Wall clock time and date at job start Fri Apr 10 2020 20:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00140 * 2 1 4 4 C 1.50702 * 119.99994 * 179.97438 * 2 1 3 5 5 C 1.52993 * 109.47100 * 94.99895 * 4 2 1 6 6 H 1.08997 * 109.47429 * 55.00671 * 5 4 2 7 7 O 1.42896 * 109.47235 * 294.99828 * 5 4 2 8 8 C 1.35640 * 116.99785 * 153.66719 * 7 5 4 9 9 C 1.38672 * 120.16071 * 5.23114 * 8 7 5 10 10 C 1.38094 * 120.08909 * 179.74858 * 9 8 7 11 11 C 1.38688 * 120.41524 * 0.55407 * 10 9 8 12 12 C 1.37696 * 120.32423 * 359.70370 * 11 10 9 13 13 C 1.39852 * 119.90220 * 0.02562 * 12 11 10 14 14 C 1.47532 * 120.20811 * 180.02562 * 13 12 11 15 15 O 1.21808 * 120.00101 * 179.97438 * 14 13 12 16 16 C 1.41836 * 119.99836 * 359.97336 * 14 13 12 17 17 H 1.07998 * 120.00093 * 6.79295 * 16 14 13 18 18 C 1.40318 * 119.99785 * 186.79455 * 16 14 13 19 19 N 1.30547 * 120.00214 * 353.87626 * 18 16 14 20 20 Si 1.86805 * 119.99877 * 173.87341 * 18 16 14 21 21 H 1.48499 * 109.47063 * 94.98632 * 20 18 16 22 22 H 1.48498 * 109.47153 * 214.98525 * 20 18 16 23 23 H 1.48500 * 109.46984 * 334.98496 * 20 18 16 24 24 C 1.50703 * 109.46883 * 174.99740 * 5 4 2 25 25 C 1.31001 * 120.00297 * 245.00062 * 24 5 4 26 26 C 1.50704 * 119.99816 * 65.00227 * 24 5 4 27 27 H 1.08002 * 120.00049 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00137 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46891 * 240.00128 * 3 2 1 30 30 H 1.09008 * 109.46802 * 359.97438 * 3 2 1 31 31 H 1.08996 * 109.47315 * 119.99491 * 3 2 1 32 32 H 1.09001 * 109.46636 * 335.00027 * 4 2 1 33 33 H 1.09001 * 109.46456 * 215.00392 * 4 2 1 34 34 H 1.07998 * 119.95149 * 0.02562 * 9 8 7 35 35 H 1.07997 * 119.78827 * 180.25286 * 10 9 8 36 36 H 1.08003 * 119.83663 * 179.72339 * 11 10 9 37 37 H 1.07999 * 120.05497 * 180.02562 * 12 11 10 38 38 H 0.96996 * 119.99949 * 179.97438 * 19 18 16 39 39 H 1.07997 * 119.99956 * 0.02562 * 25 24 5 40 40 H 1.08006 * 119.99696 * 180.02562 * 25 24 5 41 41 H 1.09001 * 109.47236 * 89.99735 * 26 24 5 42 42 H 1.08999 * 109.47282 * 330.00157 * 26 24 5 43 43 H 1.08998 * 109.47176 * 210.00110 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6846 -1.4362 6 1 2.9771 -0.8657 -1.9002 7 8 1.2332 -1.9379 -2.1789 8 6 1.2905 -1.7475 -3.5207 9 6 2.4960 -1.4309 -4.1286 10 6 2.5536 -1.2426 -5.4954 11 6 1.4081 -1.3566 -6.2688 12 6 0.2011 -1.6651 -5.6823 13 6 0.1284 -1.8642 -4.2999 14 6 -1.1612 -2.1956 -3.6646 15 8 -1.2201 -2.3686 -2.4603 16 6 -2.3324 -2.3126 -4.4560 17 1 -2.2631 -2.2682 -5.5329 18 6 -3.5811 -2.4859 -3.8399 19 7 -3.6530 -2.6593 -2.5479 20 14 -5.1405 -2.4685 -4.8682 21 1 -5.5171 -3.8612 -5.2198 22 1 -6.2388 -1.8398 -4.0913 23 1 -4.9051 -1.6906 -6.1111 24 6 3.2853 -2.9235 -1.4266 25 6 4.5264 -2.8641 -1.8418 26 6 2.7156 -4.2308 -0.9393 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 2.6902 1.3628 -0.8901 30 1 1.3552 2.1336 -0.0005 31 1 2.6901 1.3629 0.8900 32 1 1.4385 -2.0852 0.4353 33 1 2.9742 -1.1985 0.5901 34 1 3.3917 -1.3360 -3.5328 35 1 3.4958 -1.0002 -5.9643 36 1 1.4631 -1.2029 -7.3365 37 1 -0.6881 -1.7532 -6.2888 38 1 -4.5162 -2.7788 -2.1220 39 1 4.9348 -1.9271 -2.1907 40 1 5.1411 -3.7521 -1.8353 41 1 2.2693 -4.7673 -1.7766 42 1 1.9533 -4.0363 -0.1848 43 1 3.5119 -4.8344 -0.5040 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233529903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:10 Heat of formation + Delta-G solvation = -38.880975 kcal Electronic energy + Delta-G solvation = -24931.873096 eV Core-core repulsion = 21521.542379 eV Total energy + Delta-G solvation = -3410.330717 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.29202 -39.21783 -37.89185 -36.79034 -35.86511 -34.65723 -32.12293 -31.11075 -29.89834 -28.63868 -28.36796 -28.02030 -25.04836 -24.41102 -22.80091 -21.47393 -19.78742 -19.29794 -18.95169 -18.34437 -17.32199 -16.64103 -16.63286 -16.08381 -15.72778 -15.52187 -15.10983 -14.94431 -14.84719 -14.57200 -14.34565 -14.23509 -14.10556 -13.72343 -13.66380 -13.24379 -12.99830 -12.83607 -12.68966 -12.65987 -12.60609 -12.45233 -12.40114 -12.12600 -12.07120 -11.94097 -11.54960 -11.33291 -10.93447 -10.20818 -9.84422 -9.67498 -9.38769 -8.90201 -8.23864 -6.95063 0.31241 0.66642 1.12903 1.36005 1.37109 1.37427 1.52986 2.22312 2.33733 2.57070 2.95610 3.60165 3.75881 3.86078 4.00744 4.01911 4.05414 4.13544 4.25862 4.33897 4.39481 4.53278 4.59385 4.60085 4.70260 4.72880 4.75071 4.83539 4.91069 4.95700 5.00106 5.06460 5.08884 5.11627 5.21826 5.26274 5.47196 5.56953 5.58612 5.74143 5.76507 5.81206 6.00117 6.03329 6.12461 6.74311 6.79318 6.97053 8.38764 8.60743 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.013231 B = 0.005570 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.740235 B = 5025.818930 C = 5887.780254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.135 4.135 3 C -0.109 4.109 4 C -0.070 4.070 5 C 0.113 3.887 6 H 0.085 0.915 7 O -0.287 6.287 8 C 0.138 3.862 9 C -0.226 4.226 10 C -0.073 4.073 11 C -0.172 4.172 12 C -0.067 4.067 13 C -0.195 4.195 14 C 0.371 3.629 15 O -0.561 6.561 16 C -0.555 4.555 17 H 0.086 0.914 18 C 0.027 3.973 19 N -0.791 5.791 20 Si 0.988 3.012 21 H -0.260 1.260 22 H -0.270 1.270 23 H -0.247 1.247 24 C -0.165 4.165 25 C -0.160 4.160 26 C -0.110 4.110 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.117 0.883 34 H 0.147 0.853 35 H 0.162 0.838 36 H 0.153 0.847 37 H 0.129 0.871 38 H 0.277 0.723 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.042 0.958 42 H 0.046 0.954 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.739 4.347 -1.010 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.135 4.135 3 C -0.165 4.165 4 C -0.107 4.107 5 C 0.057 3.943 6 H 0.103 0.897 7 O -0.199 6.199 8 C 0.092 3.908 9 C -0.245 4.245 10 C -0.091 4.091 11 C -0.190 4.190 12 C -0.085 4.085 13 C -0.197 4.197 14 C 0.267 3.733 15 O -0.452 6.452 16 C -0.587 4.587 17 H 0.104 0.896 18 C -0.191 4.191 19 N -0.421 5.421 20 Si 0.807 3.193 21 H -0.185 1.185 22 H -0.195 1.195 23 H -0.170 1.170 24 C -0.165 4.165 25 C -0.197 4.197 26 C -0.166 4.166 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.135 0.865 34 H 0.164 0.836 35 H 0.179 0.821 36 H 0.171 0.829 37 H 0.147 0.853 38 H 0.087 0.913 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 15.504 4.179 -0.119 16.058 hybrid contribution -1.318 -0.285 -0.237 1.369 sum 14.186 3.894 -0.356 14.716 Atomic orbital electron populations 1.23627 0.96395 1.00568 1.01752 1.21816 0.94738 0.96708 1.00231 1.20852 1.00060 0.92536 1.03095 1.20700 1.01344 0.94469 0.94184 1.21640 0.84862 0.95219 0.92547 0.89736 1.86512 1.35797 1.81904 1.15683 1.19636 0.93800 0.93881 0.83522 1.21453 0.96169 1.09625 0.97227 1.21402 0.99390 0.96027 0.92278 1.21318 0.91880 1.04504 1.01284 1.21463 0.99183 0.95517 0.92352 1.21255 0.95565 1.07741 0.95137 1.18653 0.87176 0.78707 0.88728 1.90477 1.87578 1.49625 1.17473 1.21372 0.93366 1.48091 0.95836 0.89566 1.27141 1.04606 0.91388 0.95994 1.70133 1.27242 1.32092 1.12584 0.85148 0.75491 0.79692 0.78952 1.18483 1.19458 1.16981 1.22119 0.96355 0.95841 1.02206 1.23963 0.94731 1.03300 0.97673 1.20693 1.01043 0.94691 1.00217 0.88758 0.91790 0.91153 0.92130 0.89245 0.92586 0.86479 0.83560 0.82069 0.82910 0.85315 0.91273 0.86533 0.86086 0.93925 0.93457 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.60 13.77 67.78 0.93 -6.67 16 2 C -0.13 -4.45 5.10 -16.49 -0.08 -4.53 16 3 C -0.11 -2.60 10.12 71.24 0.72 -1.88 16 4 C -0.07 -2.18 4.90 29.85 0.15 -2.04 16 5 C 0.11 3.74 1.87 29.85 0.06 3.80 16 6 H 0.08 2.46 5.88 -2.39 -0.01 2.44 16 7 O -0.29 -13.23 7.37 -68.67 -0.51 -13.74 16 8 C 0.14 6.24 6.63 22.90 0.15 6.39 16 9 C -0.23 -7.64 8.74 22.34 0.20 -7.44 16 10 C -0.07 -2.09 10.04 22.34 0.22 -1.87 16 11 C -0.17 -5.43 10.02 22.25 0.22 -5.20 16 12 C -0.07 -2.79 9.43 22.53 0.21 -2.57 16 13 C -0.20 -9.95 5.90 -19.91 -0.12 -10.07 16 14 C 0.37 22.89 6.90 25.61 0.18 23.06 16 15 O -0.56 -38.46 13.74 16.18 0.22 -38.24 16 16 C -0.56 -32.67 8.83 23.67 0.21 -32.46 16 17 H 0.09 4.57 6.07 -2.91 -0.02 4.55 16 18 C 0.03 1.51 5.49 85.39 0.47 1.98 16 19 N -0.79 -48.81 11.76 21.88 0.26 -48.56 16 20 Si 0.99 41.40 29.57 68.60 2.03 43.43 16 21 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 24 C -0.16 -4.64 4.64 -16.49 -0.08 -4.72 16 25 C -0.16 -3.29 13.04 67.78 0.88 -2.41 16 26 C -0.11 -3.33 9.84 71.24 0.70 -2.63 16 27 H 0.09 3.58 7.83 -2.91 -0.02 3.56 16 28 H 0.06 3.21 7.99 -2.91 -0.02 3.19 16 29 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.06 1.43 7.78 -2.38 -0.02 1.42 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 2.03 7.04 -2.39 -0.02 2.01 16 33 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.15 3.99 4.40 -2.91 -0.01 3.98 16 35 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 37 H 0.13 5.24 6.22 -2.91 -0.02 5.23 16 38 H 0.28 15.40 8.29 -92.71 -0.77 14.63 16 39 H 0.12 1.92 7.26 -2.91 -0.02 1.90 16 40 H 0.12 2.03 8.04 -2.91 -0.02 2.01 16 41 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.05 1.59 7.02 -2.39 -0.02 1.58 16 43 H 0.09 2.04 8.06 -2.39 -0.02 2.02 16 Total: -1.00 -80.73 359.59 8.03 -72.70 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: 1.00 Total: 33.66 kcal Atomic # 6 Polarization: -54.28 SS G_CDS: 5.02 Total: -49.26 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.26 Total: -48.56 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -0.28 Total: -51.98 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -80.73 8.03 -72.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233529903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.822 kcal (2) G-P(sol) polarization free energy of solvation -80.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds