Wall clock time and date at job start Fri Apr 10 2020 20:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35447 * 117.00285 * 2 1 4 4 C 1.39152 * 119.92354 * 0.02562 * 3 2 1 5 5 C 1.36369 * 120.50624 * 179.97438 * 4 3 2 6 6 C 1.41023 * 120.34866 * 0.02562 * 5 4 3 7 7 C 1.41288 * 120.07653 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00059 * 24.65043 * 7 6 5 9 9 C 1.39872 * 120.00001 * 204.65598 * 7 6 5 10 10 N 1.30887 * 120.00027 * 17.98075 * 9 7 6 11 11 Si 1.86797 * 119.99773 * 197.98837 * 9 7 6 12 12 H 1.48497 * 109.47530 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47006 * 119.99809 * 11 9 7 14 14 H 1.48503 * 109.46844 * 239.99361 * 11 9 7 15 15 C 1.40385 * 119.84422 * 359.97438 * 6 5 4 16 16 C 1.39399 * 119.50033 * 359.74860 * 15 6 5 17 17 C 1.46790 * 120.17418 * 180.27280 * 16 15 6 18 18 C 1.35053 * 119.42294 * 104.95649 * 17 16 15 19 19 C 1.40502 * 121.60480 * 179.51443 * 18 17 16 20 20 O 1.21457 * 119.73836 * 180.02562 * 19 18 17 21 21 C 1.50702 * 120.51824 * 0.30479 * 19 18 17 22 22 C 1.53200 * 109.07371 * 330.94047 * 21 19 18 23 23 C 1.53003 * 109.57006 * 297.03771 * 22 21 19 24 24 C 1.52994 * 109.56982 * 176.67109 * 22 21 19 25 25 C 1.50532 * 119.41990 * 285.23337 * 17 16 15 26 26 H 1.09008 * 109.47335 * 60.00035 * 1 2 3 27 27 H 1.09000 * 109.47670 * 300.00420 * 1 2 3 28 28 H 1.08992 * 109.47752 * 179.97438 * 1 2 3 29 29 H 1.07994 * 119.74508 * 0.02562 * 4 3 2 30 30 H 1.07996 * 119.81908 * 180.02562 * 5 4 3 31 31 H 0.96999 * 119.99895 * 180.02562 * 10 9 7 32 32 H 1.07999 * 120.25103 * 180.02562 * 15 6 5 33 33 H 1.08005 * 119.19861 * 359.75907 * 18 17 16 34 34 H 1.08995 * 109.53610 * 211.06417 * 21 19 18 35 35 H 1.09001 * 109.59985 * 90.85622 * 21 19 18 36 36 H 1.08993 * 109.46778 * 179.39427 * 23 22 21 37 37 H 1.09004 * 109.46662 * 299.39134 * 23 22 21 38 38 H 1.08995 * 109.47233 * 59.39287 * 23 22 21 39 39 H 1.09000 * 109.47090 * 300.60851 * 24 22 21 40 40 H 1.09002 * 109.46965 * 60.60444 * 24 22 21 41 41 H 1.08995 * 109.47140 * 180.60455 * 24 22 21 42 42 H 1.09006 * 109.46961 * 329.75177 * 25 17 16 43 43 H 1.08998 * 109.47302 * 89.74952 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0439 1.2068 0.0000 4 6 1.2845 2.3729 0.0005 5 6 1.8913 3.5941 0.0011 6 6 3.2982 3.6907 0.0005 7 6 3.9208 4.9590 0.0005 8 1 3.3959 5.8183 0.3910 9 6 5.2171 5.1018 -0.5053 10 7 5.7206 4.1789 -1.2850 11 14 6.2295 6.6093 -0.0678 12 1 5.4376 7.4965 0.8216 13 1 7.4700 6.1868 0.6310 14 1 6.5859 7.3433 -1.3086 15 6 4.0786 2.5238 0.0000 16 6 3.4517 1.2787 0.0053 17 6 4.2533 0.0491 0.0109 18 6 4.3610 -0.6675 1.1505 19 6 5.1079 -1.8563 1.2050 20 8 5.1816 -2.4743 2.2480 21 6 5.8234 -2.3673 -0.0190 22 6 5.0626 -1.9145 -1.2692 23 6 3.6642 -2.5353 -1.2711 24 6 5.8240 -2.3564 -2.5205 25 6 4.9460 -0.3878 -1.2522 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2064 2.3102 0.0014 30 1 1.2911 4.4920 0.0019 31 1 6.6197 4.2777 -1.6354 32 1 5.1565 2.5901 0.0000 33 1 3.8576 -0.3204 2.0408 34 1 5.8623 -3.4562 0.0096 35 1 6.8369 -1.9668 -0.0439 36 1 3.1207 -2.2035 -2.1557 37 1 3.7492 -3.6220 -1.2832 38 1 3.1267 -2.2228 -0.3759 39 1 6.8214 -1.9167 -2.5132 40 1 5.9062 -3.4432 -2.5309 41 1 5.2869 -2.0241 -3.4089 42 1 4.3685 -0.0580 -2.1159 43 1 5.9421 0.0530 -1.2914 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242315435.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:22 Heat of formation + Delta-G solvation = -70.867938 kcal Electronic energy + Delta-G solvation = -24851.683938 eV Core-core repulsion = 21439.966162 eV Total energy + Delta-G solvation = -3411.717776 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.54059 -40.41203 -38.52790 -38.04485 -35.45768 -34.58435 -31.33195 -30.99599 -29.60673 -28.40685 -28.19113 -27.70753 -26.46441 -24.30887 -22.54267 -21.71254 -20.92744 -19.09819 -18.55667 -18.07105 -17.26593 -16.97229 -16.76156 -16.37033 -16.23080 -15.91002 -15.52183 -15.22956 -14.89418 -14.79328 -14.31745 -14.11257 -14.07181 -13.80145 -13.35559 -13.13986 -13.06899 -12.87941 -12.77615 -12.64838 -12.60720 -12.43313 -12.34348 -12.01579 -11.81002 -11.71758 -11.67678 -11.58141 -11.26423 -10.86590 -10.49575 -10.06511 -9.40572 -8.91641 -8.58935 -6.22832 -0.12486 0.79758 0.98408 1.40999 1.48824 1.54116 2.01915 2.23000 2.66698 2.76837 3.34206 3.52498 3.57507 3.82131 3.86637 3.97893 4.26512 4.29000 4.36680 4.41734 4.47725 4.55891 4.63832 4.67364 4.73453 4.75863 4.88191 4.91896 5.00298 5.03907 5.11284 5.14684 5.15695 5.21649 5.27253 5.29412 5.40004 5.44087 5.51003 5.53335 5.65542 5.83558 6.00083 6.21084 6.54508 6.63230 6.77224 6.94726 7.04497 8.36773 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.013185 B = 0.005409 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.109245 B = 5174.970735 C = 6286.580206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.333 6.333 3 C 0.023 3.977 4 C -0.170 4.170 5 C -0.195 4.195 6 C 0.055 3.945 7 C -0.498 4.498 8 H 0.073 0.927 9 C 0.039 3.961 10 N -0.823 5.823 11 Si 0.973 3.027 12 H -0.262 1.262 13 H -0.267 1.267 14 H -0.266 1.266 15 C -0.129 4.129 16 C -0.105 4.105 17 C 0.091 3.909 18 C -0.279 4.279 19 C 0.401 3.599 20 O -0.524 6.524 21 C -0.151 4.151 22 C -0.048 4.048 23 C -0.146 4.146 24 C -0.134 4.134 25 C -0.088 4.088 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.113 0.887 29 H 0.130 0.870 30 H 0.105 0.895 31 H 0.288 0.712 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.039 0.961 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.870 -9.537 -4.390 10.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.248 6.248 3 C -0.022 4.022 4 C -0.189 4.189 5 C -0.214 4.214 6 C 0.052 3.948 7 C -0.528 4.528 8 H 0.091 0.909 9 C -0.175 4.175 10 N -0.449 5.449 11 Si 0.795 3.205 12 H -0.186 1.186 13 H -0.192 1.192 14 H -0.191 1.191 15 C -0.149 4.149 16 C -0.105 4.105 17 C 0.090 3.910 18 C -0.298 4.298 19 C 0.288 3.712 20 O -0.408 6.408 21 C -0.188 4.188 22 C -0.048 4.048 23 C -0.203 4.203 24 C -0.191 4.191 25 C -0.124 4.124 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.132 0.868 29 H 0.148 0.852 30 H 0.123 0.877 31 H 0.099 0.901 32 H 0.133 0.867 33 H 0.117 0.883 34 H 0.128 0.872 35 H 0.135 0.865 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.563 -10.092 -4.023 10.879 hybrid contribution -0.186 1.463 0.407 1.530 sum -0.748 -8.629 -3.616 9.386 Atomic orbital electron populations 1.23087 0.78250 1.04330 1.01130 1.85818 1.21788 1.26797 1.90396 1.18682 0.90440 0.84246 1.08815 1.20655 0.99199 0.92005 1.07000 1.20886 0.94447 0.96444 1.09665 1.17803 0.91722 0.93816 0.91410 1.19682 1.00078 0.95024 1.38005 0.90861 1.26569 0.98356 1.00653 0.91966 1.69843 1.16885 1.35288 1.22932 0.85280 0.78100 0.77996 0.79118 1.18590 1.19166 1.19082 1.21235 0.99201 0.89644 1.04793 1.18351 0.90249 0.93144 1.08795 1.21324 0.86260 0.88919 0.94454 1.21882 1.08794 1.00211 0.98959 1.21178 0.77009 0.83547 0.89506 1.90516 1.57427 1.58516 1.34296 1.22244 1.00848 1.03744 0.92006 1.20576 0.96316 0.92381 0.95574 1.21951 0.95291 1.01053 1.02014 1.21808 1.00000 1.02333 0.94986 1.21019 1.00971 0.96301 0.94121 0.92816 0.93216 0.86829 0.85188 0.87697 0.90142 0.86730 0.88274 0.87233 0.86537 0.91990 0.90918 0.94165 0.91438 0.90536 0.91810 0.90108 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.80 113.37 1.11 1.84 16 2 O -0.33 -12.36 9.93 -87.44 -0.87 -13.22 16 3 C 0.02 0.96 6.73 23.16 0.16 1.12 16 4 C -0.17 -7.12 8.95 22.05 0.20 -6.93 16 5 C -0.19 -9.14 9.72 22.52 0.22 -8.92 16 6 C 0.05 2.83 5.57 -21.32 -0.12 2.72 16 7 C -0.50 -25.97 9.04 23.42 0.21 -25.76 16 8 H 0.07 3.73 7.91 -2.91 -0.02 3.70 16 9 C 0.04 1.90 5.13 85.23 0.44 2.34 16 10 N -0.82 -40.64 10.97 21.82 0.24 -40.40 16 11 Si 0.97 37.29 29.60 68.60 2.03 39.32 16 12 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 13 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 14 H -0.27 -9.73 7.11 99.48 0.71 -9.03 16 15 C -0.13 -6.47 8.44 23.07 0.19 -6.28 16 16 C -0.10 -4.68 5.21 -20.09 -0.10 -4.78 16 17 C 0.09 3.47 4.06 -18.41 -0.07 3.39 16 18 C -0.28 -10.75 8.49 22.09 0.19 -10.56 16 19 C 0.40 13.94 6.07 26.24 0.16 14.10 16 20 O -0.52 -21.34 17.82 -3.58 -0.06 -21.41 16 21 C -0.15 -3.75 4.88 29.92 0.15 -3.61 16 22 C -0.05 -1.15 0.78 -52.07 -0.04 -1.19 16 23 C -0.15 -3.61 8.09 71.98 0.58 -3.02 16 24 C -0.13 -2.33 8.50 71.98 0.61 -1.72 16 25 C -0.09 -2.68 4.67 29.84 0.14 -2.54 16 26 H 0.05 1.35 7.65 -2.38 -0.02 1.33 16 27 H 0.05 1.28 7.64 -2.39 -0.02 1.27 16 28 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.13 4.53 6.25 -2.91 -0.02 4.51 16 30 H 0.10 4.61 8.06 -2.91 -0.02 4.58 16 31 H 0.29 12.81 8.30 -92.71 -0.77 12.04 16 32 H 0.11 5.99 6.16 -2.91 -0.02 5.97 16 33 H 0.10 4.25 8.04 -2.91 -0.02 4.22 16 34 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.04 1.22 6.13 -2.39 -0.01 1.20 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.08 2.58 8.10 -2.38 -0.02 2.56 16 43 H 0.10 2.90 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -61.88 351.27 6.35 -55.53 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 1.00 Total: 29.98 kcal Atomic # 6 Polarization: -53.81 SS G_CDS: 4.01 Total: -49.80 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.24 Total: -40.40 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.93 Total: -34.63 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 2.03 Total: 39.32 kcal Total: -61.88 6.35 -55.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242315435.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.339 kcal (2) G-P(sol) polarization free energy of solvation -61.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds