Wall clock time and date at job start Fri Apr 10 2020 20:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35646 * 117.00220 * 2 1 4 4 C 1.37774 * 120.17442 * 359.97438 * 3 2 1 5 5 C 1.40257 * 119.88056 * 180.02562 * 4 3 2 6 6 C 1.46474 * 119.88991 * 180.02562 * 5 4 3 7 7 C 1.35360 * 119.43846 * 64.99420 * 6 5 4 8 8 C 1.40531 * 121.55840 * 180.18984 * 7 6 5 9 9 O 1.21478 * 119.74030 * 180.24468 * 8 7 6 10 10 C 1.50698 * 120.51195 * 0.22705 * 8 7 6 11 11 C 1.53183 * 109.09352 * 28.85574 * 10 8 7 12 12 C 1.52995 * 109.56885 * 62.87879 * 11 10 8 13 13 C 1.52996 * 109.56710 * 183.23115 * 11 10 8 14 14 C 1.50538 * 119.43435 * 244.72788 * 6 5 4 15 15 C 1.40700 * 120.21995 * 0.02562 * 5 4 3 16 16 C 1.35833 * 120.35497 * 359.68695 * 15 5 4 17 17 C 1.41146 * 120.11356 * 0.57172 * 16 15 5 18 18 C 1.40444 * 120.10922 * 179.73440 * 17 16 15 19 19 H 1.07998 * 119.99929 * 154.31921 * 18 17 16 20 20 C 1.40410 * 120.00019 * 334.31812 * 18 17 16 21 21 N 1.30571 * 120.00052 * 334.58897 * 20 18 17 22 22 Si 1.86804 * 120.00037 * 154.58956 * 20 18 17 23 23 H 1.48495 * 109.47323 * 179.97438 * 22 20 18 24 24 H 1.48502 * 109.47135 * 300.00421 * 22 20 18 25 25 H 1.48505 * 109.46948 * 59.99840 * 22 20 18 26 26 H 1.09001 * 109.47711 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47210 * 300.00436 * 1 2 3 28 28 H 1.09006 * 109.47342 * 60.00091 * 1 2 3 29 29 H 1.08004 * 120.05932 * 359.97438 * 4 3 2 30 30 H 1.07995 * 119.22555 * 0.22097 * 7 6 5 31 31 H 1.09000 * 109.53182 * 148.73920 * 10 8 7 32 32 H 1.08997 * 109.53039 * 268.89140 * 10 8 7 33 33 H 1.08997 * 109.47452 * 59.99448 * 12 11 10 34 34 H 1.08999 * 109.47675 * 180.02562 * 12 11 10 35 35 H 1.09006 * 109.47182 * 300.00201 * 12 11 10 36 36 H 1.09008 * 109.46940 * 60.00068 * 13 11 10 37 37 H 1.09004 * 109.47356 * 179.97438 * 13 11 10 38 38 H 1.08993 * 109.47335 * 299.99960 * 13 11 10 39 39 H 1.09000 * 109.46809 * 270.25803 * 14 6 5 40 40 H 1.08994 * 109.47594 * 30.25201 * 14 6 5 41 41 H 1.08007 * 119.82519 * 179.97438 * 15 5 4 42 42 H 1.07992 * 119.94498 * 180.27935 * 16 15 5 43 43 H 0.97000 * 120.00146 * 354.17724 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2980 2.3664 -0.0005 5 6 1.9412 3.6128 -0.0011 6 6 1.1474 4.8438 -0.0011 7 6 0.3685 5.1331 1.0675 8 6 -0.4140 6.2995 1.1129 9 8 -1.0977 6.5288 2.0905 10 6 -0.4112 7.2682 -0.0415 11 6 -0.1219 6.5033 -1.3367 12 6 -1.2408 5.4925 -1.5958 13 6 -0.0368 7.4876 -2.5050 14 6 1.2165 5.7686 -1.1869 15 6 3.3463 3.6845 -0.0016 16 6 4.0917 2.5490 0.0048 17 6 3.4596 1.2870 -0.0002 18 6 4.2303 0.1129 0.0008 19 1 3.8204 -0.8018 0.4028 20 6 5.5339 0.1284 -0.5208 21 7 5.8662 1.0135 -1.4214 22 14 6.7927 -1.1171 0.0738 23 1 8.0822 -0.8908 -0.6269 24 1 6.9900 -0.9615 1.5374 25 1 6.3062 -2.4898 -0.2168 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 0.2192 2.3143 -0.0014 30 1 0.3482 4.4518 1.9051 31 1 -1.3854 7.7519 -0.1137 32 1 0.3593 8.0225 0.1176 33 1 -2.1909 6.0183 -1.6898 34 1 -1.0333 4.9488 -2.5174 35 1 -1.2953 4.7898 -0.7642 36 1 0.7646 8.2029 -2.3197 37 1 0.1695 6.9418 -3.4257 38 1 -0.9833 8.0193 -2.6018 39 1 2.0173 6.4926 -1.0368 40 1 1.4149 5.1892 -2.0885 41 1 3.8350 4.6477 -0.0025 42 1 5.1698 2.6118 0.0089 43 1 5.1925 1.6049 -1.7920 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242315458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:25 Heat of formation + Delta-G solvation = -79.019938 kcal Electronic energy + Delta-G solvation = -24373.602361 eV Core-core repulsion = 20961.531087 eV Total energy + Delta-G solvation = -3412.071273 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.51174 -40.54103 -38.68667 -37.99927 -36.22832 -34.07001 -31.37670 -30.82389 -29.94552 -28.36736 -28.06689 -27.70267 -26.94847 -23.90030 -22.63423 -21.81459 -20.97121 -20.05330 -18.47343 -17.94441 -17.12981 -16.79860 -16.58499 -16.47223 -16.36326 -15.96420 -15.61798 -15.31065 -14.99043 -14.94056 -14.72975 -14.22020 -14.11354 -13.86064 -13.36900 -13.15461 -13.09153 -12.92372 -12.79393 -12.63289 -12.58574 -12.39318 -12.09945 -11.96700 -11.94674 -11.74842 -11.66367 -11.59005 -11.29991 -10.94580 -10.52680 -10.12552 -9.51612 -9.39218 -8.96349 -6.37478 -0.21283 0.72621 0.94513 1.51203 1.60690 1.80719 2.00474 2.30252 2.57183 2.77348 3.33595 3.38229 3.52498 3.78015 3.83409 4.00033 4.13284 4.24340 4.33317 4.34200 4.36312 4.40699 4.53682 4.63422 4.64267 4.69492 4.80734 4.85136 4.88225 4.94098 5.00403 5.08348 5.11171 5.20415 5.21425 5.29691 5.34392 5.43751 5.46645 5.50825 5.70340 5.74699 5.88276 6.05040 6.24532 6.42945 6.64188 6.77512 7.04647 7.96297 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.019885 B = 0.003955 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.779959 B = 7077.353503 C = 7553.230203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.339 6.339 3 C -0.010 4.010 4 C -0.139 4.139 5 C -0.205 4.205 6 C 0.102 3.898 7 C -0.297 4.297 8 C 0.398 3.602 9 O -0.530 6.530 10 C -0.151 4.151 11 C -0.049 4.049 12 C -0.152 4.152 13 C -0.135 4.135 14 C -0.094 4.094 15 C -0.073 4.073 16 C -0.224 4.224 17 C 0.062 3.938 18 C -0.524 4.524 19 H 0.069 0.931 20 C 0.007 3.993 21 N -0.799 5.799 22 Si 1.115 2.885 23 H -0.266 1.266 24 H -0.264 1.264 25 H -0.261 1.261 26 H 0.114 0.886 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.120 0.880 42 H 0.100 0.900 43 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.667 8.646 -4.132 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.254 6.254 3 C -0.055 4.055 4 C -0.158 4.158 5 C -0.206 4.206 6 C 0.101 3.899 7 C -0.317 4.317 8 C 0.285 3.715 9 O -0.413 6.413 10 C -0.189 4.189 11 C -0.049 4.049 12 C -0.209 4.209 13 C -0.192 4.192 14 C -0.131 4.131 15 C -0.091 4.091 16 C -0.244 4.244 17 C 0.059 3.941 18 C -0.551 4.551 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.421 5.421 22 Si 0.931 3.069 23 H -0.190 1.190 24 H -0.189 1.189 25 H -0.185 1.185 26 H 0.132 0.868 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.136 0.864 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.138 0.862 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.128 0.872 40 H 0.106 0.894 41 H 0.138 0.862 42 H 0.118 0.882 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.342 8.167 -3.855 11.035 hybrid contribution -1.834 0.062 0.459 1.891 sum -8.176 8.229 -3.396 12.087 Atomic orbital electron populations 1.23074 0.78619 1.04342 1.00752 1.85910 1.21395 1.27734 1.90353 1.19125 0.92119 0.83969 1.10244 1.20899 0.98126 0.91343 1.05438 1.18183 0.92578 0.91560 1.18277 1.21301 0.85908 0.90330 0.92398 1.22038 1.06789 1.02009 1.00825 1.21238 0.77095 0.86006 0.87165 1.90538 1.39009 1.76161 1.35636 1.22240 1.05846 0.98187 0.92587 1.20616 0.93681 0.95505 0.95099 1.22012 0.98537 0.98752 1.01630 1.21817 1.03249 0.98126 0.96050 1.21190 0.98916 0.97491 0.95458 1.20536 0.92343 0.97397 0.98870 1.20523 0.98492 0.91805 1.13552 1.17538 0.89343 0.94375 0.92835 1.20649 1.00781 0.97334 1.36380 0.91266 1.28483 1.00355 1.00160 0.92142 1.70474 1.39480 1.14750 1.17397 0.83030 0.73232 0.73345 0.77247 1.19025 1.18909 1.18523 0.86800 0.93450 0.93066 0.86391 0.88316 0.87785 0.86248 0.91011 0.91609 0.94595 0.91041 0.91693 0.91021 0.87192 0.89418 0.86187 0.88190 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 9.81 113.37 1.11 2.00 16 2 O -0.34 -15.54 9.77 -89.60 -0.88 -16.42 16 3 C -0.01 -0.50 6.71 23.01 0.15 -0.35 16 4 C -0.14 -5.89 8.68 22.65 0.20 -5.70 16 5 C -0.20 -8.09 5.26 -20.04 -0.11 -8.19 16 6 C 0.10 3.20 4.52 -18.43 -0.08 3.11 16 7 C -0.30 -9.91 8.39 22.16 0.19 -9.72 16 8 C 0.40 12.20 6.08 26.24 0.16 12.36 16 9 O -0.53 -20.03 17.82 -3.65 -0.06 -20.09 16 10 C -0.15 -3.12 4.87 29.91 0.15 -2.97 16 11 C -0.05 -0.92 0.78 -51.98 -0.04 -0.96 16 12 C -0.15 -3.15 8.10 71.98 0.58 -2.57 16 13 C -0.14 -1.76 8.50 71.98 0.61 -1.15 16 14 C -0.09 -2.18 4.67 29.94 0.14 -2.04 16 15 C -0.07 -3.08 9.67 22.31 0.22 -2.86 16 16 C -0.22 -10.99 7.86 22.43 0.18 -10.82 16 17 C 0.06 3.28 5.31 -21.17 -0.11 3.17 16 18 C -0.52 -28.18 8.63 23.34 0.20 -27.98 16 19 H 0.07 3.79 7.71 -2.91 -0.02 3.77 16 20 C 0.01 0.34 4.93 85.41 0.42 0.76 16 21 N -0.80 -41.18 12.29 21.91 0.27 -40.91 16 22 Si 1.11 42.12 30.01 68.60 2.06 44.17 16 23 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 24 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 25 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 26 H 0.11 2.97 8.14 -2.39 -0.02 2.96 16 27 H 0.05 1.47 7.66 -2.39 -0.02 1.45 16 28 H 0.05 1.55 7.66 -2.38 -0.02 1.53 16 29 H 0.12 4.47 6.29 -2.91 -0.02 4.45 16 30 H 0.10 3.76 8.04 -2.91 -0.02 3.74 16 31 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.03 0.91 6.12 -2.38 -0.01 0.90 16 36 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.06 0.83 8.14 -2.38 -0.02 0.82 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.09 2.10 8.10 -2.39 -0.02 2.08 16 41 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 42 H 0.10 5.09 6.47 -2.91 -0.02 5.07 16 43 H 0.29 15.33 6.69 -92.71 -0.62 14.71 16 Total: -1.00 -64.19 350.07 6.50 -57.69 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 1.15 Total: 29.47 kcal Atomic # 6 Polarization: -57.86 SS G_CDS: 3.96 Total: -53.90 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.27 Total: -40.91 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -0.94 Total: -36.51 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.06 Total: 44.17 kcal Total: -64.19 6.50 -57.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242315458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.331 kcal (2) G-P(sol) polarization free energy of solvation -64.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds