Wall clock time and date at job start Fri Apr 10 2020 20:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99522 * 2 1 4 4 H 1.48503 * 109.47014 * 269.99667 * 3 2 1 5 5 H 1.48495 * 109.47295 * 29.99770 * 3 2 1 6 6 H 1.48500 * 109.47015 * 150.00061 * 3 2 1 7 7 C 1.37870 * 120.00493 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00485 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47591 * 180.02562 * 9 7 2 11 11 C 1.46958 * 111.00140 * 170.00103 * 10 9 7 12 12 C 1.53049 * 109.36273 * 183.18678 * 11 10 9 13 13 N 1.46955 * 109.36481 * 301.59821 * 12 11 10 14 14 C 1.46902 * 111.00099 * 183.19117 * 13 12 11 15 15 C 1.50701 * 109.47618 * 170.00180 * 14 13 12 16 16 C 1.37761 * 120.19413 * 260.02490 * 15 14 13 17 17 C 1.38720 * 120.27151 * 179.97438 * 16 15 14 18 18 C 1.37862 * 120.69223 * 0.02562 * 17 16 15 19 19 C 1.38888 * 119.95756 * 359.97438 * 18 17 16 20 20 O 1.34836 * 133.42279 * 180.02562 * 19 18 17 21 21 C 1.34444 * 110.89695 * 179.97438 * 20 19 18 22 22 C 1.33987 * 110.15937 * 0.23232 * 21 20 19 23 23 C 1.39380 * 120.19752 * 79.99315 * 15 14 13 24 24 C 1.46958 * 110.88066 * 59.32236 * 13 12 11 25 25 C 1.46964 * 110.99732 * 293.79918 * 10 9 7 26 26 H 0.97003 * 120.00771 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47300 * 59.99544 * 9 7 2 28 28 H 1.08996 * 109.47047 * 300.00241 * 9 7 2 29 29 H 1.09001 * 109.48809 * 63.21978 * 11 10 9 30 30 H 1.08993 * 109.48872 * 303.15648 * 11 10 9 31 31 H 1.09002 * 109.48758 * 181.63367 * 12 11 10 32 32 H 1.08992 * 109.48853 * 61.56724 * 12 11 10 33 33 H 1.09005 * 109.47023 * 49.99465 * 14 13 12 34 34 H 1.09007 * 109.46944 * 290.00326 * 14 13 12 35 35 H 1.07996 * 119.86940 * 359.94990 * 16 15 14 36 36 H 1.07993 * 119.65629 * 180.02562 * 17 16 15 37 37 H 1.07996 * 120.02343 * 179.97438 * 18 17 16 38 38 H 1.08002 * 124.91593 * 179.97438 * 21 20 19 39 39 H 1.08006 * 126.90372 * 179.76195 * 22 21 20 40 40 H 1.08996 * 109.49011 * 60.65023 * 24 13 12 41 41 H 1.09003 * 109.48800 * 180.70985 * 24 13 12 42 42 H 1.09004 * 109.48747 * 296.77862 * 25 10 9 43 43 H 1.08993 * 109.48728 * 56.84367 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5115 -1.1939 0.0011 10 7 4.0013 -2.5789 0.0010 11 6 5.4508 -2.6249 -0.2367 12 6 5.9072 -4.0840 -0.3084 13 7 5.5603 -4.7653 0.9466 14 6 6.0501 -6.1503 0.9466 15 6 5.8975 -6.7372 2.3262 16 6 6.9812 -6.8053 3.1739 17 6 6.8424 -7.3447 4.4444 18 6 5.6231 -7.8202 4.8776 19 6 4.5178 -7.7610 4.0387 20 8 3.2295 -8.1350 4.1752 21 6 2.5307 -7.8641 3.0591 22 6 3.3285 -7.3055 2.1389 23 6 4.6589 -7.2138 2.7522 24 6 4.1108 -4.7193 1.1843 25 6 3.6544 -3.2602 1.2561 26 1 -0.4851 0.8400 -0.0004 27 1 3.8746 -0.6798 0.8911 28 1 3.8752 -0.6803 -0.8888 29 1 5.9693 -2.1214 0.5793 30 1 5.6811 -2.1251 -1.1775 31 1 6.9866 -4.1206 -0.4557 32 1 5.4092 -4.5802 -1.1413 33 1 7.1017 -6.1637 0.6602 34 1 5.4722 -6.7400 0.2349 35 1 7.9429 -6.4375 2.8481 36 1 7.6985 -7.3928 5.1009 37 1 5.5273 -8.2384 5.8687 38 1 1.4795 -8.0710 2.9224 39 1 3.0485 -6.9852 1.1462 40 1 3.5923 -5.2228 0.3684 41 1 3.8805 -5.2191 2.1252 42 1 4.1525 -2.7639 2.0890 43 1 2.5751 -3.2236 1.4034 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236744211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:19 Heat of formation + Delta-G solvation = 31.427740 kcal Electronic energy + Delta-G solvation = -24394.737456 eV Core-core repulsion = 21019.748304 eV Total energy + Delta-G solvation = -3374.989151 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.39671 -40.38455 -38.88486 -36.71657 -34.67841 -33.75476 -32.22925 -31.76938 -30.56027 -29.97225 -27.52409 -25.21478 -24.69189 -23.71470 -23.09672 -22.95846 -21.38340 -20.46069 -18.96494 -18.25604 -18.11948 -17.37188 -16.91066 -16.59428 -16.37511 -15.97665 -15.89552 -15.61402 -15.25772 -15.04844 -14.83595 -14.50577 -14.31436 -13.74146 -13.64012 -13.52393 -13.25147 -13.04392 -12.85065 -12.77138 -12.58649 -12.27907 -12.22535 -12.17077 -11.88992 -11.78674 -11.49340 -11.34577 -10.90506 -10.78502 -9.51670 -9.38813 -9.09293 -9.01115 -8.29934 -6.33508 -0.03446 0.43098 1.33353 1.35094 1.45215 1.45878 1.92240 2.33094 2.62554 3.02749 3.13799 3.20615 3.52746 3.73446 3.87923 3.98484 4.12782 4.20020 4.21948 4.28915 4.30602 4.42911 4.47639 4.51121 4.63486 4.65223 4.70270 4.79073 4.79745 4.86645 4.94989 4.97184 4.98908 5.08194 5.15018 5.26139 5.39347 5.48286 5.50774 5.61634 5.75378 5.90414 6.02291 6.10477 6.23379 6.33446 6.63528 6.71787 7.30236 8.86621 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.019442 B = 0.003746 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.852954 B = 7472.127595 C = 8229.467131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.010 3.990 3 Si 0.947 3.053 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.517 4.517 8 H 0.037 0.963 9 C 0.172 3.828 10 N -0.543 5.543 11 C 0.051 3.949 12 C 0.067 3.933 13 N -0.538 5.538 14 C 0.098 3.902 15 C -0.047 4.047 16 C -0.121 4.121 17 C -0.090 4.090 18 C -0.118 4.118 19 C 0.021 3.979 20 O -0.210 6.210 21 C 0.010 3.990 22 C -0.231 4.231 23 C -0.141 4.141 24 C 0.069 3.931 25 C 0.072 3.928 26 H 0.267 0.733 27 H -0.017 1.017 28 H 0.032 0.968 29 H 0.029 0.971 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.037 0.963 33 H 0.109 0.891 34 H 0.040 0.960 35 H 0.152 0.848 36 H 0.168 0.832 37 H 0.148 0.852 38 H 0.241 0.759 39 H 0.156 0.844 40 H 0.032 0.968 41 H 0.087 0.913 42 H 0.017 0.983 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.541 -17.121 6.457 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.188 4.188 3 Si 0.771 3.229 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.179 1.179 7 C -0.556 4.556 8 H 0.055 0.945 9 C 0.045 3.955 10 N -0.268 5.268 11 C -0.077 4.077 12 C -0.061 4.061 13 N -0.263 5.263 14 C -0.028 4.028 15 C -0.048 4.048 16 C -0.139 4.139 17 C -0.108 4.108 18 C -0.136 4.136 19 C -0.026 4.026 20 O -0.112 6.112 21 C -0.054 4.054 22 C -0.250 4.250 23 C -0.142 4.142 24 C -0.059 4.059 25 C -0.056 4.056 26 H 0.076 0.924 27 H 0.000 1.000 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.102 0.898 31 H 0.126 0.874 32 H 0.055 0.945 33 H 0.127 0.873 34 H 0.058 0.942 35 H 0.170 0.830 36 H 0.185 0.815 37 H 0.166 0.834 38 H 0.257 0.743 39 H 0.174 0.826 40 H 0.050 0.950 41 H 0.105 0.895 42 H 0.035 0.965 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.303 -17.125 6.669 24.567 hybrid contribution -0.755 1.036 -0.256 1.307 sum 15.549 -16.088 6.413 23.275 Atomic orbital electron populations 1.70040 1.08078 1.28145 1.52494 1.25825 0.95604 1.03081 0.94258 0.85712 0.79201 0.78632 0.79384 1.18657 1.20639 1.17894 1.21232 0.90996 0.93261 1.50065 0.94495 1.19919 0.94355 0.86358 0.94865 1.62052 1.13350 1.16991 1.34361 1.22263 0.87366 0.97281 1.00825 1.22165 1.01522 0.92709 0.89672 1.62197 1.13546 1.15487 1.35081 1.21028 1.02054 0.87214 0.92547 1.19384 0.91409 0.97195 0.96771 1.21258 0.98984 0.99964 0.93742 1.21307 0.96769 0.96472 0.96267 1.20291 0.89221 1.04189 0.99944 1.20066 0.84609 1.01483 0.96456 1.83995 1.19024 1.69386 1.38765 1.24624 0.98962 0.98802 0.82993 1.22791 0.92095 1.07740 1.02341 1.20064 0.95077 1.04061 0.95044 1.22368 0.87774 0.94858 1.00852 1.21918 0.99533 0.94269 0.89901 0.92377 0.99951 0.95043 0.95243 0.89756 0.87359 0.94452 0.87302 0.94159 0.83025 0.81495 0.83397 0.74302 0.82599 0.94997 0.89495 0.96501 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.84 13.96 21.44 0.30 -59.54 16 2 C 0.01 0.57 5.47 84.65 0.46 1.04 16 3 Si 0.95 44.73 27.47 68.60 1.88 46.61 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.25 -11.42 6.54 99.48 0.65 -10.77 16 7 C -0.52 -30.64 9.03 25.60 0.23 -30.41 16 8 H 0.04 2.43 7.37 -2.91 -0.02 2.41 16 9 C 0.17 8.55 3.79 85.56 0.32 8.88 16 10 N -0.54 -23.41 4.70 -900.28 -4.23 -27.64 16 11 C 0.05 1.70 5.61 86.31 0.48 2.18 16 12 C 0.07 1.78 5.61 86.31 0.48 2.26 16 13 N -0.54 -15.06 4.70 -900.28 -4.23 -19.29 16 14 C 0.10 2.18 5.11 85.56 0.44 2.62 16 15 C -0.05 -1.10 5.18 -19.70 -0.10 -1.20 16 16 C -0.12 -2.25 9.66 22.27 0.22 -2.04 16 17 C -0.09 -1.48 10.01 22.30 0.22 -1.26 16 18 C -0.12 -2.34 10.06 22.34 0.22 -2.12 16 19 C 0.02 0.52 7.41 22.98 0.17 0.69 16 20 O -0.21 -5.30 10.58 -9.15 -0.10 -5.40 16 21 C 0.01 0.22 11.96 66.85 0.80 1.02 16 22 C -0.23 -5.74 8.62 23.54 0.20 -5.54 16 23 C -0.14 -3.69 4.90 -20.21 -0.10 -3.79 16 24 C 0.07 2.31 4.14 86.31 0.36 2.67 16 25 C 0.07 3.02 5.43 86.31 0.47 3.49 16 26 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 27 H -0.02 -0.87 7.18 -2.38 -0.02 -0.88 16 28 H 0.03 1.51 7.45 -2.39 -0.02 1.49 16 29 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 2.60 8.07 -2.39 -0.02 2.58 16 31 H 0.11 2.14 8.07 -2.39 -0.02 2.12 16 32 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.11 1.83 7.89 -2.38 -0.02 1.81 16 34 H 0.04 0.93 8.12 -2.38 -0.02 0.91 16 35 H 0.15 2.04 8.04 -2.91 -0.02 2.02 16 36 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.24 3.14 8.06 -2.91 -0.02 3.12 16 39 H 0.16 3.83 6.54 -2.91 -0.02 3.81 16 40 H 0.03 1.09 7.17 -2.39 -0.02 1.07 16 41 H 0.09 2.88 4.40 -2.39 -0.01 2.87 16 42 H 0.02 0.72 8.14 -2.38 -0.02 0.71 16 43 H 0.06 2.66 6.79 -2.39 -0.02 2.64 16 Total: -1.00 -72.94 338.14 -0.55 -73.49 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.95 Total: 13.26 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: 4.88 Total: -21.50 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -8.16 Total: -106.46 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.10 Total: -5.40 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.61 kcal Total: -72.94 -0.55 -73.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236744211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.914 kcal (2) G-P(sol) polarization free energy of solvation -72.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds