Wall clock time and date at job start Fri Apr 10 2020 20:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47190 * 317.91906 * 3 2 1 5 5 C 1.52996 * 109.47181 * 77.91827 * 3 2 1 6 6 C 1.52995 * 109.47375 * 184.99654 * 5 3 2 7 7 C 1.52996 * 109.47375 * 180.02562 * 6 5 3 8 8 C 1.53005 * 109.47372 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47372 * 179.97438 * 8 7 6 10 10 O 1.42900 * 109.46693 * 197.91389 * 3 2 1 11 11 C 1.35664 * 116.99514 * 84.30892 * 10 3 2 12 12 C 1.39165 * 119.90233 * 174.33529 * 11 10 3 13 13 C 1.37591 * 120.09302 * 179.75765 * 12 11 10 14 14 C 1.39949 * 119.90288 * 0.51677 * 13 12 11 15 15 C 1.47582 * 120.09341 * 179.71579 * 14 13 12 16 16 O 1.21819 * 119.99750 * 180.02562 * 15 14 13 17 17 C 1.41764 * 119.99737 * 0.02562 * 15 14 13 18 18 H 1.07993 * 119.99913 * 359.97438 * 17 15 14 19 19 C 1.40337 * 119.99430 * 179.97438 * 17 15 14 20 20 N 1.30532 * 120.00448 * 0.02562 * 19 17 15 21 21 Si 1.86808 * 119.99793 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46781 * 59.99787 * 21 19 17 23 23 H 1.48494 * 109.47191 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46898 * 300.00270 * 21 19 17 25 25 C 1.39947 * 119.81875 * 359.73972 * 14 13 12 26 26 C 1.37602 * 119.89836 * 359.97438 * 25 14 13 27 27 H 4.18739 * 15.03981 * 359.97438 * 4 2 1 28 28 H 1.09003 * 109.47302 * 304.99891 * 5 3 2 29 29 H 1.09004 * 109.47556 * 64.99457 * 5 3 2 30 30 H 1.09003 * 109.47099 * 300.00361 * 6 5 3 31 31 H 1.09004 * 109.46902 * 59.99981 * 6 5 3 32 32 H 1.09003 * 109.47302 * 300.00237 * 7 6 5 33 33 H 1.09004 * 109.47121 * 60.00115 * 7 6 5 34 34 H 1.09003 * 109.47062 * 300.00337 * 8 7 6 35 35 H 1.09004 * 109.46942 * 59.99959 * 8 7 6 36 36 H 1.08995 * 109.47477 * 180.02562 * 9 8 7 37 37 H 1.09007 * 109.46911 * 299.99918 * 9 8 7 38 38 H 1.08995 * 109.46981 * 59.99877 * 9 8 7 39 39 H 1.08001 * 119.95368 * 0.02562 * 12 11 10 40 40 H 1.08007 * 120.05150 * 180.25520 * 13 12 11 41 41 H 0.97000 * 119.99887 * 180.02562 * 20 19 17 42 42 H 1.07991 * 120.05590 * 180.02562 * 25 14 13 43 43 H 1.07996 * 119.94873 * 179.97438 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0097 -0.7619 0.6887 5 6 3.1562 -0.3010 -1.4105 6 6 4.6810 -0.4236 -1.3860 7 6 5.1912 -0.7246 -2.7967 8 6 6.7161 -0.8478 -2.7721 9 6 7.2262 -1.1495 -4.1826 10 8 3.1217 1.2829 0.4144 11 6 3.2138 1.5034 1.7498 12 6 3.7796 2.6845 2.2206 13 6 3.8704 2.9144 3.5741 14 6 3.4027 1.9536 4.4779 15 6 3.5038 2.1932 5.9306 16 8 3.0966 1.3555 6.7158 17 6 4.0748 3.3980 6.4123 18 1 4.4362 4.1403 5.7162 19 6 4.1704 3.6259 7.7937 20 7 3.7341 2.7284 8.6351 21 14 4.9222 5.2139 8.4285 22 1 4.1347 6.3691 7.9279 23 1 4.9068 5.2099 9.9134 24 1 6.3232 5.3247 7.9487 25 6 2.8393 0.7649 4.0003 26 6 2.7470 0.5457 2.6451 27 1 -1.0500 -0.0003 0.0009 28 1 2.7220 -1.2372 -1.7614 29 1 2.8674 0.5075 -2.0821 30 1 5.1152 0.5126 -1.0351 31 1 4.9698 -1.2322 -0.7145 32 1 4.7571 -1.6607 -3.1480 33 1 4.9025 0.0843 -3.4678 34 1 7.1506 0.0880 -2.4206 35 1 7.0045 -1.6570 -2.1010 36 1 8.3125 -1.2377 -4.1650 37 1 6.7917 -2.0856 -4.5336 38 1 6.9378 -0.3408 -4.8540 39 1 4.1439 3.4236 1.5224 40 1 4.3059 3.8331 3.9387 41 1 3.7999 2.8862 9.5899 42 1 2.4769 0.0212 4.6943 43 1 2.3128 -0.3715 2.2756 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233526376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:02 Heat of formation + Delta-G solvation = -43.688004 kcal Electronic energy + Delta-G solvation = -22810.913709 eV Core-core repulsion = 19400.374544 eV Total energy + Delta-G solvation = -3410.539166 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.33842 -39.49167 -37.87911 -36.90640 -34.88489 -34.73857 -33.00801 -32.09928 -31.21621 -29.31141 -28.53918 -25.74541 -24.36821 -23.56071 -22.12643 -21.84190 -21.50870 -19.89348 -19.07951 -18.51860 -17.55655 -16.82899 -16.58862 -16.54760 -16.05000 -15.62609 -15.22798 -14.86325 -14.79804 -14.64205 -14.37620 -14.24718 -14.03365 -13.68346 -13.57107 -13.41272 -12.97005 -12.85681 -12.76482 -12.49961 -12.44506 -12.16807 -12.08105 -11.92912 -11.84504 -11.73972 -11.65989 -11.37721 -11.33067 -11.05829 -10.97624 -9.97094 -9.62809 -9.10301 -8.34521 -7.07783 0.19925 0.44389 1.38844 1.41317 1.42936 1.54391 1.73877 2.19719 2.21556 2.48945 2.83397 3.21802 3.73904 3.75558 3.80758 3.90530 3.99079 4.06311 4.13938 4.26530 4.33676 4.35172 4.50197 4.52630 4.57450 4.68558 4.80450 4.83906 4.88468 4.98452 5.02695 5.08391 5.09009 5.17245 5.19237 5.26343 5.30814 5.38319 5.42269 5.48335 5.55281 5.72496 5.77789 5.97869 6.39798 6.53396 6.69521 6.79798 8.24672 8.48905 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.017704 B = 0.002812 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.218800 B = 9955.472750 C =10918.734427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.259 4.259 3 C 0.189 3.811 4 H 0.096 0.904 5 C -0.097 4.097 6 C -0.121 4.121 7 C -0.113 4.113 8 C -0.129 4.129 9 C -0.152 4.152 10 O -0.299 6.299 11 C 0.127 3.873 12 C -0.156 4.156 13 C -0.053 4.053 14 C -0.176 4.176 15 C 0.364 3.636 16 O -0.601 6.601 17 C -0.542 4.542 18 H 0.098 0.902 19 C 0.021 3.979 20 N -0.788 5.788 21 Si 0.997 3.003 22 H -0.250 1.250 23 H -0.271 1.271 24 H -0.250 1.250 25 C -0.068 4.068 26 C -0.208 4.208 27 H 0.250 0.750 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.157 0.843 40 H 0.145 0.855 41 H 0.282 0.718 42 H 0.107 0.893 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.879 -3.769 -23.693 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.259 4.259 3 C 0.134 3.866 4 H 0.113 0.887 5 C -0.134 4.134 6 C -0.158 4.158 7 C -0.151 4.151 8 C -0.167 4.167 9 C -0.209 4.209 10 O -0.213 6.213 11 C 0.081 3.919 12 C -0.174 4.174 13 C -0.071 4.071 14 C -0.178 4.178 15 C 0.264 3.736 16 O -0.497 6.497 17 C -0.573 4.573 18 H 0.116 0.884 19 C -0.198 4.198 20 N -0.417 5.417 21 Si 0.815 3.185 22 H -0.174 1.174 23 H -0.195 1.195 24 H -0.173 1.173 25 C -0.086 4.086 26 C -0.226 4.226 27 H 0.267 0.733 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.174 0.826 40 H 0.162 0.838 41 H 0.092 0.908 42 H 0.125 0.875 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.702 -4.141 -23.372 23.797 hybrid contribution -0.245 0.162 0.964 1.008 sum 1.457 -3.979 -22.408 22.805 Atomic orbital electron populations 1.25876 0.96873 0.96337 0.98260 1.23874 0.95589 1.03685 1.02737 1.19513 0.83488 0.84399 0.99248 0.88675 1.21652 0.96639 1.03557 0.91576 1.21599 0.93878 1.02145 0.98221 1.21559 0.95393 1.02222 0.95882 1.21559 0.95723 1.01609 0.97796 1.21770 1.00977 1.01773 0.96399 1.86115 1.80284 1.35627 1.19283 1.19217 0.95552 0.94634 0.82464 1.20603 1.04490 0.97109 0.95206 1.21414 0.95619 0.98508 0.91577 1.21481 1.02448 0.96028 0.97798 1.18806 0.80442 0.88219 0.86108 1.90437 1.51142 1.48938 1.59136 1.21440 1.37658 1.04650 0.93505 0.88418 1.27326 0.93575 1.01848 0.97015 1.70109 1.32346 1.35261 1.04023 0.85083 0.79775 0.76233 0.77439 1.17392 1.19517 1.17319 1.21086 0.96170 0.96369 0.95013 1.21172 1.07569 1.01216 0.92666 0.73349 0.87955 0.90372 0.92246 0.91756 0.91113 0.91684 0.92549 0.92209 0.92656 0.92358 0.92575 0.82579 0.83751 0.90755 0.87508 0.84223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 19.25 74.32 1.43 -1.81 16 2 C -0.26 -6.24 11.88 31.13 0.37 -5.87 16 3 C 0.19 4.37 2.12 28.79 0.06 4.43 16 4 H 0.10 2.16 6.34 -2.39 -0.02 2.14 16 5 C -0.10 -1.62 4.88 30.59 0.15 -1.47 16 6 C -0.12 -1.96 5.11 30.59 0.16 -1.81 16 7 C -0.11 -1.48 5.21 30.59 0.16 -1.32 16 8 C -0.13 -1.76 5.93 30.59 0.18 -1.57 16 9 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 10 O -0.30 -8.52 9.29 -89.80 -0.83 -9.36 16 11 C 0.13 4.25 6.60 22.71 0.15 4.40 16 12 C -0.16 -5.28 9.97 22.34 0.22 -5.06 16 13 C -0.05 -2.15 9.43 22.53 0.21 -1.94 16 14 C -0.18 -8.73 5.89 -19.98 -0.12 -8.84 16 15 C 0.36 21.91 6.91 25.61 0.18 22.09 16 16 O -0.60 -41.32 14.89 -4.73 -0.07 -41.39 16 17 C -0.54 -30.59 8.86 23.65 0.21 -30.38 16 18 H 0.10 4.82 6.01 -2.91 -0.02 4.81 16 19 C 0.02 1.16 5.50 85.40 0.47 1.63 16 20 N -0.79 -47.37 11.73 21.89 0.26 -47.11 16 21 Si 1.00 39.32 29.56 68.60 2.03 41.35 16 22 H -0.25 -9.25 7.11 99.48 0.71 -8.55 16 23 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 24 H -0.25 -9.20 7.11 99.48 0.71 -8.50 16 25 C -0.07 -3.07 9.59 22.53 0.22 -2.85 16 26 C -0.21 -7.53 8.66 22.34 0.19 -7.34 16 27 H 0.25 3.10 7.80 -4.42 -0.03 3.06 16 28 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.06 1.15 7.82 -2.39 -0.02 1.13 16 31 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.16 4.24 8.06 -2.91 -0.02 4.21 16 40 H 0.14 5.47 6.19 -2.91 -0.02 5.45 16 41 H 0.28 15.14 8.29 -92.71 -0.77 14.37 16 42 H 0.11 5.13 7.65 -2.92 -0.02 5.10 16 43 H 0.14 4.36 5.64 -2.91 -0.02 4.34 16 Total: -1.00 -75.93 367.71 7.33 -68.60 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.99 Total: 26.66 kcal Atomic # 6 Polarization: -43.70 SS G_CDS: 4.95 Total: -38.75 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.26 Total: -47.11 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -0.91 Total: -50.75 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -75.93 7.33 -68.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233526376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.912 kcal (2) G-P(sol) polarization free energy of solvation -75.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds