Wall clock time and date at job start Fri Apr 10 2020 20:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47190 * 317.91906 * 3 2 1 5 5 C 1.52996 * 109.47181 * 77.91827 * 3 2 1 6 6 C 1.52995 * 109.47375 * 184.99654 * 5 3 2 7 7 C 1.52996 * 109.47375 * 180.02562 * 6 5 3 8 8 C 1.53005 * 109.47372 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47372 * 179.97438 * 8 7 6 10 10 O 1.42900 * 109.46693 * 197.91389 * 3 2 1 11 11 C 1.35664 * 116.99514 * 84.30892 * 10 3 2 12 12 C 1.39165 * 119.90233 * 174.33529 * 11 10 3 13 13 C 1.37591 * 120.09302 * 179.75765 * 12 11 10 14 14 C 1.39949 * 119.90288 * 0.51677 * 13 12 11 15 15 C 1.47582 * 120.09341 * 179.71579 * 14 13 12 16 16 O 1.21819 * 119.99750 * 180.02562 * 15 14 13 17 17 C 1.41764 * 119.99737 * 0.02562 * 15 14 13 18 18 H 1.07993 * 119.99913 * 359.97438 * 17 15 14 19 19 C 1.40337 * 119.99430 * 179.97438 * 17 15 14 20 20 N 1.30532 * 120.00448 * 0.02562 * 19 17 15 21 21 Si 1.86808 * 119.99793 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46781 * 59.99787 * 21 19 17 23 23 H 1.48494 * 109.47191 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46898 * 300.00270 * 21 19 17 25 25 C 1.39947 * 119.81875 * 359.73972 * 14 13 12 26 26 C 1.37602 * 119.89836 * 359.97438 * 25 14 13 27 27 H 4.18739 * 15.03981 * 359.97438 * 4 2 1 28 28 H 1.09003 * 109.47302 * 304.99891 * 5 3 2 29 29 H 1.09004 * 109.47556 * 64.99457 * 5 3 2 30 30 H 1.09003 * 109.47099 * 300.00361 * 6 5 3 31 31 H 1.09004 * 109.46902 * 59.99981 * 6 5 3 32 32 H 1.09003 * 109.47302 * 300.00237 * 7 6 5 33 33 H 1.09004 * 109.47121 * 60.00115 * 7 6 5 34 34 H 1.09003 * 109.47062 * 300.00337 * 8 7 6 35 35 H 1.09004 * 109.46942 * 59.99959 * 8 7 6 36 36 H 1.08995 * 109.47477 * 180.02562 * 9 8 7 37 37 H 1.09007 * 109.46911 * 299.99918 * 9 8 7 38 38 H 1.08995 * 109.46981 * 59.99877 * 9 8 7 39 39 H 1.08001 * 119.95368 * 0.02562 * 12 11 10 40 40 H 1.08007 * 120.05150 * 180.25520 * 13 12 11 41 41 H 0.97000 * 119.99887 * 180.02562 * 20 19 17 42 42 H 1.07991 * 120.05590 * 180.02562 * 25 14 13 43 43 H 1.07996 * 119.94873 * 179.97438 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0097 -0.7619 0.6887 5 6 3.1562 -0.3010 -1.4105 6 6 4.6810 -0.4236 -1.3860 7 6 5.1912 -0.7246 -2.7967 8 6 6.7161 -0.8478 -2.7721 9 6 7.2262 -1.1495 -4.1826 10 8 3.1217 1.2829 0.4144 11 6 3.2138 1.5034 1.7498 12 6 3.7796 2.6845 2.2206 13 6 3.8704 2.9144 3.5741 14 6 3.4027 1.9536 4.4779 15 6 3.5038 2.1932 5.9306 16 8 3.0966 1.3555 6.7158 17 6 4.0748 3.3980 6.4123 18 1 4.4362 4.1403 5.7162 19 6 4.1704 3.6259 7.7937 20 7 3.7341 2.7284 8.6351 21 14 4.9222 5.2139 8.4285 22 1 4.1347 6.3691 7.9279 23 1 4.9068 5.2099 9.9134 24 1 6.3232 5.3247 7.9487 25 6 2.8393 0.7649 4.0003 26 6 2.7470 0.5457 2.6451 27 1 -1.0500 -0.0003 0.0009 28 1 2.7220 -1.2372 -1.7614 29 1 2.8674 0.5075 -2.0821 30 1 5.1152 0.5126 -1.0351 31 1 4.9698 -1.2322 -0.7145 32 1 4.7571 -1.6607 -3.1480 33 1 4.9025 0.0843 -3.4678 34 1 7.1506 0.0880 -2.4206 35 1 7.0045 -1.6570 -2.1010 36 1 8.3125 -1.2377 -4.1650 37 1 6.7917 -2.0856 -4.5336 38 1 6.9378 -0.3408 -4.8540 39 1 4.1439 3.4236 1.5224 40 1 4.3059 3.8331 3.9387 41 1 3.7999 2.8862 9.5899 42 1 2.4769 0.0212 4.6943 43 1 2.3128 -0.3715 2.2756 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233526376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:02 Heat of formation + Delta-G solvation = -26.444632 kcal Electronic energy + Delta-G solvation = -22810.165981 eV Core-core repulsion = 19400.374544 eV Total energy + Delta-G solvation = -3409.791437 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.00611 -37.86191 -36.49813 -35.66701 -33.87639 -32.68507 -32.22480 -30.51615 -29.65436 -28.35725 -26.59227 -24.90854 -22.65851 -22.29976 -21.35911 -21.02502 -19.67660 -18.71145 -17.90372 -16.65776 -15.97067 -15.64800 -15.54936 -15.37441 -14.42525 -14.35453 -14.06522 -13.76138 -13.65691 -13.31855 -13.04035 -12.84522 -12.60074 -12.50176 -12.15582 -12.05608 -11.73356 -11.69159 -11.26089 -11.20281 -11.16096 -11.12075 -11.00774 -10.80094 -10.70364 -10.51782 -10.46456 -10.36158 -10.19210 -9.90660 -8.97093 -8.41617 -7.49175 -7.48422 -6.30558 -4.90911 1.84657 2.01064 2.45565 2.67241 3.06988 3.12344 3.14339 3.61195 3.98202 4.00397 4.11698 4.54365 4.65099 4.66775 4.73189 4.87553 5.00682 5.03708 5.22848 5.33620 5.40269 5.42766 5.49041 5.53805 5.65035 5.67627 5.78348 5.80480 5.81740 5.85079 5.92244 5.98716 6.05304 6.11561 6.14129 6.19181 6.33150 6.64375 6.85685 7.04702 7.24270 7.33175 7.38410 7.45372 7.81923 8.02893 8.78755 8.84095 10.31092 10.53121 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.017704 B = 0.002812 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.218800 B = 9955.472750 C =10918.734427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.216 4.216 3 C 0.197 3.803 4 H 0.094 0.906 5 C -0.106 4.106 6 C -0.123 4.123 7 C -0.118 4.118 8 C -0.127 4.127 9 C -0.153 4.153 10 O -0.301 6.301 11 C 0.108 3.892 12 C -0.162 4.162 13 C -0.058 4.058 14 C -0.134 4.134 15 C 0.389 3.611 16 O -0.544 6.544 17 C -0.517 4.517 18 H 0.074 0.926 19 C 0.079 3.921 20 N -0.736 5.736 21 Si 0.906 3.094 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.264 1.264 25 C -0.056 4.056 26 C -0.215 4.215 27 H 0.220 0.780 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.122 0.878 40 H 0.137 0.863 41 H 0.274 0.726 42 H 0.127 0.873 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.472 -5.058 -21.028 21.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.216 4.216 3 C 0.141 3.859 4 H 0.112 0.888 5 C -0.143 4.143 6 C -0.160 4.160 7 C -0.156 4.156 8 C -0.165 4.165 9 C -0.210 4.210 10 O -0.216 6.216 11 C 0.064 3.936 12 C -0.180 4.180 13 C -0.076 4.076 14 C -0.136 4.136 15 C 0.285 3.715 16 O -0.434 6.434 17 C -0.548 4.548 18 H 0.092 0.908 19 C -0.144 4.144 20 N -0.364 5.364 21 Si 0.730 3.270 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.189 1.189 25 C -0.075 4.075 26 C -0.234 4.234 27 H 0.236 0.764 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.140 0.860 40 H 0.154 0.846 41 H 0.086 0.914 42 H 0.145 0.855 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.293 -5.428 -20.661 21.402 hybrid contribution -0.037 0.663 0.315 0.735 sum 1.256 -4.765 -20.347 20.935 Atomic orbital electron populations 1.25007 0.95931 0.98247 0.99874 1.23592 0.94932 1.01940 1.01126 1.19180 0.83201 0.85922 0.97629 0.88835 1.21643 0.96495 1.02629 0.93547 1.21620 0.94194 1.02944 0.97259 1.21600 0.95457 1.01625 0.96870 1.21545 0.95667 1.02030 0.97213 1.21778 1.00794 1.01415 0.97021 1.86090 1.80625 1.33713 1.21148 1.19123 0.97717 0.95353 0.81412 1.20337 1.05446 0.96375 0.95869 1.21393 0.96170 0.99121 0.90928 1.21828 0.98452 0.93582 0.99716 1.18069 0.81230 0.88236 0.83964 1.90499 1.48577 1.47321 1.57040 1.20903 1.37542 1.04269 0.92102 0.90790 1.26011 0.93788 0.97486 0.97112 1.69952 1.30968 1.32274 1.03231 0.86434 0.80393 0.82134 0.78014 1.18870 1.20285 1.18861 1.21178 0.95477 0.97113 0.93697 1.21082 1.08001 1.00073 0.94203 0.76370 0.89915 0.90478 0.90696 0.91736 0.92146 0.91947 0.91829 0.91995 0.92857 0.92897 0.92821 0.85963 0.84577 0.91444 0.85536 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 19.25 29.55 0.57 -1.46 16 2 C -0.22 -2.85 11.88 -37.12 -0.44 -3.29 16 3 C 0.20 2.48 2.12 -29.52 -0.06 2.42 16 4 H 0.09 1.14 6.34 -51.93 -0.33 0.81 16 5 C -0.11 -1.01 4.88 -26.74 -0.13 -1.14 16 6 C -0.12 -1.11 5.11 -26.74 -0.14 -1.25 16 7 C -0.12 -0.90 5.21 -26.73 -0.14 -1.04 16 8 C -0.13 -0.96 5.93 -26.73 -0.16 -1.12 16 9 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 10 O -0.30 -4.65 9.29 -18.69 -0.17 -4.82 16 11 C 0.11 1.91 6.60 -38.90 -0.26 1.66 16 12 C -0.16 -2.91 9.97 -39.47 -0.39 -3.30 16 13 C -0.06 -1.18 9.43 -39.18 -0.37 -1.55 16 14 C -0.13 -3.21 5.89 -104.81 -0.62 -3.82 16 15 C 0.39 11.11 6.91 -34.43 -0.24 10.87 16 16 O -0.54 -17.46 14.89 5.08 0.08 -17.38 16 17 C -0.52 -14.21 8.86 -37.45 -0.33 -14.54 16 18 H 0.07 1.82 6.01 -52.49 -0.32 1.51 16 19 C 0.08 2.14 5.50 -17.31 -0.10 2.04 16 20 N -0.74 -21.23 11.73 55.57 0.65 -20.58 16 21 Si 0.91 19.22 29.56 -169.99 -5.03 14.20 16 22 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 25 C -0.06 -1.22 9.59 -39.17 -0.38 -1.60 16 26 C -0.21 -3.95 8.66 -39.47 -0.34 -4.29 16 27 H 0.22 1.74 7.80 -54.09 -0.42 1.32 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.78 7.82 -51.93 -0.41 0.38 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 0.33 8.14 -51.92 -0.42 -0.10 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.14 2.63 6.19 -52.48 -0.33 2.31 16 41 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 42 H 0.13 2.81 7.65 -52.49 -0.40 2.41 16 43 H 0.12 1.89 5.64 -52.49 -0.30 1.59 16 LS Contribution 367.71 15.07 5.54 5.54 Total: -1.00 -33.00 367.71 -8.36 -41.36 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.28 Total: 3.74 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -3.15 Total: -22.06 kcal Atomic # 7 Polarization: -21.23 SS G_CDS: 0.65 Total: -20.58 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.10 Total: -22.20 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.00 -8.36 -41.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233526376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.912 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds