Wall clock time and date at job start Fri Apr 10 2020 20:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 115.51580 * 2 1 4 4 C 1.53002 * 117.46081 * 145.47428 * 2 1 3 5 5 H 1.09006 * 119.29278 * 355.36111 * 4 2 1 6 6 C 1.54260 * 118.20168 * 201.21733 * 4 2 1 7 7 C 1.54898 * 104.19349 * 270.99849 * 6 4 2 8 8 H 1.09002 * 110.75622 * 156.43852 * 7 6 4 9 9 O 1.42894 * 110.75878 * 279.62790 * 7 6 4 10 10 C 1.35638 * 117.00103 * 203.92046 * 9 7 6 11 11 C 1.38660 * 120.16057 * 354.52919 * 10 9 7 12 12 C 1.38094 * 120.09246 * 180.02562 * 11 10 9 13 13 C 1.38685 * 120.41671 * 359.94907 * 12 11 10 14 14 C 1.37702 * 120.32029 * 0.02562 * 13 12 11 15 15 C 1.39843 * 119.90320 * 0.02562 * 14 13 12 16 16 C 1.47530 * 120.20847 * 179.97438 * 15 14 13 17 17 O 1.21811 * 120.00320 * 179.97438 * 16 15 14 18 18 C 1.41829 * 119.99758 * 359.95753 * 16 15 14 19 19 H 1.08004 * 120.00214 * 7.46608 * 18 16 15 20 20 C 1.40324 * 120.00006 * 187.46663 * 18 16 15 21 21 N 1.30544 * 119.99896 * 7.00894 * 20 18 16 22 22 Si 1.86797 * 119.99974 * 187.00813 * 20 18 16 23 23 H 1.48498 * 109.47404 * 84.99139 * 22 20 18 24 24 H 1.48505 * 109.47128 * 204.99373 * 22 20 18 25 25 H 1.48503 * 109.47398 * 324.98836 * 22 20 18 26 26 C 1.54889 * 102.74497 * 37.94309 * 7 6 4 27 27 C 1.53876 * 60.87702 * 107.06542 * 4 2 1 28 28 H 1.08999 * 121.33803 * 252.10705 * 27 4 2 29 29 H 1.09003 * 109.47200 * 274.52409 * 1 2 3 30 30 H 1.08996 * 109.47216 * 34.52133 * 1 2 3 31 31 H 1.08997 * 109.47296 * 154.52399 * 1 2 3 32 32 H 1.09004 * 109.47211 * 205.47642 * 3 2 1 33 33 H 1.08997 * 109.47317 * 325.47738 * 3 2 1 34 34 H 1.09000 * 109.47400 * 85.47854 * 3 2 1 35 35 H 1.09002 * 110.48924 * 152.32703 * 6 4 2 36 36 H 1.09000 * 110.60221 * 29.72985 * 6 4 2 37 37 H 1.08003 * 119.95574 * 359.97319 * 11 10 9 38 38 H 1.07998 * 119.79055 * 179.97438 * 12 11 10 39 39 H 1.07997 * 119.84066 * 179.74188 * 13 12 11 40 40 H 1.07999 * 120.05032 * 179.97438 * 14 13 12 41 41 H 0.96999 * 119.99912 * 180.02562 * 21 20 18 42 42 H 1.08998 * 110.49070 * 80.73652 * 26 7 6 43 43 H 1.09006 * 110.48653 * 203.37671 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1890 1.3807 0.0000 4 6 2.2356 -1.1185 0.7695 5 1 1.6407 -1.8248 1.3487 6 6 3.6963 -0.8911 1.2102 7 6 4.5377 -1.3982 0.0126 8 1 5.5231 -0.9323 0.0081 9 8 4.6530 -2.8222 0.0415 10 6 5.7179 -3.3669 -0.5981 11 6 6.5728 -2.5630 -1.3367 12 6 7.6562 -3.1191 -1.9877 13 6 7.8992 -4.4822 -1.9084 14 6 7.0615 -5.2964 -1.1792 15 6 5.9598 -4.7475 -0.5155 16 6 5.0576 -5.6136 0.2671 17 8 4.0993 -5.1315 0.8442 18 6 5.3059 -7.0077 0.3473 19 1 6.2175 -7.4182 -0.0612 20 6 4.3671 -7.8536 0.9573 21 7 3.2075 -7.3822 1.3279 22 14 4.7767 -9.6542 1.2390 23 1 5.5235 -9.7984 2.5144 24 1 3.5201 -10.4426 1.3094 25 1 5.6118 -10.1534 0.1172 26 6 3.7037 -0.9397 -1.2094 27 6 2.2402 -1.1495 -0.7690 28 1 1.6419 -1.8726 -1.3232 29 1 -0.3634 0.0811 1.0245 30 1 -0.3633 0.8467 -0.5824 31 1 -0.3634 -0.9277 -0.4420 32 1 3.1828 1.3090 -0.4421 33 1 1.5815 2.0733 -0.5824 34 1 2.2724 1.7435 1.0244 35 1 3.9193 -1.4711 2.1058 36 1 3.8832 0.1682 1.3864 37 1 6.3907 -1.5005 -1.4036 38 1 8.3187 -2.4885 -2.5620 39 1 8.7469 -4.9079 -2.4247 40 1 7.2546 -6.3573 -1.1207 41 1 2.5587 -7.9669 1.7499 42 1 3.8900 0.1123 -1.4255 43 1 3.9321 -1.5551 -2.0797 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233523982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:54 Heat of formation + Delta-G solvation = -28.607325 kcal Electronic energy + Delta-G solvation = -24551.326597 eV Core-core repulsion = 21141.441378 eV Total energy + Delta-G solvation = -3409.885218 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.34020 -38.89722 -36.64876 -35.91959 -32.64798 -32.31279 -30.51666 -29.08016 -28.16181 -28.06446 -27.18974 -26.54161 -22.90351 -22.32761 -20.33346 -19.83116 -19.40769 -18.45946 -17.23270 -16.46086 -15.82992 -15.44392 -15.06173 -14.81439 -14.48022 -14.26750 -13.91739 -13.68397 -13.24300 -13.14858 -12.67940 -12.50597 -12.31874 -12.14759 -12.09389 -11.72195 -11.61101 -11.43478 -11.34903 -11.24275 -11.14157 -11.01289 -10.83719 -10.73629 -10.33501 -10.27412 -10.06585 -10.03877 -9.36148 -9.23537 -8.89715 -8.16059 -7.37369 -7.28372 -6.23052 -4.77351 1.85093 2.12018 3.10063 3.17053 3.19365 3.64603 3.83846 4.06855 4.12773 4.56256 4.69696 4.75256 4.83086 5.08306 5.19850 5.30547 5.35672 5.40611 5.51875 5.59664 5.63005 5.66081 5.72727 5.75479 5.83055 5.90413 5.91325 5.93344 5.95935 5.99189 6.08725 6.12448 6.23744 6.31692 6.35157 6.44508 6.50631 6.57217 6.75207 6.98312 6.99804 7.21351 7.34071 7.54346 8.12341 8.24465 8.89411 8.94901 10.42458 10.65692 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.014424 B = 0.004800 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.725214 B = 5832.427991 C = 7454.509664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.114 4.114 3 C -0.120 4.120 4 C -0.141 4.141 5 H 0.111 0.889 6 C -0.089 4.089 7 C 0.072 3.928 8 H 0.073 0.927 9 O -0.251 6.251 10 C 0.151 3.849 11 C -0.231 4.231 12 C -0.093 4.093 13 C -0.178 4.178 14 C -0.058 4.058 15 C -0.138 4.138 16 C 0.394 3.606 17 O -0.517 6.517 18 C -0.526 4.526 19 H 0.072 0.928 20 C 0.084 3.916 21 N -0.741 5.741 22 Si 0.903 3.097 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.118 4.118 27 C -0.148 4.148 28 H 0.109 0.891 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.134 0.866 41 H 0.273 0.727 42 H 0.079 0.921 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.315 13.221 -4.108 13.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.114 4.114 3 C -0.177 4.177 4 C -0.159 4.159 5 H 0.129 0.871 6 C -0.126 4.126 7 C 0.015 3.985 8 H 0.091 0.909 9 O -0.163 6.163 10 C 0.105 3.895 11 C -0.250 4.250 12 C -0.111 4.111 13 C -0.196 4.196 14 C -0.077 4.077 15 C -0.140 4.140 16 C 0.288 3.712 17 O -0.405 6.405 18 C -0.557 4.557 19 H 0.090 0.910 20 C -0.139 4.139 21 N -0.370 5.370 22 Si 0.727 3.273 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.155 4.155 27 C -0.166 4.166 28 H 0.127 0.873 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.151 0.849 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.504 13.378 -3.644 13.874 hybrid contribution 0.507 -0.891 -0.183 1.042 sum 1.011 12.486 -3.826 13.099 Atomic orbital electron populations 1.21289 0.92101 1.01868 1.01681 1.22061 0.94233 0.90870 1.04213 1.21391 1.00519 0.94243 1.01544 1.23265 0.96803 1.00861 0.94936 0.87065 1.22004 0.92359 1.00345 0.97896 1.23526 0.98168 0.81636 0.95212 0.90934 1.86530 1.41337 1.19295 1.69114 1.19451 0.86424 0.92513 0.91155 1.21090 0.99390 0.99321 1.05179 1.20802 0.96560 0.95066 0.98669 1.20934 1.01357 0.93808 1.03515 1.21398 0.92401 1.00119 0.93750 1.21551 0.98919 0.91522 1.02007 1.17971 0.84117 0.87930 0.81209 1.90541 1.29354 1.76448 1.44136 1.20874 1.05137 0.93721 1.36008 0.91031 1.25924 0.94098 1.00342 0.93506 1.69929 1.04361 1.36387 1.26307 0.86451 0.78755 0.82341 0.79728 1.19377 1.20347 1.18678 1.22503 0.93577 1.01072 0.98357 1.23703 0.96529 1.00801 0.95585 0.87282 0.92252 0.92392 0.92309 0.91976 0.92525 0.92299 0.89861 0.90104 0.86368 0.87020 0.86853 0.84853 0.91632 0.90293 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.85 37.16 0.37 -0.88 16 2 C -0.11 -1.43 2.74 -153.20 -0.42 -1.85 16 3 C -0.12 -1.23 8.45 37.15 0.31 -0.92 16 4 C -0.14 -2.18 6.54 -89.50 -0.58 -2.77 16 5 H 0.11 1.92 8.14 -51.93 -0.42 1.49 16 6 C -0.09 -1.34 6.03 -25.07 -0.15 -1.50 16 7 C 0.07 1.19 2.69 -24.73 -0.07 1.12 16 8 H 0.07 1.06 6.25 -51.93 -0.32 0.74 16 9 O -0.25 -5.64 7.98 -40.44 -0.32 -5.96 16 10 C 0.15 3.35 6.70 -38.61 -0.26 3.09 16 11 C -0.23 -4.12 8.91 -39.48 -0.35 -4.47 16 12 C -0.09 -1.51 10.04 -39.47 -0.40 -1.91 16 13 C -0.18 -3.06 10.02 -39.61 -0.40 -3.46 16 14 C -0.06 -1.21 9.43 -39.18 -0.37 -1.58 16 15 C -0.14 -3.38 5.90 -104.69 -0.62 -4.00 16 16 C 0.39 11.49 6.88 -34.42 -0.24 11.25 16 17 O -0.52 -16.75 13.82 -16.74 -0.23 -16.98 16 18 C -0.53 -14.76 8.83 -37.43 -0.33 -15.09 16 19 H 0.07 1.82 6.08 -52.48 -0.32 1.50 16 20 C 0.08 2.30 5.48 -17.31 -0.09 2.20 16 21 N -0.74 -21.71 11.83 55.57 0.66 -21.05 16 22 Si 0.90 19.66 29.57 -169.99 -5.03 14.63 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 26 C -0.12 -1.72 5.73 -25.07 -0.14 -1.86 16 27 C -0.15 -2.25 6.63 -88.19 -0.58 -2.84 16 28 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.55 7.93 -51.93 -0.41 0.14 16 31 H 0.06 0.69 7.96 -51.93 -0.41 0.27 16 32 H 0.06 0.62 5.31 -51.93 -0.28 0.35 16 33 H 0.06 0.51 7.93 -51.93 -0.41 0.10 16 34 H 0.06 0.56 8.03 -51.93 -0.42 0.15 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.08 0.98 6.80 -51.93 -0.35 0.62 16 37 H 0.12 1.77 5.90 -52.48 -0.31 1.46 16 38 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.13 2.65 6.23 -52.49 -0.33 2.32 16 41 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 42 H 0.08 0.93 6.01 -51.93 -0.31 0.62 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 344.87 15.07 5.20 5.20 Total: -1.00 -33.44 344.87 -10.02 -43.46 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.97 Total: 6.16 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -4.32 Total: -25.45 kcal Atomic # 7 Polarization: -21.71 SS G_CDS: 0.66 Total: -21.05 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.55 Total: -22.94 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.44 -10.02 -43.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.851 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds