Wall clock time and date at job start Fri Apr 10 2020 20:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00228 * 2 1 4 4 H 1.48495 * 109.47467 * 239.99896 * 3 2 1 5 5 H 1.48501 * 109.47101 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46811 * 119.99819 * 3 2 1 7 7 C 1.37886 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99538 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00132 * 359.97438 * 7 2 1 10 10 N 1.46890 * 109.47170 * 180.02562 * 9 7 2 11 11 C 1.46953 * 111.00089 * 169.99901 * 10 9 7 12 12 C 1.53050 * 109.36684 * 183.18765 * 11 10 9 13 13 N 1.46957 * 109.36701 * 301.60351 * 12 11 10 14 14 C 1.46899 * 111.00131 * 183.18587 * 13 12 11 15 15 C 1.50708 * 109.47085 * 169.99751 * 14 13 12 16 16 C 1.37858 * 120.02048 * 260.00161 * 15 14 13 17 17 C 1.38714 * 120.69305 * 179.97438 * 16 15 14 18 18 C 1.37765 * 120.27359 * 0.02562 * 17 16 15 19 19 C 1.39381 * 119.59995 * 0.02562 * 18 17 16 20 20 C 1.46791 * 134.34521 * 180.02562 * 19 18 17 21 21 C 1.33985 * 106.18039 * 179.97438 * 20 19 18 22 22 O 1.34442 * 110.16882 * 359.97438 * 21 20 19 23 23 C 1.34836 * 110.89120 * 0.02562 * 22 21 20 24 24 C 1.46953 * 110.88174 * 59.31512 * 13 12 11 25 25 C 1.46957 * 111.00249 * 293.80271 * 10 9 7 26 26 H 0.96999 * 119.99661 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.46586 * 60.00051 * 9 7 2 28 28 H 1.09006 * 109.46927 * 300.00270 * 9 7 2 29 29 H 1.09000 * 109.48844 * 63.22737 * 11 10 9 30 30 H 1.09000 * 109.49284 * 303.15441 * 11 10 9 31 31 H 1.08996 * 109.49498 * 181.63198 * 12 11 10 32 32 H 1.09004 * 109.49016 * 61.56603 * 12 11 10 33 33 H 1.08999 * 109.47016 * 50.00307 * 14 13 12 34 34 H 1.08997 * 109.47478 * 289.99421 * 14 13 12 35 35 H 1.08002 * 119.65731 * 359.97438 * 16 15 14 36 36 H 1.08000 * 119.86750 * 180.02562 * 17 16 15 37 37 H 1.08000 * 120.19943 * 179.72165 * 18 17 16 38 38 H 1.07996 * 126.90316 * 359.96991 * 20 19 18 39 39 H 1.08008 * 124.91427 * 179.97438 * 21 20 19 40 40 H 1.09005 * 109.48562 * 60.64865 * 24 13 12 41 41 H 1.09001 * 109.49102 * 180.71299 * 24 13 12 42 42 H 1.09004 * 109.48322 * 296.77994 * 25 10 9 43 43 H 1.09002 * 109.49084 * 56.84402 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4993 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 1.5207 -4.8940 0.2377 12 6 2.5561 -6.0188 0.3093 13 7 3.3193 -6.0594 -0.9459 14 6 4.2738 -7.1760 -0.9459 15 6 4.8579 -7.3376 -2.3257 16 6 4.3719 -8.3126 -3.1705 17 6 4.8988 -8.4733 -4.4436 18 6 5.9190 -7.6574 -4.8811 19 6 6.4200 -6.6684 -4.0363 20 6 7.4682 -5.6482 -4.1594 21 6 7.4832 -4.9858 -2.9949 22 8 6.5537 -5.4885 -2.1637 23 6 5.8868 -6.5051 -2.7466 24 6 4.0040 -4.7811 -1.1841 25 6 2.9686 -3.6563 -1.2558 26 1 -0.4849 0.8401 -0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 0.8252 -5.0915 -0.5780 30 1 0.9731 -4.8434 1.1788 31 1 2.0483 -6.9719 0.4571 32 1 3.2353 -5.8354 1.1420 33 1 3.7598 -8.0934 -0.6592 34 1 5.0737 -6.9702 -0.2346 35 1 3.5725 -8.9581 -2.8377 36 1 4.5077 -9.2412 -5.0946 37 1 6.3314 -7.7865 -5.8709 38 1 8.1003 -5.4679 -5.0164 39 1 8.1460 -4.1665 -2.7581 40 1 4.6996 -4.5837 -0.3684 41 1 4.5516 -4.8318 -2.1252 42 1 2.2894 -3.8397 -2.0884 43 1 3.4766 -2.7033 -1.4035 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236738185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:17 Heat of formation + Delta-G solvation = 47.371160 kcal Electronic energy + Delta-G solvation = -24403.905760 eV Core-core repulsion = 21029.607967 eV Total energy + Delta-G solvation = -3374.297793 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.55278 -38.90514 -37.84629 -35.26737 -33.05989 -32.29076 -30.92343 -30.32845 -29.46360 -28.08249 -25.91800 -23.92808 -23.14704 -22.68517 -22.18873 -21.37138 -20.44074 -19.08130 -17.47472 -17.14554 -16.51243 -16.27690 -15.70804 -15.43228 -14.77621 -14.55010 -14.48087 -14.15291 -13.83150 -13.55306 -13.37111 -13.26499 -12.79074 -12.71111 -12.23031 -12.18154 -11.96603 -11.76661 -11.56353 -11.16408 -11.02329 -10.82535 -10.66679 -10.58427 -10.34537 -10.22079 -10.11974 -9.66471 -9.15183 -8.67440 -8.40236 -8.27126 -8.03229 -7.17026 -5.99337 -4.00530 0.81861 1.28560 2.28207 2.75609 3.35227 3.38961 3.41989 3.55782 4.27721 4.37037 4.45094 4.52660 4.73037 4.89883 5.02170 5.09722 5.23286 5.28809 5.35877 5.36188 5.39780 5.53112 5.58562 5.65201 5.74169 5.83300 5.91221 6.00922 6.11265 6.18539 6.23022 6.29164 6.31195 6.38099 6.48891 6.56320 6.66765 6.76270 7.09106 7.24066 7.27659 7.39996 7.43851 7.83807 8.13608 8.26111 8.60280 9.06747 9.63336 11.11612 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.017756 B = 0.003854 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.519523 B = 7264.201952 C = 8267.458256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.057 3.943 12 C 0.061 3.939 13 N -0.534 5.534 14 C 0.094 3.906 15 C -0.058 4.058 16 C -0.081 4.081 17 C -0.135 4.135 18 C -0.078 4.078 19 C -0.132 4.132 20 C -0.217 4.217 21 C 0.011 3.989 22 O -0.189 6.189 23 C 0.061 3.939 24 C 0.059 3.941 25 C 0.070 3.930 26 H 0.261 0.739 27 H -0.009 1.009 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.156 0.844 39 H 0.206 0.794 40 H 0.039 0.961 41 H 0.072 0.928 42 H 0.026 0.974 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.966 -17.474 -7.404 22.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.072 4.072 12 C -0.067 4.067 13 N -0.259 5.259 14 C -0.034 4.034 15 C -0.059 4.059 16 C -0.100 4.100 17 C -0.153 4.153 18 C -0.096 4.096 19 C -0.133 4.133 20 C -0.236 4.236 21 C -0.054 4.054 22 O -0.090 6.090 23 C 0.014 3.986 24 C -0.069 4.069 25 C -0.059 4.059 26 H 0.071 0.929 27 H 0.009 0.991 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.173 0.827 39 H 0.223 0.777 40 H 0.057 0.943 41 H 0.090 0.910 42 H 0.045 0.955 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.729 -17.245 -7.105 22.581 hybrid contribution 0.501 1.063 -0.270 1.206 sum 13.230 -16.182 -7.375 22.165 Atomic orbital electron populations 1.69952 1.06052 1.26820 1.51046 1.24985 0.94851 0.99247 0.95489 0.86570 0.79452 0.82826 0.78612 1.20300 1.21352 1.20193 1.21125 0.93399 0.90003 1.50022 0.92029 1.19693 0.90059 0.87321 0.96068 1.62279 1.28071 1.02736 1.33266 1.22055 0.94716 0.90005 1.00436 1.22171 0.96077 0.98615 0.89800 1.62254 1.25392 1.03248 1.34980 1.20974 0.94592 0.95774 0.92050 1.18703 0.94186 0.95295 0.97669 1.20801 0.98908 0.97179 0.93110 1.20987 0.97582 1.00406 0.96333 1.20481 0.96467 0.93916 0.98758 1.19936 0.99055 0.99344 0.94977 1.22470 1.02273 0.98934 0.99926 1.24012 0.92636 0.99371 0.89382 1.84157 1.42085 1.41162 1.41611 1.19376 0.96330 0.90791 0.92142 1.22350 0.95821 0.88271 1.00476 1.21973 0.95383 0.97410 0.91150 0.92904 0.99101 0.95242 0.95154 0.90984 0.91133 0.94283 0.89781 0.93919 0.84819 0.85401 0.85765 0.82670 0.77712 0.94285 0.91002 0.95539 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.57 8.47 -34.44 -0.29 -14.86 16 8 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 9 C 0.19 5.23 4.72 -4.98 -0.02 5.20 16 10 N -0.54 -12.24 4.70 -235.92 -1.11 -13.35 16 11 C 0.06 1.09 5.61 -3.77 -0.02 1.07 16 12 C 0.06 0.97 5.61 -3.77 -0.02 0.94 16 13 N -0.53 -8.54 4.70 -235.91 -1.11 -9.65 16 14 C 0.09 1.23 5.18 -4.97 -0.03 1.20 16 15 C -0.06 -0.75 5.17 -104.52 -0.54 -1.29 16 16 C -0.08 -0.89 9.64 -39.54 -0.38 -1.27 16 17 C -0.13 -1.34 10.03 -39.58 -0.40 -1.74 16 18 C -0.08 -0.83 10.10 -39.33 -0.40 -1.23 16 19 C -0.13 -1.65 6.40 -105.16 -0.67 -2.32 16 20 C -0.22 -2.28 11.14 -37.62 -0.42 -2.70 16 21 C 0.01 0.12 11.96 29.24 0.35 0.47 16 22 O -0.19 -2.60 8.58 3.85 0.03 -2.57 16 23 C 0.06 0.85 5.51 -38.49 -0.21 0.63 16 24 C 0.06 1.04 4.58 -3.77 -0.02 1.03 16 25 C 0.07 1.48 5.43 -3.77 -0.02 1.46 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 28 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.33 8.07 -51.93 -0.42 0.91 16 31 H 0.07 0.92 8.07 -51.93 -0.42 0.51 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.91 7.88 -51.93 -0.41 0.50 16 34 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 35 H 0.13 1.18 8.02 -52.49 -0.42 0.76 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.21 1.36 8.06 -52.48 -0.42 0.94 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.26 4.71 -51.93 -0.24 1.02 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 1.90 6.79 -51.93 -0.35 1.55 16 LS Contribution 345.15 15.07 5.20 5.20 Total: -1.00 -32.65 345.15 -10.87 -43.53 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -6.42 Total: -1.74 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -3.19 Total: -11.91 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -1.48 Total: -49.43 kcal Atomic # 8 Polarization: -2.60 SS G_CDS: 0.03 Total: -2.57 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.65 -10.87 -43.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236738185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.896 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds