Wall clock time and date at job start Fri Apr 10 2020 20:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 115.51580 * 2 1 4 4 C 1.53002 * 117.46081 * 145.47428 * 2 1 3 5 5 H 1.09006 * 119.29278 * 355.36111 * 4 2 1 6 6 C 1.54260 * 118.20168 * 201.21733 * 4 2 1 7 7 C 1.54898 * 104.19349 * 270.99849 * 6 4 2 8 8 H 1.09002 * 110.75622 * 156.43852 * 7 6 4 9 9 O 1.42894 * 110.75878 * 279.62790 * 7 6 4 10 10 C 1.35638 * 117.00103 * 203.92046 * 9 7 6 11 11 C 1.38660 * 120.16057 * 354.52919 * 10 9 7 12 12 C 1.38094 * 120.09246 * 180.02562 * 11 10 9 13 13 C 1.38685 * 120.41671 * 359.94907 * 12 11 10 14 14 C 1.37702 * 120.32029 * 0.02562 * 13 12 11 15 15 C 1.39843 * 119.90320 * 0.02562 * 14 13 12 16 16 C 1.47530 * 120.20847 * 179.97438 * 15 14 13 17 17 O 1.21811 * 120.00320 * 179.97438 * 16 15 14 18 18 C 1.41829 * 119.99758 * 359.95753 * 16 15 14 19 19 H 1.08004 * 120.00214 * 7.46608 * 18 16 15 20 20 C 1.40324 * 120.00006 * 187.46663 * 18 16 15 21 21 N 1.30544 * 119.99896 * 7.00894 * 20 18 16 22 22 Si 1.86797 * 119.99974 * 187.00813 * 20 18 16 23 23 H 1.48498 * 109.47404 * 84.99139 * 22 20 18 24 24 H 1.48505 * 109.47128 * 204.99373 * 22 20 18 25 25 H 1.48503 * 109.47398 * 324.98836 * 22 20 18 26 26 C 1.54889 * 102.74497 * 37.94309 * 7 6 4 27 27 C 1.53876 * 60.87702 * 107.06542 * 4 2 1 28 28 H 1.08999 * 121.33803 * 252.10705 * 27 4 2 29 29 H 1.09003 * 109.47200 * 274.52409 * 1 2 3 30 30 H 1.08996 * 109.47216 * 34.52133 * 1 2 3 31 31 H 1.08997 * 109.47296 * 154.52399 * 1 2 3 32 32 H 1.09004 * 109.47211 * 205.47642 * 3 2 1 33 33 H 1.08997 * 109.47317 * 325.47738 * 3 2 1 34 34 H 1.09000 * 109.47400 * 85.47854 * 3 2 1 35 35 H 1.09002 * 110.48924 * 152.32703 * 6 4 2 36 36 H 1.09000 * 110.60221 * 29.72985 * 6 4 2 37 37 H 1.08003 * 119.95574 * 359.97319 * 11 10 9 38 38 H 1.07998 * 119.79055 * 179.97438 * 12 11 10 39 39 H 1.07997 * 119.84066 * 179.74188 * 13 12 11 40 40 H 1.07999 * 120.05032 * 179.97438 * 14 13 12 41 41 H 0.96999 * 119.99912 * 180.02562 * 21 20 18 42 42 H 1.08998 * 110.49070 * 80.73652 * 26 7 6 43 43 H 1.09006 * 110.48653 * 203.37671 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1890 1.3807 0.0000 4 6 2.2356 -1.1185 0.7695 5 1 1.6407 -1.8248 1.3487 6 6 3.6963 -0.8911 1.2102 7 6 4.5377 -1.3982 0.0126 8 1 5.5231 -0.9323 0.0081 9 8 4.6530 -2.8222 0.0415 10 6 5.7179 -3.3669 -0.5981 11 6 6.5728 -2.5630 -1.3367 12 6 7.6562 -3.1191 -1.9877 13 6 7.8992 -4.4822 -1.9084 14 6 7.0615 -5.2964 -1.1792 15 6 5.9598 -4.7475 -0.5155 16 6 5.0576 -5.6136 0.2671 17 8 4.0993 -5.1315 0.8442 18 6 5.3059 -7.0077 0.3473 19 1 6.2175 -7.4182 -0.0612 20 6 4.3671 -7.8536 0.9573 21 7 3.2075 -7.3822 1.3279 22 14 4.7767 -9.6542 1.2390 23 1 5.5235 -9.7984 2.5144 24 1 3.5201 -10.4426 1.3094 25 1 5.6118 -10.1534 0.1172 26 6 3.7037 -0.9397 -1.2094 27 6 2.2402 -1.1495 -0.7690 28 1 1.6419 -1.8726 -1.3232 29 1 -0.3634 0.0811 1.0245 30 1 -0.3633 0.8467 -0.5824 31 1 -0.3634 -0.9277 -0.4420 32 1 3.1828 1.3090 -0.4421 33 1 1.5815 2.0733 -0.5824 34 1 2.2724 1.7435 1.0244 35 1 3.9193 -1.4711 2.1058 36 1 3.8832 0.1682 1.3864 37 1 6.3907 -1.5005 -1.4036 38 1 8.3187 -2.4885 -2.5620 39 1 8.7469 -4.9079 -2.4247 40 1 7.2546 -6.3573 -1.1207 41 1 2.5587 -7.9669 1.7499 42 1 3.8900 0.1123 -1.4255 43 1 3.9321 -1.5551 -2.0797 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233523982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:53 Heat of formation + Delta-G solvation = -46.990175 kcal Electronic energy + Delta-G solvation = -24552.123737 eV Core-core repulsion = 21141.441378 eV Total energy + Delta-G solvation = -3410.682359 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.65618 -40.32546 -38.39004 -37.70594 -34.73371 -33.54316 -32.15160 -30.55621 -29.32835 -29.15193 -28.68909 -28.06530 -24.55583 -23.81568 -21.67497 -21.54305 -20.77121 -19.66319 -18.70177 -18.34870 -17.35790 -17.06106 -16.46856 -16.17470 -16.03733 -15.59827 -15.07694 -15.00579 -14.93535 -14.73242 -14.19312 -14.05762 -13.54833 -13.50887 -13.26575 -13.07814 -13.01723 -12.85765 -12.75148 -12.69375 -12.58152 -12.42426 -12.21269 -12.08766 -12.08626 -11.86571 -11.60613 -11.35437 -10.97244 -10.49895 -10.37558 -9.71574 -9.44409 -8.93365 -8.31780 -6.99469 0.28140 0.63387 1.34933 1.37754 1.51904 2.20658 2.29499 2.40848 2.56504 2.92966 3.41862 3.53615 3.69999 3.80682 3.95794 4.01799 4.12802 4.16562 4.21646 4.24635 4.35582 4.41540 4.46838 4.58045 4.64176 4.67455 4.76632 4.79545 4.82969 4.88864 4.99350 5.04233 5.08369 5.15281 5.18000 5.21164 5.23331 5.23905 5.32217 5.45322 5.54794 5.57041 5.73120 5.97398 6.09969 6.72294 6.74625 6.93994 8.34128 8.55537 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.014424 B = 0.004800 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.725214 B = 5832.427991 C = 7454.509664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.075 4.075 3 C -0.121 4.121 4 C -0.170 4.170 5 H 0.073 0.927 6 C -0.083 4.083 7 C 0.059 3.941 8 H 0.098 0.902 9 O -0.297 6.297 10 C 0.132 3.868 11 C -0.225 4.225 12 C -0.071 4.071 13 C -0.171 4.171 14 C -0.064 4.064 15 C -0.199 4.199 16 C 0.370 3.630 17 O -0.574 6.574 18 C -0.556 4.556 19 H 0.091 0.909 20 C 0.025 3.975 21 N -0.796 5.796 22 Si 0.994 3.006 23 H -0.260 1.260 24 H -0.269 1.269 25 H -0.244 1.244 26 C -0.104 4.104 27 C -0.171 4.171 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.121 0.879 37 H 0.152 0.848 38 H 0.165 0.835 39 H 0.156 0.844 40 H 0.131 0.869 41 H 0.279 0.721 42 H 0.119 0.881 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.959 15.382 -6.046 16.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.075 4.075 3 C -0.177 4.177 4 C -0.189 4.189 5 H 0.092 0.908 6 C -0.120 4.120 7 C 0.003 3.997 8 H 0.116 0.884 9 O -0.210 6.210 10 C 0.086 3.914 11 C -0.244 4.244 12 C -0.088 4.088 13 C -0.189 4.189 14 C -0.082 4.082 15 C -0.201 4.201 16 C 0.267 3.733 17 O -0.466 6.466 18 C -0.587 4.587 19 H 0.109 0.891 20 C -0.192 4.192 21 N -0.426 5.426 22 Si 0.812 3.188 23 H -0.185 1.185 24 H -0.194 1.194 25 H -0.167 1.167 26 C -0.141 4.141 27 C -0.189 4.189 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.139 0.861 37 H 0.169 0.831 38 H 0.182 0.818 39 H 0.173 0.827 40 H 0.148 0.852 41 H 0.089 0.911 42 H 0.137 0.863 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.172 15.547 -5.604 16.827 hybrid contribution -0.311 -1.482 0.380 1.561 sum 2.861 14.065 -5.223 15.274 Atomic orbital electron populations 1.21384 0.91254 1.02270 1.02522 1.22224 0.94846 0.91194 0.99272 1.21479 1.01016 0.92261 1.02955 1.23246 0.97587 1.03068 0.94970 0.90816 1.22025 0.91736 1.01975 0.96218 1.23943 0.99885 0.79254 0.96582 0.88393 1.86484 1.42112 1.22646 1.69729 1.19706 0.87285 0.92341 0.92091 1.21444 0.98649 1.00512 1.03752 1.21442 0.95629 0.95188 0.96576 1.21355 1.01321 0.94110 1.02083 1.21463 0.92039 1.00637 0.94071 1.21246 1.00828 0.92784 1.05195 1.18736 0.84171 0.89454 0.80907 1.90477 1.31820 1.77653 1.46619 1.21398 1.06279 0.94208 1.36859 0.89103 1.27225 0.93338 1.06447 0.92215 1.70097 1.06018 1.39019 1.27446 0.85100 0.78991 0.74442 0.80260 1.18455 1.19372 1.16688 1.22445 0.92169 1.02891 0.96632 1.23761 0.97646 1.02674 0.94849 0.90100 0.91574 0.89649 0.93893 0.91146 0.90322 0.90996 0.93048 0.86067 0.83065 0.81762 0.82683 0.85162 0.91065 0.86290 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 9.85 71.98 0.71 -1.84 16 2 C -0.08 -1.83 2.74 -51.33 -0.14 -1.98 16 3 C -0.12 -2.02 8.45 71.98 0.61 -1.42 16 4 C -0.17 -5.67 6.54 -10.07 -0.07 -5.74 16 5 H 0.07 2.92 8.14 -2.38 -0.02 2.90 16 6 C -0.08 -2.58 6.03 31.67 0.19 -2.39 16 7 C 0.06 1.98 2.69 31.89 0.09 2.06 16 8 H 0.10 2.67 6.25 -2.39 -0.01 2.65 16 9 O -0.30 -14.25 7.98 -68.64 -0.55 -14.79 16 10 C 0.13 6.05 6.70 22.90 0.15 6.20 16 11 C -0.23 -7.49 8.91 22.34 0.20 -7.29 16 12 C -0.07 -1.97 10.04 22.34 0.22 -1.75 16 13 C -0.17 -5.31 10.02 22.25 0.22 -5.09 16 14 C -0.06 -2.65 9.43 22.53 0.21 -2.44 16 15 C -0.20 -10.26 5.90 -19.91 -0.12 -10.38 16 16 C 0.37 23.33 6.88 25.61 0.18 23.51 16 17 O -0.57 -40.84 13.82 16.17 0.22 -40.62 16 18 C -0.56 -33.08 8.83 23.67 0.21 -32.87 16 19 H 0.09 4.81 6.08 -2.91 -0.02 4.79 16 20 C 0.03 1.46 5.48 85.39 0.47 1.93 16 21 N -0.80 -49.97 11.83 21.88 0.26 -49.71 16 22 Si 0.99 41.55 29.57 68.60 2.03 43.58 16 23 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 24 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 25 H -0.24 -9.36 7.11 99.48 0.71 -8.66 16 26 C -0.10 -2.97 5.73 31.67 0.18 -2.79 16 27 C -0.17 -5.45 6.63 -9.22 -0.06 -5.51 16 28 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.41 7.93 -2.39 -0.02 1.39 16 31 H 0.04 1.05 7.96 -2.39 -0.02 1.04 16 32 H 0.07 1.09 5.31 -2.38 -0.01 1.08 16 33 H 0.08 1.04 7.93 -2.39 -0.02 1.02 16 34 H 0.07 1.09 8.03 -2.39 -0.02 1.07 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.12 2.70 6.80 -2.39 -0.02 2.69 16 37 H 0.15 3.93 5.90 -2.91 -0.02 3.91 16 38 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 39 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 40 H 0.13 5.26 6.23 -2.91 -0.02 5.25 16 41 H 0.28 15.72 8.29 -92.71 -0.77 14.95 16 42 H 0.12 2.38 6.01 -2.39 -0.01 2.36 16 43 H 0.06 1.87 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -84.37 344.87 6.24 -78.14 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 1.02 Total: 31.17 kcal Atomic # 6 Polarization: -51.02 SS G_CDS: 3.26 Total: -47.76 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.26 Total: -49.71 kcal Atomic # 8 Polarization: -55.09 SS G_CDS: -0.32 Total: -55.41 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -84.37 6.24 -78.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.146 kcal (2) G-P(sol) polarization free energy of solvation -84.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds