Wall clock time and date at job start Fri Apr 10 2020 20:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00219 * 2 1 4 4 C 1.50707 * 119.99599 * 180.02562 * 2 1 3 5 5 C 1.53003 * 109.47266 * 95.00409 * 4 2 1 6 6 H 1.09002 * 109.46372 * 304.99743 * 5 4 2 7 7 O 1.42900 * 109.47286 * 64.99064 * 5 4 2 8 8 C 1.35659 * 117.00088 * 205.70984 * 7 5 4 9 9 C 1.39164 * 119.90339 * 174.16048 * 8 7 5 10 10 C 1.37601 * 120.09102 * 179.76619 * 9 8 7 11 11 C 1.39949 * 119.90344 * 0.50508 * 10 9 8 12 12 C 1.47572 * 120.09440 * 179.71905 * 11 10 9 13 13 O 1.21814 * 120.00018 * 180.02562 * 12 11 10 14 14 C 1.41765 * 119.99399 * 0.03204 * 12 11 10 15 15 H 1.07995 * 120.00464 * 359.97438 * 14 12 11 16 16 C 1.40351 * 119.99460 * 179.97438 * 14 12 11 17 17 N 1.30533 * 119.99874 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99926 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47119 * 89.99913 * 18 16 14 20 20 H 1.48497 * 109.47126 * 210.00295 * 18 16 14 21 21 H 1.48510 * 109.46952 * 330.00210 * 18 16 14 22 22 C 1.39956 * 119.81443 * 359.75373 * 11 10 9 23 23 C 1.37591 * 119.90128 * 359.97438 * 22 11 10 24 24 C 1.50691 * 109.47055 * 184.99686 * 5 4 2 25 25 C 1.31002 * 119.99862 * 114.99939 * 24 5 4 26 26 C 1.50699 * 120.00411 * 294.99421 * 24 5 4 27 27 H 1.07999 * 120.00044 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.00158 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47118 * 269.99805 * 3 2 1 30 30 H 1.09001 * 109.47032 * 30.00017 * 3 2 1 31 31 H 1.09004 * 109.46969 * 149.99694 * 3 2 1 32 32 H 1.08996 * 109.47136 * 334.99604 * 4 2 1 33 33 H 1.09007 * 109.46901 * 214.99637 * 4 2 1 34 34 H 1.07998 * 119.95698 * 0.02562 * 9 8 7 35 35 H 1.07992 * 120.04887 * 180.25904 * 10 9 8 36 36 H 0.97000 * 119.99474 * 179.97438 * 17 16 14 37 37 H 1.07991 * 120.04471 * 180.02562 * 22 11 10 38 38 H 1.08006 * 119.95089 * 179.97438 * 23 22 11 39 39 H 1.08004 * 120.00460 * 359.97438 * 25 24 5 40 40 H 1.08001 * 119.99959 * 179.72740 * 25 24 5 41 41 H 1.08999 * 109.47185 * 270.00318 * 26 24 5 42 42 H 1.08999 * 109.46602 * 29.99986 * 26 24 5 43 43 H 1.08996 * 109.47373 * 150.00226 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 -0.0006 5 6 2.4274 -1.6834 -1.4378 6 1 1.5244 -1.7025 -2.0481 7 8 3.3400 -0.7197 -1.9674 8 6 3.3589 -0.5649 -3.3150 9 6 4.1337 0.4395 -3.8872 10 6 4.1595 0.5968 -5.2540 11 6 3.3969 -0.2482 -6.0681 12 6 3.4166 -0.0793 -7.5339 13 8 2.7517 -0.8155 -8.2409 14 6 4.2094 0.9398 -8.1193 15 1 4.7986 1.5927 -7.4925 16 6 4.2286 1.1002 -9.5135 17 7 3.5160 0.3113 -10.2710 18 14 5.2727 2.4434 -10.2848 19 1 6.6278 1.9109 -10.5765 20 1 4.6380 2.9002 -11.5472 21 1 5.3823 3.5870 -9.3437 22 6 2.6148 -1.2536 -5.4881 23 6 2.5992 -1.4075 -4.1209 24 6 3.0716 -3.0456 -1.4509 25 6 2.4764 -4.0458 -2.0521 26 6 4.4005 -3.2573 -0.7726 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 2.2452 1.6197 -1.0276 30 1 1.4744 2.0647 0.5138 31 1 3.0159 1.1747 0.5139 32 1 1.4385 -2.0857 0.4334 33 1 2.9742 -1.1992 0.5889 34 1 4.7189 1.0937 -3.2580 35 1 4.7643 1.3738 -5.6975 36 1 3.5290 0.4225 -11.2345 37 1 2.0252 -1.9080 -6.1128 38 1 1.9956 -2.1829 -3.6724 39 1 1.5238 -3.8943 -2.5380 40 1 2.9401 -5.0211 -2.0653 41 1 5.2052 -3.0709 -1.4837 42 1 4.4925 -2.5703 0.0686 43 1 4.4649 -4.2839 -0.4120 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233522333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:51 Heat of formation + Delta-G solvation = -28.320779 kcal Electronic energy + Delta-G solvation = -23809.583119 eV Core-core repulsion = 20399.710326 eV Total energy + Delta-G solvation = -3409.872793 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.12950 -37.98718 -36.43109 -35.46464 -34.93598 -32.67769 -30.49738 -30.14566 -28.89603 -27.53685 -27.26215 -26.52959 -24.16334 -22.51987 -21.70273 -19.67030 -18.84176 -18.49656 -17.88943 -16.60928 -15.79972 -15.61344 -15.35445 -14.91520 -14.41246 -14.16654 -14.11674 -13.63583 -13.48210 -13.40217 -13.22579 -13.02868 -12.81923 -12.45842 -12.29295 -12.07822 -11.85826 -11.79227 -11.65011 -11.57724 -11.26297 -11.19541 -11.12191 -10.87240 -10.49453 -10.34664 -10.25302 -9.91879 -9.36658 -9.06161 -8.96575 -8.37807 -7.46856 -7.42200 -6.29562 -4.89659 1.89652 1.92931 2.04736 2.13501 3.05481 3.13095 3.16461 3.47848 4.01082 4.05545 4.40218 4.67269 4.69971 4.82138 4.87028 4.99580 5.21430 5.32860 5.39783 5.45603 5.48570 5.57312 5.58788 5.68519 5.70083 5.78464 5.81525 5.83283 5.88918 5.93164 5.99570 6.09155 6.16943 6.34190 6.39328 6.50354 6.62196 6.67879 6.74024 6.90487 7.07834 7.25732 7.38981 7.42365 7.89052 8.04555 8.79961 8.85689 10.32187 10.54454 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.020477 B = 0.003382 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.043480 B = 8276.840343 C = 8770.916203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.115 4.115 4 C -0.078 4.078 5 C 0.129 3.871 6 H 0.078 0.922 7 O -0.302 6.302 8 C 0.115 3.885 9 C -0.166 4.166 10 C -0.058 4.058 11 C -0.137 4.137 12 C 0.389 3.611 13 O -0.545 6.545 14 C -0.518 4.518 15 H 0.074 0.926 16 C 0.079 3.921 17 N -0.736 5.736 18 Si 0.906 3.094 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.261 1.261 22 C -0.056 4.056 23 C -0.218 4.218 24 C -0.149 4.149 25 C -0.178 4.178 26 C -0.112 4.112 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.135 0.865 36 H 0.274 0.726 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.092 -2.313 19.893 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.115 4.115 3 C -0.172 4.172 4 C -0.115 4.115 5 C 0.072 3.928 6 H 0.096 0.904 7 O -0.216 6.216 8 C 0.071 3.929 9 C -0.185 4.185 10 C -0.076 4.076 11 C -0.139 4.139 12 C 0.285 3.715 13 O -0.435 6.435 14 C -0.549 4.549 15 H 0.092 0.908 16 C -0.144 4.144 17 N -0.365 5.365 18 Si 0.730 3.270 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.185 1.185 22 C -0.075 4.075 23 C -0.237 4.237 24 C -0.150 4.150 25 C -0.215 4.215 26 C -0.168 4.168 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.138 0.862 35 H 0.153 0.847 36 H 0.085 0.915 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.379 -2.646 19.569 19.795 hybrid contribution 0.372 0.456 -0.449 0.740 sum -1.007 -2.190 19.120 19.272 Atomic orbital electron populations 1.23677 0.95201 1.01850 1.03263 1.21683 0.95194 0.95779 0.98890 1.20826 0.99683 0.93889 1.02779 1.20795 1.00710 0.95282 0.94704 1.21351 0.91589 0.85121 0.94722 0.90419 1.86010 1.59128 1.57349 1.19143 1.19094 0.96851 0.95437 0.81552 1.20321 1.03561 0.99536 0.95039 1.21375 0.96802 0.98016 0.91412 1.21794 0.96887 0.95420 0.99778 1.18075 0.83683 0.85778 0.83925 1.90495 1.43764 1.46456 1.62752 1.20939 1.25998 1.15861 0.92087 0.90782 1.26013 0.94637 0.96074 0.97649 1.69966 1.29551 1.31447 1.05492 0.86384 0.80301 0.81361 0.78983 1.19389 1.20171 1.18472 1.21170 0.96553 0.96625 0.93114 1.21143 1.05072 1.02727 0.94735 1.22171 0.97712 0.95156 0.99930 1.23785 1.00427 0.98461 0.98845 1.20735 0.94422 1.01436 1.00230 0.88391 0.88660 0.90786 0.92363 0.91894 0.89526 0.89975 0.86155 0.84741 0.91532 0.85706 0.86369 0.88289 0.87828 0.91149 0.91737 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.99 13.89 29.02 0.40 -1.59 16 2 C -0.12 -1.21 5.16 -101.06 -0.52 -1.73 16 3 C -0.12 -1.19 9.59 36.01 0.35 -0.84 16 4 C -0.08 -0.77 4.90 -27.88 -0.14 -0.91 16 5 C 0.13 1.56 1.87 -27.89 -0.05 1.51 16 6 H 0.08 1.00 5.93 -51.93 -0.31 0.69 16 7 O -0.30 -4.44 9.00 -18.68 -0.17 -4.61 16 8 C 0.12 2.00 6.62 -38.90 -0.26 1.74 16 9 C -0.17 -2.96 9.97 -39.47 -0.39 -3.35 16 10 C -0.06 -1.19 9.43 -39.17 -0.37 -1.56 16 11 C -0.14 -3.29 5.89 -104.81 -0.62 -3.90 16 12 C 0.39 11.16 6.91 -34.43 -0.24 10.92 16 13 O -0.54 -17.52 14.89 5.09 0.08 -17.44 16 14 C -0.52 -14.29 8.86 -37.44 -0.33 -14.62 16 15 H 0.07 1.84 6.01 -52.49 -0.32 1.53 16 16 C 0.08 2.15 5.50 -17.31 -0.10 2.05 16 17 N -0.74 -21.30 11.73 55.57 0.65 -20.65 16 18 Si 0.91 19.28 29.56 -169.99 -5.03 14.25 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 22 C -0.06 -1.22 9.59 -39.17 -0.38 -1.60 16 23 C -0.22 -3.96 8.70 -39.48 -0.34 -4.30 16 24 C -0.15 -1.69 4.59 -101.07 -0.46 -2.15 16 25 C -0.18 -1.90 12.98 29.01 0.38 -1.53 16 26 C -0.11 -1.13 9.84 36.00 0.35 -0.77 16 27 H 0.10 0.90 8.04 -52.49 -0.42 0.48 16 28 H 0.10 0.84 7.99 -52.49 -0.42 0.42 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.52 8.06 -51.93 -0.42 0.10 16 31 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.09 0.73 7.99 -51.93 -0.41 0.31 16 33 H 0.08 0.77 7.15 -51.92 -0.37 0.40 16 34 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.13 2.63 6.19 -52.49 -0.33 2.30 16 36 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 37 H 0.13 2.78 7.65 -52.49 -0.40 2.38 16 38 H 0.12 1.86 4.30 -52.48 -0.23 1.64 16 39 H 0.10 1.02 7.23 -52.48 -0.38 0.64 16 40 H 0.10 0.98 8.04 -52.49 -0.42 0.56 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.59 7.02 -51.93 -0.36 0.23 16 43 H 0.06 0.52 8.06 -51.93 -0.42 0.10 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -32.41 361.13 -7.77 -40.17 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.03 Total: 5.46 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -2.72 Total: -22.63 kcal Atomic # 7 Polarization: -21.30 SS G_CDS: 0.65 Total: -20.65 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.09 Total: -22.06 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.41 -7.77 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.854 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds