Wall clock time and date at job start Fri Apr 10 2020 20:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.08994 * 109.47051 * 353.27596 * 3 2 1 5 5 C 1.52995 * 109.47035 * 233.27043 * 3 2 1 6 6 C 1.53000 * 109.47138 * 175.00180 * 5 3 2 7 7 C 1.53001 * 109.47480 * 180.02562 * 6 5 3 8 8 C 1.52999 * 109.47146 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.46778 * 180.02562 * 8 7 6 10 10 O 1.42900 * 109.47012 * 113.27072 * 3 2 1 11 11 C 1.35633 * 117.00541 * 275.81798 * 10 3 2 12 12 C 1.38669 * 120.15606 * 5.38879 * 11 10 3 13 13 C 1.38090 * 120.09013 * 179.74684 * 12 11 10 14 14 C 1.38690 * 120.41808 * 0.55804 * 13 12 11 15 15 C 1.37699 * 120.31719 * 359.69502 * 14 13 12 16 16 C 1.39846 * 119.90242 * 0.02717 * 15 14 13 17 17 C 1.47534 * 120.20171 * 180.02562 * 16 15 14 18 18 O 1.21816 * 119.99612 * 179.97438 * 17 16 15 19 19 C 1.41832 * 120.00496 * 359.97438 * 17 16 15 20 20 H 1.08004 * 119.99477 * 0.02562 * 19 17 16 21 21 C 1.40320 * 119.99952 * 180.02562 * 19 17 16 22 22 N 1.30534 * 120.00156 * 359.97438 * 21 19 17 23 23 Si 1.86802 * 119.99505 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47485 * 359.97438 * 23 21 19 25 25 H 1.48508 * 109.47049 * 120.00027 * 23 21 19 26 26 H 1.48496 * 109.47233 * 239.99332 * 23 21 19 27 27 H 4.18736 * 15.03848 * 0.02562 * 4 2 1 28 28 H 1.09000 * 109.47526 * 295.00266 * 5 3 2 29 29 H 1.09001 * 109.46943 * 55.00222 * 5 3 2 30 30 H 1.09006 * 109.46921 * 299.99962 * 6 5 3 31 31 H 1.09002 * 109.47089 * 59.99630 * 6 5 3 32 32 H 1.08993 * 109.46706 * 300.00053 * 7 6 5 33 33 H 1.09001 * 109.47061 * 59.99760 * 7 6 5 34 34 H 1.09000 * 109.47289 * 300.00048 * 8 7 6 35 35 H 1.09001 * 109.47197 * 60.00014 * 8 7 6 36 36 H 1.09001 * 109.47248 * 60.00042 * 9 8 7 37 37 H 1.09004 * 109.46701 * 180.02562 * 9 8 7 38 38 H 1.09006 * 109.46904 * 299.99785 * 9 8 7 39 39 H 1.07998 * 119.95623 * 0.02698 * 12 11 10 40 40 H 1.08002 * 119.79405 * 180.29931 * 13 12 11 41 41 H 1.08001 * 119.84161 * 179.72448 * 14 13 12 42 42 H 1.08005 * 120.04654 * 180.02562 * 15 14 13 43 43 H 0.97008 * 119.99995 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -1.0197 0.1203 5 6 3.1556 0.8635 1.1561 6 6 4.6805 0.7646 1.2327 7 6 5.1901 1.6270 2.3892 8 6 6.7149 1.5275 2.4662 9 6 7.2244 2.3894 3.6231 10 8 3.1221 0.5331 -1.2377 11 6 3.2123 -0.3257 -2.2836 12 6 2.7471 -1.6261 -2.1592 13 6 2.8348 -2.4978 -3.2266 14 6 3.3976 -2.0857 -4.4253 15 6 3.8697 -0.7999 -4.5659 16 6 3.7823 0.0958 -3.4954 17 6 4.2856 1.4752 -3.6389 18 8 4.2071 2.2524 -2.7041 19 6 4.8606 1.8965 -4.8650 20 1 4.9297 1.2075 -5.6939 21 6 5.3397 3.2083 -5.0012 22 7 5.2556 4.0411 -3.9996 23 14 6.0964 3.7632 -6.6164 24 1 6.0729 2.6389 -7.5862 25 1 5.3177 4.9042 -7.1617 26 1 7.5004 4.1878 -6.3853 27 1 -1.0500 -0.0010 -0.0004 28 1 2.8668 1.9013 0.9897 29 1 2.7211 0.5110 2.0915 30 1 4.9693 -0.2732 1.3992 31 1 5.1149 1.1171 0.2972 32 1 4.9012 2.6647 2.2233 33 1 4.7556 1.2740 3.3245 34 1 7.0034 0.4896 2.6324 35 1 7.1497 1.8802 1.5310 36 1 6.7896 2.0363 4.5582 37 1 8.3108 2.3189 3.6777 38 1 6.9359 3.4274 3.4573 39 1 2.3114 -1.9562 -1.2278 40 1 2.4665 -3.5081 -3.1261 41 1 3.4656 -2.7766 -5.2527 42 1 4.3069 -0.4835 -5.5014 43 1 5.5865 4.9481 -4.0939 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233524082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:59 Heat of formation + Delta-G solvation = -38.118109 kcal Electronic energy + Delta-G solvation = -23941.727544 eV Core-core repulsion = 20531.429907 eV Total energy + Delta-G solvation = -3410.297637 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26775 -39.07300 -37.92279 -37.02472 -34.88609 -34.61294 -33.03004 -32.17417 -30.71613 -29.31707 -28.58987 -25.69723 -24.53341 -23.29620 -22.23874 -21.91480 -21.46956 -19.70501 -18.93782 -18.40703 -17.40176 -16.76372 -16.61536 -16.51732 -16.08477 -15.52214 -15.12330 -14.96114 -14.87865 -14.69945 -14.44408 -14.13993 -13.89348 -13.43264 -13.42762 -13.24629 -12.89140 -12.76025 -12.70163 -12.52740 -12.29065 -12.18208 -12.07181 -11.95961 -11.92031 -11.79421 -11.71566 -11.41761 -11.38714 -11.05282 -10.97462 -9.74403 -9.44519 -9.02432 -8.26148 -6.99571 0.25459 0.59077 1.36917 1.36976 1.50826 1.55340 1.72827 2.22122 2.30104 2.67106 2.90743 3.23663 3.73868 3.80434 3.85026 3.96445 4.00375 4.04830 4.10458 4.27959 4.31750 4.34254 4.52719 4.54885 4.61457 4.64746 4.77225 4.82763 4.87930 4.93241 4.96099 5.03648 5.15169 5.16535 5.22111 5.24356 5.32000 5.41140 5.43683 5.49994 5.53640 5.69873 5.97082 6.06932 6.53412 6.61713 6.75991 6.90851 8.35621 8.57651 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.009074 B = 0.005453 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.086929 B = 5133.179332 C = 7173.446389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.257 4.257 3 C 0.180 3.820 4 H 0.104 0.896 5 C -0.097 4.097 6 C -0.115 4.115 7 C -0.111 4.111 8 C -0.128 4.128 9 C -0.148 4.148 10 O -0.291 6.291 11 C 0.129 3.871 12 C -0.223 4.223 13 C -0.072 4.072 14 C -0.166 4.166 15 C -0.064 4.064 16 C -0.191 4.191 17 C 0.366 3.634 18 O -0.570 6.570 19 C -0.551 4.551 20 H 0.091 0.909 21 C 0.024 3.976 22 N -0.792 5.792 23 Si 0.993 3.007 24 H -0.243 1.243 25 H -0.266 1.266 26 H -0.265 1.265 27 H 0.258 0.742 28 H 0.051 0.949 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.029 0.971 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.037 0.963 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.141 0.859 40 H 0.163 0.837 41 H 0.158 0.842 42 H 0.134 0.866 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.154 -11.549 8.402 14.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.258 4.258 3 C 0.124 3.876 4 H 0.121 0.879 5 C -0.134 4.134 6 C -0.153 4.153 7 C -0.148 4.148 8 C -0.166 4.166 9 C -0.205 4.205 10 O -0.204 6.204 11 C 0.083 3.917 12 C -0.242 4.242 13 C -0.090 4.090 14 C -0.183 4.183 15 C -0.082 4.082 16 C -0.193 4.193 17 C 0.264 3.736 18 O -0.461 6.461 19 C -0.582 4.582 20 H 0.109 0.891 21 C -0.194 4.194 22 N -0.421 5.421 23 Si 0.811 3.189 24 H -0.165 1.165 25 H -0.191 1.191 26 H -0.190 1.190 27 H 0.274 0.726 28 H 0.070 0.930 29 H 0.132 0.868 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.159 0.841 40 H 0.181 0.819 41 H 0.176 0.824 42 H 0.152 0.848 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.127 -10.832 8.985 14.416 hybrid contribution 0.094 0.674 -0.743 1.007 sum -3.033 -10.158 8.241 13.428 Atomic orbital electron populations 1.25867 0.96648 0.98352 0.96387 1.23906 0.95506 1.02683 1.03663 1.19552 0.84046 0.99742 0.84265 0.87901 1.21599 0.96561 0.99457 0.95763 1.21513 0.94257 1.00963 0.98568 1.21542 0.95830 0.99251 0.98188 1.21543 0.95413 1.00977 0.98632 1.21748 1.01184 0.99424 0.98131 1.86578 1.79254 1.36513 1.18047 1.19673 0.94568 0.89733 0.87755 1.21369 1.07960 0.92565 1.02265 1.21414 0.96108 0.99952 0.91530 1.21375 1.01948 0.95637 0.99386 1.21499 0.96368 0.93116 0.97222 1.21274 1.04884 0.99637 0.93486 1.18731 0.80340 0.85300 0.89233 1.90488 1.56918 1.55755 1.42976 1.21436 1.37880 0.98285 1.00581 0.89071 1.27221 0.94211 0.96186 1.01810 1.70146 1.32978 1.05529 1.33468 0.85050 0.78046 0.79247 0.76528 1.16540 1.19096 1.19012 0.72576 0.92996 0.86782 0.90519 0.95227 0.93456 0.89541 0.91015 0.94428 0.91257 0.92174 0.93402 0.84125 0.81915 0.82414 0.84791 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.16 19.25 74.32 1.43 -2.73 16 2 C -0.26 -8.46 11.88 31.13 0.37 -8.09 16 3 C 0.18 6.38 2.12 28.79 0.06 6.44 16 4 H 0.10 3.13 6.36 -2.39 -0.02 3.12 16 5 C -0.10 -3.06 4.88 30.59 0.15 -2.91 16 6 C -0.12 -3.69 5.11 30.59 0.16 -3.54 16 7 C -0.11 -2.96 5.21 30.59 0.16 -2.80 16 8 C -0.13 -3.28 5.93 30.59 0.18 -3.10 16 9 C -0.15 -3.09 9.91 71.98 0.71 -2.37 16 10 O -0.29 -14.13 7.39 -68.59 -0.51 -14.63 16 11 C 0.13 5.98 6.60 22.90 0.15 6.13 16 12 C -0.22 -7.83 8.67 22.34 0.19 -7.64 16 13 C -0.07 -2.10 10.04 22.34 0.22 -1.87 16 14 C -0.17 -5.16 10.02 22.25 0.22 -4.94 16 15 C -0.06 -2.63 9.43 22.53 0.21 -2.42 16 16 C -0.19 -9.82 5.90 -19.91 -0.12 -9.93 16 17 C 0.37 22.85 6.91 25.61 0.18 23.03 16 18 O -0.57 -40.00 13.72 16.16 0.22 -39.78 16 19 C -0.55 -32.30 8.86 23.67 0.21 -32.09 16 20 H 0.09 4.76 6.02 -2.91 -0.02 4.74 16 21 C 0.02 1.34 5.50 85.39 0.47 1.80 16 22 N -0.79 -49.04 11.73 21.88 0.26 -48.78 16 23 Si 0.99 41.03 29.56 68.60 2.03 43.06 16 24 H -0.24 -9.21 7.11 99.48 0.71 -8.50 16 25 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 26 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 27 H 0.26 4.20 7.80 -4.42 -0.03 4.17 16 28 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 31 H 0.03 1.26 7.82 -2.39 -0.02 1.24 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.14 4.19 5.66 -2.91 -0.02 4.17 16 40 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 41 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 42 H 0.13 5.32 6.20 -2.91 -0.02 5.30 16 43 H 0.28 15.43 8.29 -92.70 -0.77 14.66 16 Total: -1.00 -83.33 365.65 7.96 -75.38 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 0.99 Total: 31.79 kcal Atomic # 6 Polarization: -51.99 SS G_CDS: 4.97 Total: -47.03 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.26 Total: -48.78 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -0.29 Total: -54.41 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -83.33 7.96 -75.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.258 kcal (2) G-P(sol) polarization free energy of solvation -83.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds