Wall clock time and date at job start Fri Apr 10 2020 20:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.08998 * 109.46820 * 223.62105 * 3 2 1 5 5 C 1.53001 * 109.47078 * 103.62100 * 3 2 1 6 6 C 1.52997 * 109.46808 * 174.99942 * 5 3 2 7 7 C 1.53005 * 109.47144 * 180.02562 * 6 5 3 8 8 C 1.52997 * 109.47144 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.46808 * 179.97438 * 8 7 6 10 10 O 1.42897 * 109.47034 * 343.61875 * 3 2 1 11 11 C 1.35657 * 117.00115 * 275.65424 * 10 3 2 12 12 C 1.39166 * 119.90665 * 5.42934 * 11 10 3 13 13 C 1.37594 * 120.09293 * 179.97438 * 12 11 10 14 14 C 1.39945 * 119.90907 * 0.27914 * 13 12 11 15 15 C 1.47574 * 120.09648 * 179.69679 * 14 13 12 16 16 O 1.21821 * 119.99658 * 0.02562 * 15 14 13 17 17 C 1.41761 * 120.00089 * 179.97438 * 15 14 13 18 18 H 1.08002 * 119.99677 * 0.02562 * 17 15 14 19 19 C 1.40341 * 119.99888 * 180.02562 * 17 15 14 20 20 N 1.30529 * 120.00124 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99934 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47159 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46758 * 120.00034 * 21 19 17 24 24 H 1.48495 * 109.47295 * 240.00620 * 21 19 17 25 25 C 1.39954 * 119.80919 * 359.44706 * 14 13 12 26 26 C 1.37589 * 119.90630 * 0.53263 * 25 14 13 27 27 H 4.18738 * 15.03845 * 359.97438 * 4 2 1 28 28 H 1.08999 * 109.46856 * 294.99507 * 5 3 2 29 29 H 1.09000 * 109.47061 * 54.99766 * 5 3 2 30 30 H 1.09000 * 109.47701 * 299.99834 * 6 5 3 31 31 H 1.09000 * 109.47454 * 60.00064 * 6 5 3 32 32 H 1.08999 * 109.46630 * 299.99632 * 7 6 5 33 33 H 1.09000 * 109.46951 * 59.99685 * 7 6 5 34 34 H 1.08995 * 109.47235 * 299.99850 * 8 7 6 35 35 H 1.09000 * 109.47454 * 59.99993 * 8 7 6 36 36 H 1.09010 * 109.46878 * 180.02562 * 9 8 7 37 37 H 1.09007 * 109.47161 * 299.99547 * 9 8 7 38 38 H 1.08998 * 109.47771 * 60.00039 * 9 8 7 39 39 H 1.07995 * 119.94949 * 359.97438 * 12 11 10 40 40 H 1.07999 * 120.04456 * 179.97438 * 13 12 11 41 41 H 0.97000 * 120.00349 * 179.97438 * 20 19 17 42 42 H 1.08006 * 120.04823 * 180.25353 * 25 14 13 43 43 H 1.08000 * 119.95689 * 179.74701 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.7448 0.7090 5 6 3.1559 0.3406 -1.4019 6 6 4.6806 0.4639 -1.3740 7 6 5.1905 0.8045 -2.7758 8 6 6.7153 0.9271 -2.7481 9 6 7.2251 1.2671 -4.1500 10 8 3.1229 -1.2917 0.3800 11 6 3.2160 -1.5476 1.7089 12 6 2.7488 -0.6145 2.6296 13 6 2.8409 -0.8704 3.9784 14 6 3.4106 -2.0683 4.4241 15 6 3.5175 -2.3441 5.8699 16 8 3.1090 -1.5284 6.6773 17 6 4.0946 -3.5585 6.3192 18 1 4.4563 -4.2817 5.6033 19 6 4.1957 -3.8209 7.6941 20 7 3.7581 -2.9470 8.5593 21 14 4.9555 -5.4215 8.2861 22 1 5.3696 -6.2357 7.1153 23 1 6.1430 -5.1245 9.1268 24 1 3.9584 -6.1764 9.0867 25 6 3.8740 -3.0065 3.4947 26 6 3.7778 -2.7429 2.1477 27 1 -1.0500 -0.0003 -0.0009 28 1 2.8679 -0.4500 -2.0948 29 1 2.7208 1.2855 -1.7276 30 1 4.9687 1.2544 -0.6811 31 1 5.1157 -0.4810 -1.0484 32 1 4.9025 0.0142 -3.4691 33 1 4.7554 1.7495 -3.1011 34 1 7.0037 1.7171 -2.0547 35 1 7.1500 -0.0181 -2.4231 36 1 8.3116 1.3540 -4.1303 37 1 6.9368 0.4766 -4.8431 38 1 6.7905 2.2121 -4.4756 39 1 2.3133 0.3117 2.2849 40 1 2.4784 -0.1455 4.6923 41 1 3.8276 -3.1285 9.5096 42 1 4.3107 -3.9341 3.8343 43 1 4.1388 -3.4645 1.4298 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233526377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:05 Heat of formation + Delta-G solvation = -43.719207 kcal Electronic energy + Delta-G solvation = -22811.575849 eV Core-core repulsion = 19401.035330 eV Total energy + Delta-G solvation = -3410.540519 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.33902 -39.49281 -37.88001 -36.90694 -34.88600 -34.74025 -33.00746 -32.09971 -31.21670 -29.31120 -28.54115 -25.74558 -24.36959 -23.56096 -22.12682 -21.84211 -21.51071 -19.89313 -19.08028 -18.52408 -17.56172 -16.82805 -16.58855 -16.54886 -16.04096 -15.62504 -15.23230 -14.86411 -14.79895 -14.64682 -14.37569 -14.24987 -14.03487 -13.68122 -13.57079 -13.41717 -12.96834 -12.86742 -12.80529 -12.49107 -12.44388 -12.17228 -12.01533 -11.92267 -11.84123 -11.73993 -11.65898 -11.37664 -11.33078 -11.05842 -11.00942 -9.97140 -9.62580 -9.10264 -8.34962 -7.07792 0.19792 0.44406 1.37705 1.38991 1.42939 1.57776 1.73910 2.19413 2.21389 2.48898 2.83221 3.21839 3.73788 3.75544 3.80756 3.90497 3.99085 4.06360 4.13911 4.26478 4.33665 4.35191 4.50196 4.52631 4.57426 4.68585 4.80470 4.83932 4.88479 4.98461 5.02709 5.08410 5.09035 5.17237 5.19473 5.26364 5.30813 5.38315 5.42277 5.48361 5.55307 5.72487 5.77848 5.98390 6.39804 6.53425 6.69681 6.79681 8.24524 8.48852 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.017655 B = 0.002814 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.582366 B = 9947.423369 C =10914.601242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.259 4.259 3 C 0.189 3.811 4 H 0.096 0.904 5 C -0.097 4.097 6 C -0.121 4.121 7 C -0.113 4.113 8 C -0.129 4.129 9 C -0.152 4.152 10 O -0.299 6.299 11 C 0.127 3.873 12 C -0.208 4.208 13 C -0.068 4.068 14 C -0.176 4.176 15 C 0.364 3.636 16 O -0.601 6.601 17 C -0.541 4.541 18 H 0.098 0.902 19 C 0.021 3.979 20 N -0.788 5.788 21 Si 0.997 3.003 22 H -0.241 1.241 23 H -0.265 1.265 24 H -0.265 1.265 25 C -0.053 4.053 26 C -0.156 4.156 27 H 0.250 0.750 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.140 0.860 40 H 0.107 0.893 41 H 0.282 0.718 42 H 0.145 0.855 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.827 4.395 -23.619 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.259 4.259 3 C 0.134 3.866 4 H 0.113 0.887 5 C -0.134 4.134 6 C -0.158 4.158 7 C -0.151 4.151 8 C -0.167 4.167 9 C -0.209 4.209 10 O -0.213 6.213 11 C 0.081 3.919 12 C -0.226 4.226 13 C -0.086 4.086 14 C -0.178 4.178 15 C 0.264 3.736 16 O -0.496 6.496 17 C -0.571 4.571 18 H 0.116 0.884 19 C -0.198 4.198 20 N -0.418 5.418 21 Si 0.815 3.185 22 H -0.164 1.164 23 H -0.189 1.189 24 H -0.190 1.190 25 C -0.071 4.071 26 C -0.174 4.174 27 H 0.267 0.733 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.158 0.842 40 H 0.125 0.875 41 H 0.092 0.908 42 H 0.162 0.838 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.651 4.754 -23.297 23.835 hybrid contribution -0.244 -0.177 0.985 1.031 sum 1.407 4.577 -22.312 22.820 Atomic orbital electron populations 1.25877 0.96872 0.96286 0.98304 1.23872 0.95587 1.03712 1.02718 1.19513 0.83480 0.84022 0.99634 0.88678 1.21652 0.96639 1.03357 0.91771 1.21600 0.93883 1.02085 0.98279 1.21559 0.95394 1.02140 0.95964 1.21556 0.95725 1.01557 0.97847 1.21774 1.00976 1.01707 0.96464 1.86111 1.80240 1.35104 1.19852 1.19219 0.95562 0.94553 0.82521 1.21172 1.07555 1.01371 0.92527 1.21085 0.96139 0.96204 0.95201 1.21478 1.02416 0.96071 0.97792 1.18817 0.80479 0.88214 0.86085 1.90438 1.51187 1.50613 1.57398 1.21489 1.37397 1.04655 0.93589 0.88423 1.27330 0.93637 1.02068 0.96765 1.70118 1.32461 1.35762 1.03416 0.84983 0.78240 0.75912 0.79362 1.16361 1.18947 1.19007 1.21411 0.95626 0.98653 0.91403 1.20601 1.04554 0.96748 0.95512 0.73344 0.90370 0.87951 0.91762 0.92244 0.91691 0.91101 0.92204 0.92555 0.92658 0.92580 0.92351 0.84219 0.87507 0.90764 0.83788 0.82591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 19.25 74.32 1.43 -1.80 16 2 C -0.26 -6.23 11.88 31.13 0.37 -5.86 16 3 C 0.19 4.37 2.12 28.79 0.06 4.43 16 4 H 0.10 2.15 6.34 -2.39 -0.02 2.14 16 5 C -0.10 -1.62 4.88 30.59 0.15 -1.47 16 6 C -0.12 -1.97 5.11 30.59 0.16 -1.81 16 7 C -0.11 -1.48 5.21 30.59 0.16 -1.32 16 8 C -0.13 -1.76 5.93 30.59 0.18 -1.57 16 9 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 10 O -0.30 -8.52 9.29 -89.72 -0.83 -9.36 16 11 C 0.13 4.26 6.60 22.72 0.15 4.41 16 12 C -0.21 -7.53 8.66 22.34 0.19 -7.34 16 13 C -0.07 -3.06 9.59 22.53 0.22 -2.84 16 14 C -0.18 -8.72 5.89 -19.98 -0.12 -8.84 16 15 C 0.36 21.90 6.91 25.61 0.18 22.07 16 16 O -0.60 -41.30 14.89 -4.74 -0.07 -41.37 16 17 C -0.54 -30.51 8.86 23.65 0.21 -30.30 16 18 H 0.10 4.84 6.01 -2.91 -0.02 4.82 16 19 C 0.02 1.13 5.50 85.40 0.47 1.60 16 20 N -0.79 -47.35 11.73 21.89 0.26 -47.10 16 21 Si 1.00 39.36 29.56 68.60 2.03 41.38 16 22 H -0.24 -8.70 7.11 99.48 0.71 -8.00 16 23 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 24 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 25 C -0.05 -2.14 9.43 22.53 0.21 -1.93 16 26 C -0.16 -5.29 9.97 22.34 0.22 -5.06 16 27 H 0.25 3.09 7.80 -4.42 -0.03 3.05 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.15 7.82 -2.39 -0.02 1.13 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 36 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.14 4.36 5.64 -2.91 -0.02 4.34 16 40 H 0.11 5.12 7.65 -2.91 -0.02 5.10 16 41 H 0.28 15.04 8.29 -92.71 -0.77 14.27 16 42 H 0.14 5.47 6.19 -2.91 -0.02 5.45 16 43 H 0.16 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -75.97 367.71 7.33 -68.64 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.99 Total: 26.49 kcal Atomic # 6 Polarization: -43.64 SS G_CDS: 4.95 Total: -38.69 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.26 Total: -47.10 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -0.90 Total: -50.73 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.38 kcal Total: -75.97 7.33 -68.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233526377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.920 kcal (2) G-P(sol) polarization free energy of solvation -75.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds