Wall clock time and date at job start Fri Apr 10 2020 20:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00228 * 2 1 4 4 H 1.48495 * 109.47467 * 239.99896 * 3 2 1 5 5 H 1.48501 * 109.47101 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46811 * 119.99819 * 3 2 1 7 7 C 1.37886 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99538 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00132 * 359.97438 * 7 2 1 10 10 N 1.46890 * 109.47170 * 180.02562 * 9 7 2 11 11 C 1.46953 * 111.00089 * 169.99901 * 10 9 7 12 12 C 1.53050 * 109.36684 * 183.18765 * 11 10 9 13 13 N 1.46957 * 109.36701 * 301.60351 * 12 11 10 14 14 C 1.46899 * 111.00131 * 183.18587 * 13 12 11 15 15 C 1.50708 * 109.47085 * 169.99751 * 14 13 12 16 16 C 1.37858 * 120.02048 * 260.00161 * 15 14 13 17 17 C 1.38714 * 120.69305 * 179.97438 * 16 15 14 18 18 C 1.37765 * 120.27359 * 0.02562 * 17 16 15 19 19 C 1.39381 * 119.59995 * 0.02562 * 18 17 16 20 20 C 1.46791 * 134.34521 * 180.02562 * 19 18 17 21 21 C 1.33985 * 106.18039 * 179.97438 * 20 19 18 22 22 O 1.34442 * 110.16882 * 359.97438 * 21 20 19 23 23 C 1.34836 * 110.89120 * 0.02562 * 22 21 20 24 24 C 1.46953 * 110.88174 * 59.31512 * 13 12 11 25 25 C 1.46957 * 111.00249 * 293.80271 * 10 9 7 26 26 H 0.96999 * 119.99661 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.46586 * 60.00051 * 9 7 2 28 28 H 1.09006 * 109.46927 * 300.00270 * 9 7 2 29 29 H 1.09000 * 109.48844 * 63.22737 * 11 10 9 30 30 H 1.09000 * 109.49284 * 303.15441 * 11 10 9 31 31 H 1.08996 * 109.49498 * 181.63198 * 12 11 10 32 32 H 1.09004 * 109.49016 * 61.56603 * 12 11 10 33 33 H 1.08999 * 109.47016 * 50.00307 * 14 13 12 34 34 H 1.08997 * 109.47478 * 289.99421 * 14 13 12 35 35 H 1.08002 * 119.65731 * 359.97438 * 16 15 14 36 36 H 1.08000 * 119.86750 * 180.02562 * 17 16 15 37 37 H 1.08000 * 120.19943 * 179.72165 * 18 17 16 38 38 H 1.07996 * 126.90316 * 359.96991 * 20 19 18 39 39 H 1.08008 * 124.91427 * 179.97438 * 21 20 19 40 40 H 1.09005 * 109.48562 * 60.64865 * 24 13 12 41 41 H 1.09001 * 109.49102 * 180.71299 * 24 13 12 42 42 H 1.09004 * 109.48322 * 296.77994 * 25 10 9 43 43 H 1.09002 * 109.49084 * 56.84402 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4993 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 1.5207 -4.8940 0.2377 12 6 2.5561 -6.0188 0.3093 13 7 3.3193 -6.0594 -0.9459 14 6 4.2738 -7.1760 -0.9459 15 6 4.8579 -7.3376 -2.3257 16 6 4.3719 -8.3126 -3.1705 17 6 4.8988 -8.4733 -4.4436 18 6 5.9190 -7.6574 -4.8811 19 6 6.4200 -6.6684 -4.0363 20 6 7.4682 -5.6482 -4.1594 21 6 7.4832 -4.9858 -2.9949 22 8 6.5537 -5.4885 -2.1637 23 6 5.8868 -6.5051 -2.7466 24 6 4.0040 -4.7811 -1.1841 25 6 2.9686 -3.6563 -1.2558 26 1 -0.4849 0.8401 -0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 0.8252 -5.0915 -0.5780 30 1 0.9731 -4.8434 1.1788 31 1 2.0483 -6.9719 0.4571 32 1 3.2353 -5.8354 1.1420 33 1 3.7598 -8.0934 -0.6592 34 1 5.0737 -6.9702 -0.2346 35 1 3.5725 -8.9581 -2.8377 36 1 4.5077 -9.2412 -5.0946 37 1 6.3314 -7.7865 -5.8709 38 1 8.1003 -5.4679 -5.0164 39 1 8.1460 -4.1665 -2.7581 40 1 4.6996 -4.5837 -0.3684 41 1 4.5516 -4.8318 -2.1252 42 1 2.2894 -3.8397 -2.0884 43 1 3.4766 -2.7033 -1.4035 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236738185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:16 Heat of formation + Delta-G solvation = 25.826771 kcal Electronic energy + Delta-G solvation = -24404.839994 eV Core-core repulsion = 21029.607967 eV Total energy + Delta-G solvation = -3375.232028 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.40531 -40.27679 -38.84282 -36.78424 -34.75271 -33.66921 -32.02453 -31.76639 -30.33231 -29.73302 -27.51311 -25.39901 -24.59545 -23.64613 -23.24094 -23.03198 -21.40425 -20.61900 -18.50972 -18.32329 -17.99801 -17.60425 -16.87567 -16.55314 -16.35641 -15.90581 -15.85871 -15.60764 -15.28097 -14.98057 -14.76488 -14.38497 -14.08065 -13.69536 -13.53407 -13.43356 -13.21397 -13.13090 -12.91530 -12.69935 -12.58914 -12.41203 -12.29497 -12.16560 -12.03230 -11.79291 -11.43880 -11.22775 -10.98956 -10.62995 -9.55918 -9.35886 -9.08902 -9.01790 -8.22311 -6.33077 -0.00640 0.43770 1.39055 1.42864 1.47736 1.50862 1.95765 2.38846 2.65862 3.09211 3.11558 3.26836 3.56730 3.71257 3.85863 3.96246 4.10035 4.17712 4.28290 4.32006 4.37335 4.42878 4.44546 4.54454 4.62720 4.64210 4.69178 4.79270 4.84112 4.92918 4.94869 4.99665 5.01841 5.17330 5.24826 5.32592 5.45643 5.53846 5.55135 5.61205 5.79883 5.95876 6.02675 6.04447 6.25882 6.30677 6.59834 6.81743 7.36516 8.88901 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.017756 B = 0.003854 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.519523 B = 7264.201952 C = 8267.458256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.209 3.791 10 N -0.544 5.544 11 C 0.053 3.947 12 C 0.070 3.930 13 N -0.540 5.540 14 C 0.099 3.901 15 C -0.083 4.083 16 C -0.082 4.082 17 C -0.135 4.135 18 C -0.083 4.083 19 C -0.155 4.155 20 C -0.220 4.220 21 C -0.002 4.002 22 O -0.214 6.214 23 C 0.031 3.969 24 C 0.079 3.921 25 C 0.074 3.926 26 H 0.265 0.735 27 H -0.041 1.041 28 H 0.007 0.993 29 H 0.022 0.978 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.037 0.963 33 H 0.112 0.888 34 H 0.036 0.964 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.148 0.852 38 H 0.181 0.819 39 H 0.237 0.763 40 H 0.029 0.971 41 H 0.076 0.924 42 H 0.010 0.990 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.326 -18.690 -8.194 24.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.565 4.565 8 H 0.078 0.922 9 C 0.083 3.917 10 N -0.269 5.269 11 C -0.075 4.075 12 C -0.058 4.058 13 N -0.265 5.265 14 C -0.028 4.028 15 C -0.084 4.084 16 C -0.100 4.100 17 C -0.153 4.153 18 C -0.101 4.101 19 C -0.156 4.156 20 C -0.239 4.239 21 C -0.066 4.066 22 O -0.116 6.116 23 C -0.016 4.016 24 C -0.049 4.049 25 C -0.054 4.054 26 H 0.074 0.926 27 H -0.024 1.024 28 H 0.025 0.975 29 H 0.040 0.960 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.056 0.944 33 H 0.131 0.869 34 H 0.054 0.946 35 H 0.174 0.826 36 H 0.177 0.823 37 H 0.166 0.834 38 H 0.199 0.801 39 H 0.253 0.747 40 H 0.048 0.952 41 H 0.094 0.906 42 H 0.029 0.971 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.105 -18.494 -7.897 24.563 hybrid contribution 0.060 1.354 -0.084 1.358 sum 14.165 -17.140 -7.982 23.625 Atomic orbital electron populations 1.70082 1.07758 1.28056 1.51531 1.25930 0.95770 1.03221 0.94608 0.85421 0.78196 0.77779 0.79143 1.19258 1.20552 1.19220 1.21404 0.93472 0.91130 1.50495 0.92179 1.19353 0.90048 0.88956 0.93362 1.62221 1.27357 1.03359 1.33963 1.22191 0.95722 0.89385 1.00226 1.22138 0.95258 0.98698 0.89685 1.62237 1.26200 1.03040 1.35059 1.21016 0.93955 0.95344 0.92461 1.18883 0.94922 0.96488 0.98064 1.21164 0.98998 0.96606 0.93235 1.21392 0.96933 1.00624 0.96329 1.20886 0.96428 0.93245 0.99564 1.20371 0.99822 1.00403 0.94998 1.22844 1.02079 0.98253 1.00728 1.24727 0.92450 1.00080 0.89299 1.84113 1.42981 1.41650 1.42821 1.19760 0.97273 0.91450 0.93125 1.22034 0.94211 0.88219 1.00426 1.21903 0.95511 0.98092 0.89915 0.92580 1.02369 0.97501 0.95976 0.90562 0.87356 0.94431 0.86944 0.94619 0.82597 0.82345 0.83415 0.80141 0.74678 0.95228 0.90550 0.97129 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.65 13.29 21.45 0.28 -57.36 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.53 -31.16 8.47 25.60 0.22 -30.95 16 8 H 0.06 3.50 7.13 -2.91 -0.02 3.48 16 9 C 0.21 11.82 4.72 85.56 0.40 12.22 16 10 N -0.54 -25.56 4.70 -900.30 -4.23 -29.80 16 11 C 0.05 2.05 5.61 86.31 0.48 2.53 16 12 C 0.07 2.10 5.61 86.31 0.48 2.58 16 13 N -0.54 -16.74 4.70 -900.28 -4.23 -20.97 16 14 C 0.10 2.43 5.18 85.56 0.44 2.88 16 15 C -0.08 -2.05 5.17 -19.80 -0.10 -2.15 16 16 C -0.08 -1.60 9.64 22.29 0.21 -1.38 16 17 C -0.14 -2.32 10.03 22.27 0.22 -2.09 16 18 C -0.08 -1.60 10.10 22.43 0.23 -1.37 16 19 C -0.16 -3.70 6.40 -20.21 -0.13 -3.83 16 20 C -0.22 -4.37 11.14 23.54 0.26 -4.11 16 21 C 0.00 -0.03 11.96 66.85 0.80 0.77 16 22 O -0.21 -5.90 8.58 -9.14 -0.08 -5.98 16 23 C 0.03 0.85 5.51 22.98 0.13 0.97 16 24 C 0.08 2.86 4.58 86.31 0.39 3.26 16 25 C 0.07 3.28 5.43 86.31 0.47 3.75 16 26 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 27 H -0.04 -2.55 8.12 -2.39 -0.02 -2.57 16 28 H 0.01 0.41 8.03 -2.38 -0.02 0.39 16 29 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 2.83 8.07 -2.39 -0.02 2.81 16 31 H 0.11 2.49 8.07 -2.39 -0.02 2.47 16 32 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.11 2.09 7.88 -2.39 -0.02 2.07 16 34 H 0.04 0.93 8.12 -2.39 -0.02 0.91 16 35 H 0.16 2.23 8.02 -2.91 -0.02 2.21 16 36 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 39 H 0.24 2.83 8.06 -2.91 -0.02 2.81 16 40 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.08 2.73 4.71 -2.39 -0.01 2.71 16 42 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 43 H 0.06 3.00 6.79 -2.39 -0.02 2.99 16 Total: -1.00 -72.95 345.15 -0.26 -73.21 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.99 Total: 9.91 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 4.98 Total: -16.30 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -8.18 Total: -108.13 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.08 Total: -5.98 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -72.95 -0.26 -73.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236738185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.033 kcal (2) G-P(sol) polarization free energy of solvation -72.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds