Wall clock time and date at job start Fri Apr 10 2020 20:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99522 * 2 1 4 4 H 1.48503 * 109.47014 * 269.99667 * 3 2 1 5 5 H 1.48495 * 109.47295 * 29.99770 * 3 2 1 6 6 H 1.48500 * 109.47015 * 150.00061 * 3 2 1 7 7 C 1.37870 * 120.00493 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00485 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47591 * 180.02562 * 9 7 2 11 11 C 1.46958 * 111.00140 * 170.00103 * 10 9 7 12 12 C 1.53049 * 109.36273 * 183.18678 * 11 10 9 13 13 N 1.46955 * 109.36481 * 301.59821 * 12 11 10 14 14 C 1.46902 * 111.00099 * 183.19117 * 13 12 11 15 15 C 1.50701 * 109.47618 * 170.00180 * 14 13 12 16 16 C 1.37761 * 120.19413 * 260.02490 * 15 14 13 17 17 C 1.38720 * 120.27151 * 179.97438 * 16 15 14 18 18 C 1.37862 * 120.69223 * 0.02562 * 17 16 15 19 19 C 1.38888 * 119.95756 * 359.97438 * 18 17 16 20 20 O 1.34836 * 133.42279 * 180.02562 * 19 18 17 21 21 C 1.34444 * 110.89695 * 179.97438 * 20 19 18 22 22 C 1.33987 * 110.15937 * 0.23232 * 21 20 19 23 23 C 1.39380 * 120.19752 * 79.99315 * 15 14 13 24 24 C 1.46958 * 110.88066 * 59.32236 * 13 12 11 25 25 C 1.46964 * 110.99732 * 293.79918 * 10 9 7 26 26 H 0.97003 * 120.00771 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47300 * 59.99544 * 9 7 2 28 28 H 1.08996 * 109.47047 * 300.00241 * 9 7 2 29 29 H 1.09001 * 109.48809 * 63.21978 * 11 10 9 30 30 H 1.08993 * 109.48872 * 303.15648 * 11 10 9 31 31 H 1.09002 * 109.48758 * 181.63367 * 12 11 10 32 32 H 1.08992 * 109.48853 * 61.56724 * 12 11 10 33 33 H 1.09005 * 109.47023 * 49.99465 * 14 13 12 34 34 H 1.09007 * 109.46944 * 290.00326 * 14 13 12 35 35 H 1.07996 * 119.86940 * 359.94990 * 16 15 14 36 36 H 1.07993 * 119.65629 * 180.02562 * 17 16 15 37 37 H 1.07996 * 120.02343 * 179.97438 * 18 17 16 38 38 H 1.08002 * 124.91593 * 179.97438 * 21 20 19 39 39 H 1.08006 * 126.90372 * 179.76195 * 22 21 20 40 40 H 1.08996 * 109.49011 * 60.65023 * 24 13 12 41 41 H 1.09003 * 109.48800 * 180.70985 * 24 13 12 42 42 H 1.09004 * 109.48747 * 296.77862 * 25 10 9 43 43 H 1.08993 * 109.48728 * 56.84367 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5115 -1.1939 0.0011 10 7 4.0013 -2.5789 0.0010 11 6 5.4508 -2.6249 -0.2367 12 6 5.9072 -4.0840 -0.3084 13 7 5.5603 -4.7653 0.9466 14 6 6.0501 -6.1503 0.9466 15 6 5.8975 -6.7372 2.3262 16 6 6.9812 -6.8053 3.1739 17 6 6.8424 -7.3447 4.4444 18 6 5.6231 -7.8202 4.8776 19 6 4.5178 -7.7610 4.0387 20 8 3.2295 -8.1350 4.1752 21 6 2.5307 -7.8641 3.0591 22 6 3.3285 -7.3055 2.1389 23 6 4.6589 -7.2138 2.7522 24 6 4.1108 -4.7193 1.1843 25 6 3.6544 -3.2602 1.2561 26 1 -0.4851 0.8400 -0.0004 27 1 3.8746 -0.6798 0.8911 28 1 3.8752 -0.6803 -0.8888 29 1 5.9693 -2.1214 0.5793 30 1 5.6811 -2.1251 -1.1775 31 1 6.9866 -4.1206 -0.4557 32 1 5.4092 -4.5802 -1.1413 33 1 7.1017 -6.1637 0.6602 34 1 5.4722 -6.7400 0.2349 35 1 7.9429 -6.4375 2.8481 36 1 7.6985 -7.3928 5.1009 37 1 5.5273 -8.2384 5.8687 38 1 1.4795 -8.0710 2.9224 39 1 3.0485 -6.9852 1.1462 40 1 3.5923 -5.2228 0.3684 41 1 3.8805 -5.2191 2.1252 42 1 4.1525 -2.7639 2.0890 43 1 2.5751 -3.2236 1.4034 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236744211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:20 Heat of formation + Delta-G solvation = 53.767196 kcal Electronic energy + Delta-G solvation = -24393.768744 eV Core-core repulsion = 21019.748304 eV Total energy + Delta-G solvation = -3374.020440 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.52392 -39.13941 -37.85978 -35.30755 -33.01689 -32.36984 -31.12828 -30.39695 -29.59252 -28.41920 -26.11454 -23.87787 -23.35015 -22.77794 -22.23657 -21.16034 -20.27104 -19.12420 -17.40924 -17.22725 -16.79484 -16.28219 -15.80873 -15.65362 -14.90949 -14.50622 -14.41653 -14.34112 -13.86339 -13.66984 -13.59464 -13.29532 -12.76443 -12.66879 -12.36519 -12.20774 -12.13438 -11.86770 -11.70201 -11.39069 -11.13220 -10.91318 -10.78301 -10.55053 -10.43372 -10.13655 -9.87826 -9.81334 -9.25371 -8.65949 -8.56296 -8.30576 -8.07832 -7.34728 -6.04917 -4.02098 0.80183 1.28499 2.32162 2.74216 3.29003 3.36460 3.39252 3.52491 4.21994 4.39327 4.42786 4.55192 4.72234 4.79705 4.97393 5.04048 5.21785 5.26203 5.27632 5.30657 5.32681 5.50170 5.53967 5.60497 5.70942 5.79095 5.81456 5.89328 6.06111 6.09210 6.13335 6.19296 6.31805 6.33449 6.46020 6.53313 6.54868 6.66956 6.85424 6.98988 7.08787 7.18912 7.27475 7.60773 7.92705 8.06779 8.66740 9.02749 9.57168 11.08180 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.019442 B = 0.003746 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.852954 B = 7472.127595 C = 8229.467131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.529 5.529 11 C 0.054 3.946 12 C 0.061 3.939 13 N -0.533 5.533 14 C 0.093 3.907 15 C -0.023 4.023 16 C -0.122 4.122 17 C -0.094 4.094 18 C -0.112 4.112 19 C 0.050 3.950 20 O -0.198 6.198 21 C 0.005 3.995 22 C -0.206 4.206 23 C -0.121 4.121 24 C 0.050 3.950 25 C 0.067 3.933 26 H 0.263 0.737 27 H -0.011 1.011 28 H 0.023 0.977 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.208 0.792 39 H 0.160 0.840 40 H 0.038 0.962 41 H 0.084 0.916 42 H 0.028 0.972 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.364 -17.069 6.169 22.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.254 5.254 11 C -0.075 4.075 12 C -0.067 4.067 13 N -0.258 5.258 14 C -0.034 4.034 15 C -0.024 4.024 16 C -0.141 4.141 17 C -0.112 4.112 18 C -0.131 4.131 19 C 0.003 3.997 20 O -0.100 6.100 21 C -0.059 4.059 22 C -0.225 4.225 23 C -0.123 4.123 24 C -0.077 4.077 25 C -0.061 4.061 26 H 0.073 0.927 27 H 0.007 0.993 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.225 0.775 39 H 0.177 0.823 40 H 0.056 0.944 41 H 0.102 0.898 42 H 0.046 0.954 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.100 -17.045 6.386 22.426 hybrid contribution 0.257 1.132 -0.207 1.179 sum 13.357 -15.913 6.178 21.675 Atomic orbital electron populations 1.69887 1.06118 1.26828 1.51177 1.24887 0.94724 0.98836 0.94831 0.86868 0.80349 0.84030 0.78567 1.20159 1.21203 1.19266 1.21022 0.88734 0.94667 1.50252 0.90229 1.20154 0.97046 0.84162 0.95053 1.62127 1.10319 1.19021 1.33910 1.22108 0.90278 0.94712 1.00410 1.22153 0.99488 0.95039 0.89971 1.62214 1.15328 1.13410 1.34833 1.20986 1.00832 0.89194 0.92420 1.19210 0.91028 0.95998 0.96167 1.20885 0.98609 1.00933 0.93698 1.20873 0.96204 0.97927 0.96173 1.19866 0.89409 1.04555 0.99276 1.19613 0.84050 1.00320 0.95759 1.84008 1.18735 1.69144 1.38118 1.23983 0.97855 1.00209 0.83887 1.22694 0.91617 1.06264 1.01953 1.19792 0.94432 1.03467 0.94565 1.22656 0.86179 0.98047 1.00816 1.22035 1.01661 0.91834 0.90594 0.92682 0.99350 0.95852 0.95096 0.90954 0.91059 0.94143 0.89996 0.93857 0.85346 0.84909 0.85347 0.77505 0.82298 0.94388 0.89764 0.95425 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 21.69 27.47 -169.99 -4.67 17.02 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.51 -14.54 9.03 -34.44 -0.31 -14.85 16 8 H 0.08 2.46 7.37 -52.49 -0.39 2.08 16 9 C 0.16 4.01 3.79 -4.98 -0.02 3.99 16 10 N -0.53 -11.32 4.70 -235.91 -1.11 -12.43 16 11 C 0.05 0.95 5.61 -3.77 -0.02 0.93 16 12 C 0.06 0.89 5.61 -3.77 -0.02 0.87 16 13 N -0.53 -7.90 4.70 -235.91 -1.11 -9.00 16 14 C 0.09 1.13 5.11 -4.97 -0.03 1.11 16 15 C -0.02 -0.29 5.18 -104.37 -0.54 -0.83 16 16 C -0.12 -1.31 9.66 -39.58 -0.38 -1.70 16 17 C -0.09 -0.91 10.01 -39.54 -0.40 -1.30 16 18 C -0.11 -1.21 10.06 -39.48 -0.40 -1.61 16 19 C 0.05 0.64 7.41 -38.48 -0.29 0.36 16 20 O -0.20 -2.50 10.58 3.85 0.04 -2.46 16 21 C 0.01 0.06 11.96 29.24 0.35 0.41 16 22 C -0.21 -2.50 8.62 -37.63 -0.32 -2.83 16 23 C -0.12 -1.60 4.90 -105.16 -0.52 -2.11 16 24 C 0.05 0.83 4.14 -3.77 -0.02 0.81 16 25 C 0.07 1.35 5.43 -3.76 -0.02 1.33 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H -0.01 -0.28 7.18 -51.93 -0.37 -0.66 16 28 H 0.02 0.58 7.45 -51.93 -0.39 0.19 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 31 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.84 7.89 -51.93 -0.41 0.43 16 34 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 35 H 0.13 1.13 8.04 -52.49 -0.42 0.71 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.21 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.16 1.85 6.54 -52.48 -0.34 1.50 16 40 H 0.04 0.63 7.17 -51.93 -0.37 0.26 16 41 H 0.08 1.36 4.40 -51.93 -0.23 1.13 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.09 2.01 6.79 -51.93 -0.35 1.65 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -32.51 338.14 -10.24 -42.75 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.24 Total: -0.56 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -3.02 Total: -13.52 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -1.44 Total: -48.32 kcal Atomic # 8 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.51 -10.24 -42.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236744211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.514 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds