.65 kcal Total: -74.91 7.39 -67.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.934 kcal (2) G-P(sol) polarization free energy of solvation -74.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds