Wall clock time and date at job start Fri Apr 10 2020 20:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00140 * 2 1 4 4 C 1.50702 * 119.99994 * 179.97438 * 2 1 3 5 5 C 1.52993 * 109.47100 * 94.99895 * 4 2 1 6 6 H 1.08997 * 109.47429 * 55.00671 * 5 4 2 7 7 O 1.42896 * 109.47235 * 294.99828 * 5 4 2 8 8 C 1.35640 * 116.99785 * 153.66719 * 7 5 4 9 9 C 1.38672 * 120.16071 * 5.23114 * 8 7 5 10 10 C 1.38094 * 120.08909 * 179.74858 * 9 8 7 11 11 C 1.38688 * 120.41524 * 0.55407 * 10 9 8 12 12 C 1.37696 * 120.32423 * 359.70370 * 11 10 9 13 13 C 1.39852 * 119.90220 * 0.02562 * 12 11 10 14 14 C 1.47532 * 120.20811 * 180.02562 * 13 12 11 15 15 O 1.21808 * 120.00101 * 179.97438 * 14 13 12 16 16 C 1.41836 * 119.99836 * 359.97336 * 14 13 12 17 17 H 1.07998 * 120.00093 * 6.79295 * 16 14 13 18 18 C 1.40318 * 119.99785 * 186.79455 * 16 14 13 19 19 N 1.30547 * 120.00214 * 353.87626 * 18 16 14 20 20 Si 1.86805 * 119.99877 * 173.87341 * 18 16 14 21 21 H 1.48499 * 109.47063 * 94.98632 * 20 18 16 22 22 H 1.48498 * 109.47153 * 214.98525 * 20 18 16 23 23 H 1.48500 * 109.46984 * 334.98496 * 20 18 16 24 24 C 1.50703 * 109.46883 * 174.99740 * 5 4 2 25 25 C 1.31001 * 120.00297 * 245.00062 * 24 5 4 26 26 C 1.50704 * 119.99816 * 65.00227 * 24 5 4 27 27 H 1.08002 * 120.00049 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00137 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46891 * 240.00128 * 3 2 1 30 30 H 1.09008 * 109.46802 * 359.97438 * 3 2 1 31 31 H 1.08996 * 109.47315 * 119.99491 * 3 2 1 32 32 H 1.09001 * 109.46636 * 335.00027 * 4 2 1 33 33 H 1.09001 * 109.46456 * 215.00392 * 4 2 1 34 34 H 1.07998 * 119.95149 * 0.02562 * 9 8 7 35 35 H 1.07997 * 119.78827 * 180.25286 * 10 9 8 36 36 H 1.08003 * 119.83663 * 179.72339 * 11 10 9 37 37 H 1.07999 * 120.05497 * 180.02562 * 12 11 10 38 38 H 0.96996 * 119.99949 * 179.97438 * 19 18 16 39 39 H 1.07997 * 119.99956 * 0.02562 * 25 24 5 40 40 H 1.08006 * 119.99696 * 180.02562 * 25 24 5 41 41 H 1.09001 * 109.47236 * 89.99735 * 26 24 5 42 42 H 1.08999 * 109.47282 * 330.00157 * 26 24 5 43 43 H 1.08998 * 109.47176 * 210.00110 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6846 -1.4362 6 1 2.9771 -0.8657 -1.9002 7 8 1.2332 -1.9379 -2.1789 8 6 1.2905 -1.7475 -3.5207 9 6 2.4960 -1.4309 -4.1286 10 6 2.5536 -1.2426 -5.4954 11 6 1.4081 -1.3566 -6.2688 12 6 0.2011 -1.6651 -5.6823 13 6 0.1284 -1.8642 -4.2999 14 6 -1.1612 -2.1956 -3.6646 15 8 -1.2201 -2.3686 -2.4603 16 6 -2.3324 -2.3126 -4.4560 17 1 -2.2631 -2.2682 -5.5329 18 6 -3.5811 -2.4859 -3.8399 19 7 -3.6530 -2.6593 -2.5479 20 14 -5.1405 -2.4685 -4.8682 21 1 -5.5171 -3.8612 -5.2198 22 1 -6.2388 -1.8398 -4.0913 23 1 -4.9051 -1.6906 -6.1111 24 6 3.2853 -2.9235 -1.4266 25 6 4.5264 -2.8641 -1.8418 26 6 2.7156 -4.2308 -0.9393 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 2.6902 1.3628 -0.8901 30 1 1.3552 2.1336 -0.0005 31 1 2.6901 1.3629 0.8900 32 1 1.4385 -2.0852 0.4353 33 1 2.9742 -1.1985 0.5901 34 1 3.3917 -1.3360 -3.5328 35 1 3.4958 -1.0002 -5.9643 36 1 1.4631 -1.2029 -7.3365 37 1 -0.6881 -1.7532 -6.2888 38 1 -4.5162 -2.7788 -2.1220 39 1 4.9348 -1.9271 -2.1907 40 1 5.1411 -3.7521 -1.8353 41 1 2.2693 -4.7673 -1.7766 42 1 1.9533 -4.0363 -0.1848 43 1 3.5119 -4.8344 -0.5040 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233529903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:11 Heat of formation + Delta-G solvation = -21.990556 kcal Electronic energy + Delta-G solvation = -24931.140672 eV Core-core repulsion = 21521.542379 eV Total energy + Delta-G solvation = -3409.598294 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.83035 -37.69120 -35.95190 -35.40565 -34.66636 -32.55041 -30.48619 -29.75617 -28.48753 -27.24984 -26.82286 -26.58874 -23.73045 -22.70370 -21.36224 -19.66759 -18.53717 -17.98826 -17.46261 -16.43280 -15.50165 -15.39262 -15.09528 -14.50792 -14.42471 -14.09417 -13.71994 -13.36793 -13.28872 -13.14893 -13.06025 -12.92649 -12.69535 -12.25241 -11.97787 -11.65450 -11.52037 -11.49227 -11.37128 -11.23027 -11.11042 -10.98058 -10.83473 -10.74256 -10.35732 -10.12898 -10.08645 -10.01603 -9.08762 -8.88835 -8.51329 -8.12297 -7.35156 -7.28194 -6.19049 -4.77074 1.88178 2.15492 2.21495 2.75159 3.08785 3.17018 3.20588 3.92325 4.06934 4.15568 4.69189 4.80808 4.97882 5.23902 5.29314 5.35027 5.45689 5.48613 5.57196 5.69424 5.73321 5.79412 5.82815 5.88662 5.92337 5.95134 5.97561 6.00765 6.12787 6.20913 6.26728 6.33502 6.41723 6.54522 6.64230 6.77468 6.87945 7.01817 7.02950 7.18984 7.23396 7.35301 7.37063 7.56607 8.13479 8.24168 8.90276 8.96000 10.42901 10.67152 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.013231 B = 0.005570 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.740235 B = 5025.818930 C = 5887.780254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.161 4.161 3 C -0.111 4.111 4 C -0.067 4.067 5 C 0.117 3.883 6 H 0.070 0.930 7 O -0.249 6.249 8 C 0.154 3.846 9 C -0.229 4.229 10 C -0.094 4.094 11 C -0.178 4.178 12 C -0.061 4.061 13 C -0.137 4.137 14 C 0.394 3.606 15 O -0.514 6.514 16 C -0.524 4.524 17 H 0.070 0.930 18 C 0.083 3.917 19 N -0.738 5.738 20 Si 0.901 3.099 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.132 4.132 25 C -0.196 4.196 26 C -0.114 4.114 27 H 0.088 0.912 28 H 0.113 0.887 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.133 0.867 38 H 0.271 0.729 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.078 3.023 1.395 12.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C -0.168 4.168 4 C -0.105 4.105 5 C 0.060 3.940 6 H 0.088 0.912 7 O -0.160 6.160 8 C 0.107 3.893 9 C -0.248 4.248 10 C -0.112 4.112 11 C -0.196 4.196 12 C -0.079 4.079 13 C -0.139 4.139 14 C 0.287 3.713 15 O -0.401 6.401 16 C -0.555 4.555 17 H 0.088 0.912 18 C -0.139 4.139 19 N -0.367 5.367 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.186 1.186 24 C -0.133 4.133 25 C -0.233 4.233 26 C -0.170 4.170 27 H 0.107 0.893 28 H 0.131 0.869 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.151 0.849 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.824 2.853 2.303 12.379 hybrid contribution -0.397 0.140 -0.988 1.074 sum 11.426 2.993 1.315 11.885 Atomic orbital electron populations 1.23909 0.95081 1.02568 0.96582 1.21377 0.95487 0.94491 1.04697 1.20789 0.99935 0.94981 1.01087 1.20584 1.00349 0.95752 0.93779 1.21399 0.85870 0.93655 0.93106 0.91218 1.86534 1.32658 1.81687 1.15169 1.19408 0.93023 0.93587 0.83253 1.21148 0.96966 1.10619 0.96054 1.20790 0.97752 0.99531 0.93123 1.20920 0.93243 1.06238 0.99219 1.21392 0.97414 0.95285 0.93800 1.21546 0.96342 1.02885 0.93162 1.17944 0.84691 0.79710 0.88948 1.90523 1.86187 1.47643 1.15721 1.20883 0.92461 1.47302 0.94895 0.91173 1.25914 1.00487 0.92795 0.94740 1.69968 1.25843 1.30851 1.10069 0.86458 0.81180 0.79080 0.80802 1.19635 1.20234 1.18574 1.22310 0.95411 0.96983 0.98558 1.23640 0.96193 1.01627 1.01813 1.20757 1.00706 0.93806 1.01770 0.89324 0.86870 0.92476 0.92324 0.92370 0.89931 0.90362 0.86356 0.87142 0.86945 0.84931 0.91798 0.88703 0.88174 0.91016 0.91211 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 13.77 29.01 0.40 -2.25 16 2 C -0.16 -2.57 5.10 -101.07 -0.52 -3.09 16 3 C -0.11 -1.45 10.12 36.01 0.36 -1.08 16 4 C -0.07 -1.03 4.90 -27.89 -0.14 -1.17 16 5 C 0.12 1.95 1.87 -27.89 -0.05 1.89 16 6 H 0.07 1.10 5.88 -51.93 -0.31 0.80 16 7 O -0.25 -5.43 7.37 -40.45 -0.30 -5.73 16 8 C 0.15 3.40 6.63 -38.61 -0.26 3.14 16 9 C -0.23 -4.19 8.74 -39.47 -0.34 -4.53 16 10 C -0.09 -1.57 10.04 -39.47 -0.40 -1.96 16 11 C -0.18 -3.11 10.02 -39.61 -0.40 -3.51 16 12 C -0.06 -1.26 9.43 -39.18 -0.37 -1.63 16 13 C -0.14 -3.34 5.90 -104.69 -0.62 -3.96 16 14 C 0.39 11.23 6.90 -34.42 -0.24 10.99 16 15 O -0.51 -15.97 13.74 -16.74 -0.23 -16.20 16 16 C -0.52 -14.52 8.83 -37.43 -0.33 -14.85 16 17 H 0.07 1.78 6.07 -52.49 -0.32 1.46 16 18 C 0.08 2.25 5.49 -17.32 -0.10 2.15 16 19 N -0.74 -21.19 11.76 55.57 0.65 -20.53 16 20 Si 0.90 19.50 29.57 -169.99 -5.03 14.47 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 23 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 24 C -0.13 -1.95 4.64 -101.06 -0.47 -2.42 16 25 C -0.20 -2.44 13.04 29.01 0.38 -2.06 16 26 C -0.11 -1.67 9.84 36.01 0.35 -1.32 16 27 H 0.09 1.51 7.83 -52.49 -0.41 1.10 16 28 H 0.11 2.43 7.99 -52.49 -0.42 2.01 16 29 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.06 0.73 7.78 -51.92 -0.40 0.33 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.35 7.04 -51.93 -0.37 0.99 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.12 1.88 4.40 -52.49 -0.23 1.65 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 37 H 0.13 2.65 6.22 -52.49 -0.33 2.32 16 38 H 0.27 7.02 8.29 -40.82 -0.34 6.69 16 39 H 0.09 1.07 7.26 -52.49 -0.38 0.69 16 40 H 0.10 1.09 8.04 -52.48 -0.42 0.67 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.07 1.07 7.02 -51.93 -0.36 0.71 16 43 H 0.06 0.70 8.06 -51.93 -0.42 0.28 16 LS Contribution 359.59 15.07 5.42 5.42 Total: -1.00 -32.15 359.59 -8.24 -40.39 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -6.04 Total: 7.85 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -2.72 Total: -25.66 kcal Atomic # 7 Polarization: -21.19 SS G_CDS: 0.65 Total: -20.53 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.53 Total: -21.93 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.15 -8.24 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233529903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.396 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds