Wall clock time and date at job start Fri Apr 10 2020 20:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00219 * 2 1 4 4 C 1.50707 * 119.99599 * 180.02562 * 2 1 3 5 5 C 1.53003 * 109.47266 * 95.00409 * 4 2 1 6 6 H 1.09002 * 109.46372 * 304.99743 * 5 4 2 7 7 O 1.42900 * 109.47286 * 64.99064 * 5 4 2 8 8 C 1.35659 * 117.00088 * 205.70984 * 7 5 4 9 9 C 1.39164 * 119.90339 * 174.16048 * 8 7 5 10 10 C 1.37601 * 120.09102 * 179.76619 * 9 8 7 11 11 C 1.39949 * 119.90344 * 0.50508 * 10 9 8 12 12 C 1.47572 * 120.09440 * 179.71905 * 11 10 9 13 13 O 1.21814 * 120.00018 * 180.02562 * 12 11 10 14 14 C 1.41765 * 119.99399 * 0.03204 * 12 11 10 15 15 H 1.07995 * 120.00464 * 359.97438 * 14 12 11 16 16 C 1.40351 * 119.99460 * 179.97438 * 14 12 11 17 17 N 1.30533 * 119.99874 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99926 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47119 * 89.99913 * 18 16 14 20 20 H 1.48497 * 109.47126 * 210.00295 * 18 16 14 21 21 H 1.48510 * 109.46952 * 330.00210 * 18 16 14 22 22 C 1.39956 * 119.81443 * 359.75373 * 11 10 9 23 23 C 1.37591 * 119.90128 * 359.97438 * 22 11 10 24 24 C 1.50691 * 109.47055 * 184.99686 * 5 4 2 25 25 C 1.31002 * 119.99862 * 114.99939 * 24 5 4 26 26 C 1.50699 * 120.00411 * 294.99421 * 24 5 4 27 27 H 1.07999 * 120.00044 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.00158 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47118 * 269.99805 * 3 2 1 30 30 H 1.09001 * 109.47032 * 30.00017 * 3 2 1 31 31 H 1.09004 * 109.46969 * 149.99694 * 3 2 1 32 32 H 1.08996 * 109.47136 * 334.99604 * 4 2 1 33 33 H 1.09007 * 109.46901 * 214.99637 * 4 2 1 34 34 H 1.07998 * 119.95698 * 0.02562 * 9 8 7 35 35 H 1.07992 * 120.04887 * 180.25904 * 10 9 8 36 36 H 0.97000 * 119.99474 * 179.97438 * 17 16 14 37 37 H 1.07991 * 120.04471 * 180.02562 * 22 11 10 38 38 H 1.08006 * 119.95089 * 179.97438 * 23 22 11 39 39 H 1.08004 * 120.00460 * 359.97438 * 25 24 5 40 40 H 1.08001 * 119.99959 * 179.72740 * 25 24 5 41 41 H 1.08999 * 109.47185 * 270.00318 * 26 24 5 42 42 H 1.08999 * 109.46602 * 29.99986 * 26 24 5 43 43 H 1.08996 * 109.47373 * 150.00226 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 -0.0006 5 6 2.4274 -1.6834 -1.4378 6 1 1.5244 -1.7025 -2.0481 7 8 3.3400 -0.7197 -1.9674 8 6 3.3589 -0.5649 -3.3150 9 6 4.1337 0.4395 -3.8872 10 6 4.1595 0.5968 -5.2540 11 6 3.3969 -0.2482 -6.0681 12 6 3.4166 -0.0793 -7.5339 13 8 2.7517 -0.8155 -8.2409 14 6 4.2094 0.9398 -8.1193 15 1 4.7986 1.5927 -7.4925 16 6 4.2286 1.1002 -9.5135 17 7 3.5160 0.3113 -10.2710 18 14 5.2727 2.4434 -10.2848 19 1 6.6278 1.9109 -10.5765 20 1 4.6380 2.9002 -11.5472 21 1 5.3823 3.5870 -9.3437 22 6 2.6148 -1.2536 -5.4881 23 6 2.5992 -1.4075 -4.1209 24 6 3.0716 -3.0456 -1.4509 25 6 2.4764 -4.0458 -2.0521 26 6 4.4005 -3.2573 -0.7726 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 2.2452 1.6197 -1.0276 30 1 1.4744 2.0647 0.5138 31 1 3.0159 1.1747 0.5139 32 1 1.4385 -2.0857 0.4334 33 1 2.9742 -1.1992 0.5889 34 1 4.7189 1.0937 -3.2580 35 1 4.7643 1.3738 -5.6975 36 1 3.5290 0.4225 -11.2345 37 1 2.0252 -1.9080 -6.1128 38 1 1.9956 -2.1829 -3.6724 39 1 1.5238 -3.8943 -2.5380 40 1 2.9401 -5.0211 -2.0653 41 1 5.2052 -3.0709 -1.4837 42 1 4.4925 -2.5703 0.0686 43 1 4.4649 -4.2839 -0.4120 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233522333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:50 Heat of formation + Delta-G solvation = -45.520462 kcal Electronic energy + Delta-G solvation = -23810.328953 eV Core-core repulsion = 20399.710326 eV Total energy + Delta-G solvation = -3410.618627 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39784 -39.57061 -38.01874 -36.70436 -35.89886 -34.78266 -32.07720 -31.48866 -30.14195 -28.65044 -28.21397 -28.02351 -25.23079 -24.22126 -23.09220 -21.49394 -19.92913 -19.28829 -19.15672 -18.49094 -17.51683 -16.73286 -16.71616 -16.04238 -15.89998 -15.40943 -15.21072 -14.98885 -14.74785 -14.54192 -14.47046 -14.22280 -14.15558 -14.02556 -13.72807 -13.50702 -13.08298 -12.91627 -12.75905 -12.67575 -12.58927 -12.57557 -12.43921 -12.17966 -12.04927 -11.99371 -11.48213 -11.38925 -10.98811 -10.22698 -9.94020 -9.85629 -9.61639 -9.01060 -8.34257 -7.07303 0.24873 0.48191 1.07284 1.32871 1.38562 1.39262 1.55969 2.20896 2.21681 2.32245 2.86528 3.55909 3.75180 3.77211 3.88877 3.96093 4.07303 4.07571 4.18959 4.28962 4.37622 4.47479 4.53128 4.63010 4.70457 4.75990 4.81665 4.87446 4.90085 4.90763 5.01100 5.06426 5.11649 5.12755 5.19632 5.20601 5.33918 5.45849 5.56137 5.71285 5.74119 5.76011 5.85682 5.96721 5.99882 6.50642 6.70004 6.80692 8.25321 8.49375 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.020477 B = 0.003382 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.043480 B = 8276.840343 C = 8770.916203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 C -0.115 4.115 4 C -0.071 4.071 5 C 0.122 3.878 6 H 0.070 0.930 7 O -0.295 6.295 8 C 0.136 3.864 9 C -0.160 4.160 10 C -0.054 4.054 11 C -0.181 4.181 12 C 0.364 3.636 13 O -0.602 6.602 14 C -0.543 4.543 15 H 0.097 0.903 16 C 0.021 3.979 17 N -0.789 5.789 18 Si 0.997 3.003 19 H -0.258 1.258 20 H -0.269 1.269 21 H -0.244 1.244 22 C -0.068 4.068 23 C -0.212 4.212 24 C -0.162 4.162 25 C -0.178 4.178 26 C -0.111 4.111 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.154 0.846 35 H 0.141 0.859 36 H 0.282 0.718 37 H 0.104 0.896 38 H 0.142 0.858 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 -1.253 22.497 22.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.133 4.133 3 C -0.172 4.172 4 C -0.108 4.108 5 C 0.066 3.934 6 H 0.088 0.912 7 O -0.209 6.209 8 C 0.090 3.910 9 C -0.178 4.178 10 C -0.072 4.072 11 C -0.182 4.182 12 C 0.265 3.735 13 O -0.497 6.497 14 C -0.574 4.574 15 H 0.115 0.885 16 C -0.197 4.197 17 N -0.418 5.418 18 Si 0.815 3.185 19 H -0.182 1.182 20 H -0.194 1.194 21 H -0.167 1.167 22 C -0.087 4.087 23 C -0.230 4.230 24 C -0.162 4.162 25 C -0.215 4.215 26 C -0.167 4.167 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.172 0.828 35 H 0.159 0.841 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.160 0.840 39 H 0.118 0.882 40 H 0.134 0.866 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.169 -1.586 22.219 22.276 hybrid contribution -0.092 0.040 -1.065 1.070 sum -0.261 -1.546 21.153 21.211 Atomic orbital electron populations 1.23870 0.95227 1.02587 1.02108 1.21817 0.95551 0.96058 0.99836 1.20823 1.00295 0.94270 1.01785 1.20805 1.01370 0.95554 0.93068 1.21630 0.90721 0.85169 0.95835 0.91160 1.86046 1.59627 1.58048 1.17150 1.19170 0.94982 0.94092 0.82770 1.20575 1.03322 0.99787 0.94130 1.21385 0.96096 0.97363 0.92362 1.21442 1.00529 0.98514 0.97703 1.18818 0.83013 0.85436 0.86281 1.90432 1.46066 1.48420 1.64770 1.21468 1.26305 1.16189 0.93408 0.88517 1.27323 0.95679 0.98771 0.97951 1.70119 1.31482 1.33867 1.06314 0.85036 0.77969 0.77522 0.78018 1.18225 1.19370 1.16667 1.21078 0.96680 0.96331 0.94571 1.21258 1.05216 1.03386 0.93130 1.22229 0.98486 0.94664 1.00812 1.23983 1.00439 0.99080 0.97961 1.20752 0.93072 1.02843 1.00055 0.88075 0.87666 0.92609 0.91384 0.91299 0.87703 0.89135 0.82788 0.84086 0.90790 0.87765 0.84029 0.88241 0.86561 0.92551 0.90808 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.48 13.89 67.78 0.94 -2.54 16 2 C -0.13 -2.45 5.16 -16.48 -0.08 -2.53 16 3 C -0.12 -2.12 9.59 71.24 0.68 -1.44 16 4 C -0.07 -1.19 4.90 29.85 0.15 -1.04 16 5 C 0.12 2.65 1.87 29.85 0.06 2.71 16 6 H 0.07 1.65 5.93 -2.39 -0.01 1.64 16 7 O -0.30 -7.89 9.00 -89.75 -0.81 -8.70 16 8 C 0.14 4.45 6.62 22.71 0.15 4.60 16 9 C -0.16 -5.38 9.97 22.34 0.22 -5.15 16 10 C -0.05 -2.20 9.43 22.53 0.21 -1.98 16 11 C -0.18 -8.98 5.89 -19.98 -0.12 -9.10 16 12 C 0.36 22.05 6.91 25.61 0.18 22.23 16 13 O -0.60 -41.52 14.89 -4.71 -0.07 -41.59 16 14 C -0.54 -30.86 8.86 23.66 0.21 -30.65 16 15 H 0.10 4.83 6.01 -2.91 -0.02 4.81 16 16 C 0.02 1.18 5.50 85.40 0.47 1.65 16 17 N -0.79 -47.56 11.73 21.89 0.26 -47.31 16 18 Si 1.00 39.53 29.56 68.60 2.03 41.56 16 19 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 20 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 21 H -0.24 -8.92 7.11 99.48 0.71 -8.21 16 22 C -0.07 -3.08 9.59 22.53 0.22 -2.86 16 23 C -0.21 -7.57 8.70 22.34 0.19 -7.38 16 24 C -0.16 -3.24 4.59 -16.49 -0.08 -3.32 16 25 C -0.18 -3.40 12.98 67.78 0.88 -2.52 16 26 C -0.11 -1.93 9.84 71.24 0.70 -1.23 16 27 H 0.10 1.66 8.04 -2.91 -0.02 1.64 16 28 H 0.11 1.58 7.99 -2.91 -0.02 1.56 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.08 8.06 -2.39 -0.02 1.06 16 31 H 0.07 1.16 8.09 -2.38 -0.02 1.14 16 32 H 0.10 1.40 7.99 -2.39 -0.02 1.38 16 33 H 0.09 1.38 7.15 -2.38 -0.02 1.37 16 34 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 35 H 0.14 5.42 6.19 -2.91 -0.02 5.40 16 36 H 0.28 15.13 8.29 -92.71 -0.77 14.37 16 37 H 0.10 5.02 7.65 -2.92 -0.02 5.00 16 38 H 0.14 4.31 4.30 -2.91 -0.01 4.29 16 39 H 0.10 1.87 7.23 -2.91 -0.02 1.85 16 40 H 0.12 1.92 8.04 -2.91 -0.02 1.90 16 41 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 1.13 7.02 -2.39 -0.02 1.11 16 43 H 0.08 1.09 8.06 -2.39 -0.02 1.07 16 Total: -1.00 -74.69 361.13 7.39 -67.30 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 1.00 Total: 29.29 kcal Atomic # 6 Polarization: -45.54 SS G_CDS: 4.98 Total: -40.56 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.26 Total: -47.31 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -0.88 Total: -50.29 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -74.69 7.39 -67.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.782 kcal (2) G-P(sol) polarization free energy of solvation -74.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds