Wall clock time and date at job start Fri Apr 10 2020 20:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35646 * 117.00220 * 2 1 4 4 C 1.37774 * 120.17442 * 359.97438 * 3 2 1 5 5 C 1.40257 * 119.88056 * 180.02562 * 4 3 2 6 6 C 1.46474 * 119.88991 * 180.02562 * 5 4 3 7 7 C 1.35360 * 119.43846 * 64.99420 * 6 5 4 8 8 C 1.40531 * 121.55840 * 180.18984 * 7 6 5 9 9 O 1.21478 * 119.74030 * 180.24468 * 8 7 6 10 10 C 1.50698 * 120.51195 * 0.22705 * 8 7 6 11 11 C 1.53183 * 109.09352 * 28.85574 * 10 8 7 12 12 C 1.52995 * 109.56885 * 62.87879 * 11 10 8 13 13 C 1.52996 * 109.56710 * 183.23115 * 11 10 8 14 14 C 1.50538 * 119.43435 * 244.72788 * 6 5 4 15 15 C 1.40700 * 120.21995 * 0.02562 * 5 4 3 16 16 C 1.35833 * 120.35497 * 359.68695 * 15 5 4 17 17 C 1.41146 * 120.11356 * 0.57172 * 16 15 5 18 18 C 1.40444 * 120.10922 * 179.73440 * 17 16 15 19 19 H 1.07998 * 119.99929 * 154.31921 * 18 17 16 20 20 C 1.40410 * 120.00019 * 334.31812 * 18 17 16 21 21 N 1.30571 * 120.00052 * 334.58897 * 20 18 17 22 22 Si 1.86804 * 120.00037 * 154.58956 * 20 18 17 23 23 H 1.48495 * 109.47323 * 179.97438 * 22 20 18 24 24 H 1.48502 * 109.47135 * 300.00421 * 22 20 18 25 25 H 1.48505 * 109.46948 * 59.99840 * 22 20 18 26 26 H 1.09001 * 109.47711 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47210 * 300.00436 * 1 2 3 28 28 H 1.09006 * 109.47342 * 60.00091 * 1 2 3 29 29 H 1.08004 * 120.05932 * 359.97438 * 4 3 2 30 30 H 1.07995 * 119.22555 * 0.22097 * 7 6 5 31 31 H 1.09000 * 109.53182 * 148.73920 * 10 8 7 32 32 H 1.08997 * 109.53039 * 268.89140 * 10 8 7 33 33 H 1.08997 * 109.47452 * 59.99448 * 12 11 10 34 34 H 1.08999 * 109.47675 * 180.02562 * 12 11 10 35 35 H 1.09006 * 109.47182 * 300.00201 * 12 11 10 36 36 H 1.09008 * 109.46940 * 60.00068 * 13 11 10 37 37 H 1.09004 * 109.47356 * 179.97438 * 13 11 10 38 38 H 1.08993 * 109.47335 * 299.99960 * 13 11 10 39 39 H 1.09000 * 109.46809 * 270.25803 * 14 6 5 40 40 H 1.08994 * 109.47594 * 30.25201 * 14 6 5 41 41 H 1.08007 * 119.82519 * 179.97438 * 15 5 4 42 42 H 1.07992 * 119.94498 * 180.27935 * 16 15 5 43 43 H 0.97000 * 120.00146 * 354.17724 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2980 2.3664 -0.0005 5 6 1.9412 3.6128 -0.0011 6 6 1.1474 4.8438 -0.0011 7 6 0.3685 5.1331 1.0675 8 6 -0.4140 6.2995 1.1129 9 8 -1.0977 6.5288 2.0905 10 6 -0.4112 7.2682 -0.0415 11 6 -0.1219 6.5033 -1.3367 12 6 -1.2408 5.4925 -1.5958 13 6 -0.0368 7.4876 -2.5050 14 6 1.2165 5.7686 -1.1869 15 6 3.3463 3.6845 -0.0016 16 6 4.0917 2.5490 0.0048 17 6 3.4596 1.2870 -0.0002 18 6 4.2303 0.1129 0.0008 19 1 3.8204 -0.8018 0.4028 20 6 5.5339 0.1284 -0.5208 21 7 5.8662 1.0135 -1.4214 22 14 6.7927 -1.1171 0.0738 23 1 8.0822 -0.8908 -0.6269 24 1 6.9900 -0.9615 1.5374 25 1 6.3062 -2.4898 -0.2168 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 0.2192 2.3143 -0.0014 30 1 0.3482 4.4518 1.9051 31 1 -1.3854 7.7519 -0.1137 32 1 0.3593 8.0225 0.1176 33 1 -2.1909 6.0183 -1.6898 34 1 -1.0333 4.9488 -2.5174 35 1 -1.2953 4.7898 -0.7642 36 1 0.7646 8.2029 -2.3197 37 1 0.1695 6.9418 -3.4257 38 1 -0.9833 8.0193 -2.6018 39 1 2.0173 6.4926 -1.0368 40 1 1.4149 5.1892 -2.0885 41 1 3.8350 4.6477 -0.0025 42 1 5.1698 2.6118 0.0089 43 1 5.1925 1.6049 -1.7920 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242315458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:25 Heat of formation + Delta-G solvation = -65.853515 kcal Electronic energy + Delta-G solvation = -24373.031422 eV Core-core repulsion = 20961.531087 eV Total energy + Delta-G solvation = -3411.500334 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.24685 -38.86037 -37.34192 -36.40402 -34.61564 -32.60606 -29.82037 -29.09582 -28.65079 -27.41808 -26.79561 -26.55466 -25.28876 -22.32315 -20.93932 -20.33356 -19.78438 -18.26421 -17.14058 -16.57969 -15.62540 -15.45789 -15.11438 -14.84747 -14.79375 -14.65478 -14.23694 -14.09931 -13.86343 -13.40635 -13.05730 -13.00263 -12.62493 -12.34219 -12.20650 -12.12387 -11.84987 -11.72048 -11.53144 -11.29570 -11.15834 -10.97974 -10.88478 -10.79246 -10.55363 -10.47890 -10.17815 -10.07329 -9.67931 -9.25991 -9.15485 -8.66802 -7.75783 -7.55589 -7.18274 -4.50029 1.17697 2.44997 2.75587 3.07578 3.13443 3.28181 3.35194 3.88063 4.28865 4.35641 4.47391 4.53309 4.74183 4.90400 5.17494 5.26563 5.36522 5.42361 5.52087 5.54754 5.63180 5.67238 5.69997 5.71435 5.76621 5.80389 5.82305 5.96434 5.99966 6.07235 6.09682 6.13363 6.26864 6.42317 6.52504 6.70335 6.82721 6.90644 6.99967 7.26676 7.44224 7.55925 7.70676 7.87019 7.94424 8.03100 8.20286 8.59397 8.79090 9.81770 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.019885 B = 0.003955 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.779959 B = 7077.353503 C = 7553.230203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.312 6.312 3 C 0.004 3.996 4 C -0.133 4.133 5 C -0.224 4.224 6 C 0.096 3.904 7 C -0.295 4.295 8 C 0.396 3.604 9 O -0.494 6.494 10 C -0.159 4.159 11 C -0.057 4.057 12 C -0.148 4.148 13 C -0.140 4.140 14 C -0.095 4.095 15 C -0.065 4.065 16 C -0.216 4.216 17 C 0.094 3.906 18 C -0.481 4.481 19 H 0.086 0.914 20 C 0.036 3.964 21 N -0.778 5.778 22 Si 1.067 2.933 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.273 1.273 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.100 0.900 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.580 6.440 -3.179 9.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.226 6.226 3 C -0.040 4.040 4 C -0.152 4.152 5 C -0.226 4.226 6 C 0.095 3.905 7 C -0.314 4.314 8 C 0.280 3.720 9 O -0.375 6.375 10 C -0.197 4.197 11 C -0.057 4.057 12 C -0.206 4.206 13 C -0.197 4.197 14 C -0.132 4.132 15 C -0.084 4.084 16 C -0.235 4.235 17 C 0.091 3.909 18 C -0.507 4.507 19 H 0.104 0.896 20 C -0.188 4.188 21 N -0.400 5.400 22 Si 0.889 3.111 23 H -0.197 1.197 24 H -0.197 1.197 25 H -0.198 1.198 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.118 0.882 30 H 0.142 0.858 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.131 0.869 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.228 5.952 -2.892 8.433 hybrid contribution -1.896 0.622 0.104 1.998 sum -7.124 6.574 -2.788 10.087 Atomic orbital electron populations 1.22754 0.81450 1.01964 1.00022 1.85958 1.18400 1.27926 1.90355 1.18901 0.92111 0.82770 1.10221 1.20627 0.97165 0.91549 1.05882 1.17748 0.92419 0.90298 1.22107 1.21236 0.87065 0.91150 0.91025 1.22067 1.06492 1.01487 1.01329 1.20808 0.78599 0.86072 0.86500 1.90542 1.37605 1.75494 1.33860 1.22223 1.04013 0.98928 0.94526 1.20640 0.95345 0.95385 0.94378 1.21967 0.97321 0.98806 1.02473 1.21845 1.01848 0.98578 0.97425 1.21083 0.96783 0.97699 0.97596 1.20265 0.91857 0.97003 0.99286 1.20521 0.98812 0.91220 1.12973 1.17172 0.88118 0.93734 0.91912 1.20637 0.99170 0.97563 1.33377 0.89632 1.27257 0.99111 0.99309 0.93129 1.70369 1.40152 1.13412 1.16020 0.83607 0.75212 0.74892 0.77355 1.19657 1.19713 1.19830 0.89819 0.94103 0.94125 0.88248 0.85776 0.89404 0.88664 0.92609 0.92077 0.92077 0.92380 0.92100 0.92439 0.89457 0.89463 0.88908 0.86902 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.81 101.05 0.99 1.56 16 2 O -0.31 -6.97 9.77 -18.64 -0.18 -7.15 16 3 C 0.00 0.09 6.71 -38.43 -0.26 -0.17 16 4 C -0.13 -2.82 8.68 -38.99 -0.34 -3.16 16 5 C -0.22 -4.52 5.26 -104.89 -0.55 -5.07 16 6 C 0.10 1.61 4.52 -102.41 -0.46 1.15 16 7 C -0.29 -5.09 8.39 -39.74 -0.33 -5.42 16 8 C 0.40 6.47 6.08 -33.45 -0.20 6.26 16 9 O -0.49 -9.61 17.82 5.39 0.10 -9.52 16 10 C -0.16 -1.97 4.87 -27.79 -0.14 -2.10 16 11 C -0.06 -0.66 0.78 -154.20 -0.12 -0.78 16 12 C -0.15 -1.77 8.10 37.16 0.30 -1.47 16 13 C -0.14 -1.26 8.50 37.16 0.32 -0.95 16 14 C -0.09 -1.27 4.67 -27.75 -0.13 -1.40 16 15 C -0.07 -1.39 9.67 -39.51 -0.38 -1.77 16 16 C -0.22 -5.12 7.86 -39.34 -0.31 -5.43 16 17 C 0.09 2.37 5.31 -106.64 -0.57 1.81 16 18 C -0.48 -12.23 8.63 -37.93 -0.33 -12.56 16 19 H 0.09 2.19 7.71 -52.49 -0.40 1.79 16 20 C 0.04 0.86 4.93 -17.27 -0.09 0.77 16 21 N -0.78 -19.24 12.29 55.57 0.68 -18.55 16 22 Si 1.07 20.34 30.01 -169.99 -5.10 15.24 16 23 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 24 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 25 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.04 0.64 7.66 -51.93 -0.40 0.25 16 28 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 29 H 0.10 1.92 6.29 -52.48 -0.33 1.59 16 30 H 0.12 2.35 8.04 -52.49 -0.42 1.93 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.84 6.12 -51.93 -0.32 0.53 16 36 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 41 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 42 H 0.11 2.74 6.47 -52.49 -0.34 2.40 16 43 H 0.30 7.64 6.69 -40.82 -0.27 7.37 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -27.82 350.07 -8.15 -35.97 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.33 Total: 7.45 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: -2.60 Total: -28.72 kcal Atomic # 7 Polarization: -19.24 SS G_CDS: 0.68 Total: -18.55 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.09 Total: -16.67 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.10 Total: 15.24 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.82 -8.15 -35.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242315458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.880 kcal (2) G-P(sol) polarization free energy of solvation -27.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds