Wall clock time and date at job start Fri Apr 10 2020 20:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.08998 * 109.46820 * 223.62105 * 3 2 1 5 5 C 1.53001 * 109.47078 * 103.62100 * 3 2 1 6 6 C 1.52997 * 109.46808 * 174.99942 * 5 3 2 7 7 C 1.53005 * 109.47144 * 180.02562 * 6 5 3 8 8 C 1.52997 * 109.47144 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.46808 * 179.97438 * 8 7 6 10 10 O 1.42897 * 109.47034 * 343.61875 * 3 2 1 11 11 C 1.35657 * 117.00115 * 275.65424 * 10 3 2 12 12 C 1.39166 * 119.90665 * 5.42934 * 11 10 3 13 13 C 1.37594 * 120.09293 * 179.97438 * 12 11 10 14 14 C 1.39945 * 119.90907 * 0.27914 * 13 12 11 15 15 C 1.47574 * 120.09648 * 179.69679 * 14 13 12 16 16 O 1.21821 * 119.99658 * 0.02562 * 15 14 13 17 17 C 1.41761 * 120.00089 * 179.97438 * 15 14 13 18 18 H 1.08002 * 119.99677 * 0.02562 * 17 15 14 19 19 C 1.40341 * 119.99888 * 180.02562 * 17 15 14 20 20 N 1.30529 * 120.00124 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99934 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47159 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46758 * 120.00034 * 21 19 17 24 24 H 1.48495 * 109.47295 * 240.00620 * 21 19 17 25 25 C 1.39954 * 119.80919 * 359.44706 * 14 13 12 26 26 C 1.37589 * 119.90630 * 0.53263 * 25 14 13 27 27 H 4.18738 * 15.03845 * 359.97438 * 4 2 1 28 28 H 1.08999 * 109.46856 * 294.99507 * 5 3 2 29 29 H 1.09000 * 109.47061 * 54.99766 * 5 3 2 30 30 H 1.09000 * 109.47701 * 299.99834 * 6 5 3 31 31 H 1.09000 * 109.47454 * 60.00064 * 6 5 3 32 32 H 1.08999 * 109.46630 * 299.99632 * 7 6 5 33 33 H 1.09000 * 109.46951 * 59.99685 * 7 6 5 34 34 H 1.08995 * 109.47235 * 299.99850 * 8 7 6 35 35 H 1.09000 * 109.47454 * 59.99993 * 8 7 6 36 36 H 1.09010 * 109.46878 * 180.02562 * 9 8 7 37 37 H 1.09007 * 109.47161 * 299.99547 * 9 8 7 38 38 H 1.08998 * 109.47771 * 60.00039 * 9 8 7 39 39 H 1.07995 * 119.94949 * 359.97438 * 12 11 10 40 40 H 1.07999 * 120.04456 * 179.97438 * 13 12 11 41 41 H 0.97000 * 120.00349 * 179.97438 * 20 19 17 42 42 H 1.08006 * 120.04823 * 180.25353 * 25 14 13 43 43 H 1.08000 * 119.95689 * 179.74701 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.7448 0.7090 5 6 3.1559 0.3406 -1.4019 6 6 4.6806 0.4639 -1.3740 7 6 5.1905 0.8045 -2.7758 8 6 6.7153 0.9271 -2.7481 9 6 7.2251 1.2671 -4.1500 10 8 3.1229 -1.2917 0.3800 11 6 3.2160 -1.5476 1.7089 12 6 2.7488 -0.6145 2.6296 13 6 2.8409 -0.8704 3.9784 14 6 3.4106 -2.0683 4.4241 15 6 3.5175 -2.3441 5.8699 16 8 3.1090 -1.5284 6.6773 17 6 4.0946 -3.5585 6.3192 18 1 4.4563 -4.2817 5.6033 19 6 4.1957 -3.8209 7.6941 20 7 3.7581 -2.9470 8.5593 21 14 4.9555 -5.4215 8.2861 22 1 5.3696 -6.2357 7.1153 23 1 6.1430 -5.1245 9.1268 24 1 3.9584 -6.1764 9.0867 25 6 3.8740 -3.0065 3.4947 26 6 3.7778 -2.7429 2.1477 27 1 -1.0500 -0.0003 -0.0009 28 1 2.8679 -0.4500 -2.0948 29 1 2.7208 1.2855 -1.7276 30 1 4.9687 1.2544 -0.6811 31 1 5.1157 -0.4810 -1.0484 32 1 4.9025 0.0142 -3.4691 33 1 4.7554 1.7495 -3.1011 34 1 7.0037 1.7171 -2.0547 35 1 7.1500 -0.0181 -2.4231 36 1 8.3116 1.3540 -4.1303 37 1 6.9368 0.4766 -4.8431 38 1 6.7905 2.2121 -4.4756 39 1 2.3133 0.3117 2.2849 40 1 2.4784 -0.1455 4.6923 41 1 3.8276 -3.1285 9.5096 42 1 4.3107 -3.9341 3.8343 43 1 4.1388 -3.4645 1.4298 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233526377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:05 Heat of formation + Delta-G solvation = -26.448611 kcal Electronic energy + Delta-G solvation = -22810.826939 eV Core-core repulsion = 19401.035330 eV Total energy + Delta-G solvation = -3409.791609 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.00665 -37.86244 -36.49881 -35.66800 -33.87724 -32.68744 -32.22460 -30.51608 -29.65447 -28.35698 -26.59382 -24.90878 -22.65960 -22.29979 -21.35947 -21.02508 -19.67849 -18.71099 -17.90427 -16.66179 -15.97187 -15.65029 -15.55247 -15.37520 -14.42626 -14.34665 -14.06110 -13.75675 -13.66072 -13.31992 -13.04209 -12.84577 -12.59993 -12.51082 -12.15676 -12.05671 -11.73137 -11.69157 -11.26344 -11.19678 -11.18601 -11.12184 -11.01902 -10.78996 -10.70396 -10.52158 -10.44464 -10.33972 -10.18990 -9.90027 -8.98876 -8.41616 -7.49216 -7.48229 -6.30980 -4.90944 1.84569 2.01123 2.45516 2.67191 3.03597 3.12867 3.17345 3.61118 3.98149 4.00293 4.11657 4.54329 4.64966 4.66751 4.73220 4.87506 5.00663 5.03757 5.22820 5.33649 5.40262 5.42791 5.49056 5.53793 5.65026 5.67633 5.78367 5.80455 5.81636 5.85053 5.92281 5.98739 6.05315 6.11602 6.14226 6.19216 6.33205 6.64410 6.85690 7.04690 7.24289 7.33192 7.38470 7.45313 7.81953 8.03716 8.78805 8.84062 10.30737 10.52907 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.017655 B = 0.002814 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.582366 B = 9947.423369 C =10914.601242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.216 4.216 3 C 0.197 3.803 4 H 0.094 0.906 5 C -0.106 4.106 6 C -0.123 4.123 7 C -0.118 4.118 8 C -0.127 4.127 9 C -0.153 4.153 10 O -0.301 6.301 11 C 0.108 3.892 12 C -0.215 4.215 13 C -0.056 4.056 14 C -0.135 4.135 15 C 0.388 3.612 16 O -0.544 6.544 17 C -0.516 4.516 18 H 0.075 0.925 19 C 0.079 3.921 20 N -0.735 5.735 21 Si 0.906 3.094 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.273 1.273 25 C -0.058 4.058 26 C -0.162 4.162 27 H 0.220 0.780 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.118 0.882 40 H 0.127 0.873 41 H 0.273 0.727 42 H 0.137 0.863 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.428 5.601 -20.909 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.216 4.216 3 C 0.141 3.859 4 H 0.112 0.888 5 C -0.143 4.143 6 C -0.160 4.160 7 C -0.156 4.156 8 C -0.165 4.165 9 C -0.210 4.210 10 O -0.216 6.216 11 C 0.064 3.936 12 C -0.234 4.234 13 C -0.075 4.075 14 C -0.136 4.136 15 C 0.285 3.715 16 O -0.434 6.434 17 C -0.548 4.548 18 H 0.093 0.907 19 C -0.144 4.144 20 N -0.364 5.364 21 Si 0.730 3.270 22 H -0.183 1.183 23 H -0.198 1.198 24 H -0.198 1.198 25 C -0.076 4.076 26 C -0.180 4.180 27 H 0.236 0.764 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.135 0.865 40 H 0.145 0.855 41 H 0.084 0.916 42 H 0.154 0.846 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.249 5.956 -20.541 21.424 hybrid contribution -0.037 -0.657 0.315 0.730 sum 1.212 5.299 -20.226 20.944 Atomic orbital electron populations 1.25007 0.95930 0.98206 0.99918 1.23592 0.94931 1.01960 1.01105 1.19181 0.83190 0.85574 0.97991 0.88835 1.21643 0.96497 1.02443 0.93727 1.21621 0.94197 1.02887 0.97313 1.21599 0.95459 1.01552 0.96944 1.21543 0.95667 1.01975 0.97269 1.21781 1.00794 1.01356 0.97079 1.86086 1.80579 1.33185 1.21724 1.19127 0.97735 0.95236 0.81502 1.21081 1.07988 1.00251 0.94047 1.21176 0.95458 0.96913 0.93916 1.21827 0.98434 0.93677 0.99651 1.18083 0.81264 0.88180 0.84007 1.90500 1.48624 1.49018 1.55279 1.20968 1.37275 1.04325 0.92191 0.90698 1.26018 0.93807 0.97627 0.96973 1.69970 1.31108 1.32785 1.02543 0.86326 0.79291 0.81868 0.79521 1.18315 1.19838 1.19848 1.21396 0.96161 0.99218 0.90824 1.20337 1.05515 0.96055 0.96123 0.76370 0.90477 0.89914 0.91742 0.90691 0.91954 0.92137 0.91989 0.91833 0.92858 0.92826 0.92891 0.86454 0.85541 0.91556 0.84570 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 19.25 29.55 0.57 -1.46 16 2 C -0.22 -2.85 11.88 -37.12 -0.44 -3.29 16 3 C 0.20 2.48 2.12 -29.52 -0.06 2.42 16 4 H 0.09 1.14 6.34 -51.93 -0.33 0.81 16 5 C -0.11 -1.01 4.88 -26.73 -0.13 -1.14 16 6 C -0.12 -1.11 5.11 -26.73 -0.14 -1.25 16 7 C -0.12 -0.90 5.21 -26.73 -0.14 -1.04 16 8 C -0.13 -0.96 5.93 -26.73 -0.16 -1.12 16 9 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 10 O -0.30 -4.65 9.29 -18.67 -0.17 -4.82 16 11 C 0.11 1.91 6.60 -38.89 -0.26 1.66 16 12 C -0.22 -3.95 8.66 -39.47 -0.34 -4.29 16 13 C -0.06 -1.22 9.59 -39.18 -0.38 -1.60 16 14 C -0.13 -3.21 5.89 -104.81 -0.62 -3.83 16 15 C 0.39 11.09 6.91 -34.43 -0.24 10.86 16 16 O -0.54 -17.45 14.89 5.08 0.08 -17.38 16 17 C -0.52 -14.19 8.86 -37.45 -0.33 -14.52 16 18 H 0.07 1.86 6.01 -52.49 -0.32 1.54 16 19 C 0.08 2.12 5.50 -17.31 -0.10 2.03 16 20 N -0.74 -21.22 11.73 55.57 0.65 -20.57 16 21 Si 0.91 19.22 29.56 -169.99 -5.03 14.19 16 22 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 C -0.06 -1.18 9.43 -39.18 -0.37 -1.55 16 26 C -0.16 -2.91 9.97 -39.47 -0.39 -3.30 16 27 H 0.22 1.74 7.80 -54.09 -0.42 1.31 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.79 7.82 -51.93 -0.41 0.38 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 37 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.12 1.89 5.64 -52.49 -0.30 1.59 16 40 H 0.13 2.81 7.65 -52.49 -0.40 2.41 16 41 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 42 H 0.14 2.64 6.19 -52.48 -0.33 2.32 16 43 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 367.71 15.07 5.54 5.54 Total: -1.00 -33.03 367.71 -8.36 -41.39 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.28 Total: 3.70 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -3.15 Total: -22.06 kcal Atomic # 7 Polarization: -21.22 SS G_CDS: 0.65 Total: -20.57 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.10 Total: -22.20 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.03 -8.36 -41.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233526377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.945 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds