Wall clock time and date at job start Fri Apr 10 2020 20:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.09006 * 109.47428 * 324.91163 * 3 2 1 5 5 C 1.52994 * 109.47609 * 84.91828 * 3 2 1 6 6 C 1.53001 * 109.47610 * 185.00006 * 5 3 2 7 7 C 1.52994 * 109.47239 * 180.02562 * 6 5 3 8 8 C 1.53002 * 109.47246 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.47195 * 179.97438 * 8 7 6 10 10 O 1.42905 * 109.46980 * 204.91713 * 3 2 1 11 11 C 1.35635 * 116.99816 * 83.96700 * 10 3 2 12 12 C 1.38672 * 120.16457 * 354.41675 * 11 10 3 13 13 C 1.38087 * 120.09260 * 179.74478 * 12 11 10 14 14 C 1.38691 * 120.41730 * 0.55369 * 13 12 11 15 15 C 1.37704 * 120.32053 * 359.69869 * 14 13 12 16 16 C 1.39850 * 119.90171 * 0.02562 * 15 14 13 17 17 C 1.47534 * 120.20477 * 180.02562 * 16 15 14 18 18 O 1.21814 * 119.99503 * 179.97438 * 17 16 15 19 19 C 1.41830 * 120.00082 * 359.97360 * 17 16 15 20 20 H 1.07999 * 119.99754 * 7.53807 * 19 17 16 21 21 C 1.40322 * 119.99833 * 187.53844 * 19 17 16 22 22 N 1.30536 * 119.99926 * 353.41480 * 21 19 17 23 23 Si 1.86802 * 119.99766 * 173.41953 * 21 19 17 24 24 H 1.48504 * 109.47156 * 94.97671 * 23 21 19 25 25 H 1.48498 * 109.46943 * 214.97803 * 23 21 19 26 26 H 1.48497 * 109.47170 * 334.97644 * 23 21 19 27 27 H 4.18747 * 15.04031 * 359.97438 * 4 2 1 28 28 H 1.09000 * 109.46968 * 64.99316 * 5 3 2 29 29 H 1.09002 * 109.46659 * 305.00167 * 5 3 2 30 30 H 1.08994 * 109.47109 * 59.99777 * 6 5 3 31 31 H 1.09002 * 109.46530 * 300.00034 * 6 5 3 32 32 H 1.09006 * 109.47286 * 299.99998 * 7 6 5 33 33 H 1.09000 * 109.47197 * 59.99397 * 7 6 5 34 34 H 1.08998 * 109.47109 * 299.99745 * 8 7 6 35 35 H 1.09001 * 109.46560 * 60.00185 * 8 7 6 36 36 H 1.09001 * 109.47219 * 179.97438 * 9 8 7 37 37 H 1.08994 * 109.47884 * 300.00266 * 9 8 7 38 38 H 1.09010 * 109.47302 * 60.00327 * 9 8 7 39 39 H 1.07999 * 119.95095 * 0.02562 * 12 11 10 40 40 H 1.07998 * 119.79235 * 180.25628 * 13 12 11 41 41 H 1.07994 * 119.84349 * 179.72422 * 14 13 12 42 42 H 1.07999 * 120.04884 * 180.02562 * 15 14 13 43 43 H 0.97006 * 119.99823 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -0.8401 0.5908 5 6 3.1562 -0.1269 -1.4367 6 6 4.6811 -0.2516 -1.4274 7 6 5.1912 -0.3785 -2.8642 8 6 6.7161 -0.5025 -2.8549 9 6 7.2262 -0.6301 -4.2917 10 8 3.1218 1.2228 0.5676 11 6 3.2072 1.2814 1.9200 12 6 2.7342 0.2326 2.6942 13 6 2.8267 0.2915 4.0707 14 6 3.3813 1.4014 4.6904 15 6 3.8517 2.4548 3.9385 16 6 3.7699 2.4068 2.5432 17 6 4.2723 3.5314 1.7311 18 8 4.1996 3.4853 0.5160 19 6 4.8399 4.6660 2.3651 20 1 5.0163 4.6573 3.4305 21 6 5.1722 5.7998 1.6080 22 7 5.0800 5.7654 0.3064 23 14 5.7466 7.3582 2.4629 24 1 7.2309 7.3843 2.4998 25 1 5.2490 8.5431 1.7188 26 1 5.2164 7.3861 3.8498 27 1 -1.0500 -0.0004 0.0009 28 1 2.8673 0.7575 -2.0047 29 1 2.7219 -1.0133 -1.8991 30 1 4.9698 -1.1359 -0.8595 31 1 5.1152 0.6349 -0.9650 32 1 4.7570 -1.2647 -3.3270 33 1 4.9024 0.5062 -3.4318 34 1 7.1500 0.3840 -2.3924 35 1 7.0052 -1.3871 -2.2873 36 1 8.3126 -0.7180 -4.2851 37 1 6.7924 -1.5166 -4.7540 38 1 6.9371 0.2543 -4.8598 39 1 2.2969 -0.6334 2.2196 40 1 2.4605 -0.5299 4.6687 41 1 3.4450 1.4396 5.7677 42 1 4.2831 3.3168 4.4255 43 1 5.3101 6.5491 -0.2170 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233524081.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:56 Heat of formation + Delta-G solvation = -38.271621 kcal Electronic energy + Delta-G solvation = -23932.025012 eV Core-core repulsion = 20521.720719 eV Total energy + Delta-G solvation = -3410.304294 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26700 -39.07321 -37.92382 -37.02404 -34.88688 -34.61691 -33.03056 -32.17270 -30.71592 -29.31637 -28.59018 -25.69626 -24.53198 -23.29533 -22.23837 -21.91322 -21.46878 -19.70481 -18.93546 -18.40946 -17.39623 -16.76479 -16.61445 -16.51698 -16.09112 -15.52164 -15.12040 -14.96525 -14.87997 -14.70622 -14.42298 -14.15468 -13.88997 -13.44753 -13.42347 -13.25900 -12.89141 -12.75349 -12.67995 -12.52719 -12.28160 -12.19606 -12.07669 -11.97677 -11.93096 -11.79427 -11.71457 -11.41672 -11.38724 -11.05327 -10.95294 -9.74386 -9.44523 -9.02478 -8.27362 -6.98828 0.25392 0.59090 1.36732 1.38108 1.50734 1.54434 1.72674 2.22124 2.30128 2.67044 2.90469 3.23563 3.73864 3.78918 3.85010 3.96721 4.00616 4.04857 4.10480 4.28117 4.31864 4.34398 4.52782 4.54979 4.61475 4.64828 4.77341 4.82889 4.88082 4.93351 4.96144 5.03773 5.15349 5.16661 5.22253 5.24318 5.32157 5.41174 5.43830 5.50121 5.53691 5.69913 5.97199 6.06846 6.53299 6.61654 6.75910 6.90727 8.35182 8.57102 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.009202 B = 0.005361 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.228889 B = 5222.137202 C = 7187.658028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.257 4.257 3 C 0.180 3.820 4 H 0.104 0.896 5 C -0.097 4.097 6 C -0.115 4.115 7 C -0.111 4.111 8 C -0.128 4.128 9 C -0.148 4.148 10 O -0.291 6.291 11 C 0.129 3.871 12 C -0.223 4.223 13 C -0.072 4.072 14 C -0.166 4.166 15 C -0.064 4.064 16 C -0.191 4.191 17 C 0.367 3.633 18 O -0.570 6.570 19 C -0.552 4.552 20 H 0.091 0.909 21 C 0.024 3.976 22 N -0.792 5.792 23 Si 0.992 3.008 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.245 1.245 27 H 0.258 0.742 28 H 0.051 0.949 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.029 0.971 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.141 0.859 40 H 0.163 0.837 41 H 0.158 0.842 42 H 0.135 0.865 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.223 -14.190 1.450 14.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.258 4.258 3 C 0.124 3.876 4 H 0.121 0.879 5 C -0.134 4.134 6 C -0.153 4.153 7 C -0.148 4.148 8 C -0.166 4.166 9 C -0.205 4.205 10 O -0.204 6.204 11 C 0.083 3.917 12 C -0.241 4.241 13 C -0.090 4.090 14 C -0.183 4.183 15 C -0.082 4.082 16 C -0.193 4.193 17 C 0.265 3.735 18 O -0.462 6.462 19 C -0.583 4.583 20 H 0.109 0.891 21 C -0.194 4.194 22 N -0.422 5.422 23 Si 0.811 3.189 24 H -0.183 1.183 25 H -0.195 1.195 26 H -0.168 1.168 27 H 0.274 0.726 28 H 0.070 0.930 29 H 0.132 0.868 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.159 0.841 40 H 0.181 0.819 41 H 0.176 0.824 42 H 0.152 0.848 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.201 -14.040 0.535 14.410 hybrid contribution 0.037 1.013 0.113 1.020 sum -3.164 -13.026 0.647 13.420 Atomic orbital electron populations 1.25869 0.96650 0.96804 0.97949 1.23910 0.95513 1.03405 1.02928 1.19554 0.84038 0.87059 0.96949 0.87894 1.21599 0.96582 1.03159 0.92046 1.21511 0.94233 1.01262 0.98292 1.21543 0.95837 1.02134 0.95307 1.21542 0.95398 1.01396 0.98225 1.21746 1.01186 1.02031 0.95534 1.86581 1.79241 1.36621 1.17951 1.19678 0.94595 0.94534 0.82929 1.21369 1.07830 0.99126 0.95825 1.21413 0.96123 0.98448 0.93017 1.21375 1.02032 0.93776 1.01163 1.21500 0.96311 0.99220 0.91155 1.21275 1.05078 0.96884 0.96050 1.18725 0.80465 0.86140 0.88192 1.90486 1.57410 1.81473 1.16804 1.21392 1.39656 1.00253 0.97017 0.89074 1.27222 0.92882 1.04257 0.95004 1.70141 1.33056 1.30668 1.08312 0.85090 0.79200 0.75083 0.79548 1.18325 1.19481 1.16757 0.72585 0.93008 0.86788 0.90495 0.95201 0.89553 0.93463 0.94391 0.91012 0.92169 0.91274 0.93404 0.84133 0.81915 0.82411 0.84776 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.17 19.25 74.32 1.43 -2.74 16 2 C -0.26 -8.47 11.85 31.12 0.37 -8.10 16 3 C 0.18 6.38 2.12 28.79 0.06 6.44 16 4 H 0.10 3.13 6.38 -2.38 -0.02 3.12 16 5 C -0.10 -3.06 4.88 30.59 0.15 -2.91 16 6 C -0.12 -3.68 5.11 30.59 0.16 -3.52 16 7 C -0.11 -2.95 5.21 30.59 0.16 -2.80 16 8 C -0.13 -3.26 5.93 30.59 0.18 -3.08 16 9 C -0.15 -3.08 9.91 71.98 0.71 -2.36 16 10 O -0.29 -14.12 7.39 -68.61 -0.51 -14.63 16 11 C 0.13 5.97 6.60 22.90 0.15 6.12 16 12 C -0.22 -7.83 8.67 22.34 0.19 -7.63 16 13 C -0.07 -2.09 10.04 22.34 0.22 -1.87 16 14 C -0.17 -5.16 10.02 22.25 0.22 -4.94 16 15 C -0.06 -2.62 9.43 22.53 0.21 -2.41 16 16 C -0.19 -9.82 5.90 -19.91 -0.12 -9.94 16 17 C 0.37 22.90 6.90 25.61 0.18 23.08 16 18 O -0.57 -40.03 13.75 16.16 0.22 -39.81 16 19 C -0.55 -32.39 8.83 23.67 0.21 -32.18 16 20 H 0.09 4.75 6.08 -2.91 -0.02 4.74 16 21 C 0.02 1.37 5.49 85.39 0.47 1.84 16 22 N -0.79 -49.11 11.77 21.88 0.26 -48.85 16 23 Si 0.99 41.01 29.57 68.60 2.03 43.04 16 24 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.24 -9.35 7.11 99.48 0.71 -8.64 16 27 H 0.26 4.22 7.80 -4.42 -0.03 4.18 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.03 1.26 7.82 -2.39 -0.02 1.24 16 32 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.14 4.19 5.65 -2.91 -0.02 4.17 16 40 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 41 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 42 H 0.13 5.32 6.23 -2.91 -0.02 5.30 16 43 H 0.28 15.48 8.29 -92.70 -0.77 14.71 16 Total: -1.00 -83.33 365.73 7.95 -75.38 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.99 Total: 31.85 kcal Atomic # 6 Polarization: -51.95 SS G_CDS: 4.96 Total: -46.99 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.26 Total: -48.85 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -0.28 Total: -54.44 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -83.33 7.95 -75.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524081.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.109 kcal (2) G-P(sol) polarization free energy of solvation -83.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds