Wall clock time and date at job start Fri Apr 10 2020 20:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35456 * 117.00246 * 2 1 4 4 C 1.38713 * 120.01869 * 359.72578 * 3 2 1 5 5 C 1.37755 * 120.38427 * 180.25659 * 4 3 2 6 6 C 1.40529 * 120.42116 * 0.03913 * 5 4 3 7 7 C 1.46850 * 119.98818 * 179.97438 * 6 5 4 8 8 C 1.35024 * 119.42000 * 244.98241 * 7 6 5 9 9 C 1.40517 * 121.60611 * 180.22208 * 8 7 6 10 10 O 1.21457 * 119.74435 * 180.23681 * 9 8 7 11 11 C 1.50708 * 120.51468 * 0.21215 * 9 8 7 12 12 C 1.53199 * 109.07108 * 28.80655 * 11 9 8 13 13 C 1.53005 * 109.56566 * 62.96886 * 12 11 9 14 14 C 1.52995 * 109.56973 * 183.32890 * 12 11 9 15 15 C 1.50538 * 119.41524 * 64.70207 * 7 6 5 16 16 C 1.39392 * 120.03145 * 359.95866 * 6 5 4 17 17 C 1.40305 * 119.61778 * 0.02562 * 16 6 5 18 18 C 1.41233 * 120.20632 * 179.97438 * 17 16 6 19 19 H 1.07993 * 120.00405 * 204.74185 * 18 17 16 20 20 C 1.39911 * 119.99512 * 24.74575 * 18 17 16 21 21 N 1.30880 * 120.00353 * 17.75316 * 20 18 17 22 22 Si 1.86805 * 119.99895 * 197.75743 * 20 18 17 23 23 H 1.48501 * 109.47143 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47290 * 119.99465 * 22 20 18 25 25 H 1.48494 * 109.47086 * 240.00125 * 22 20 18 26 26 H 1.08996 * 109.47219 * 299.99488 * 1 2 3 27 27 H 1.09001 * 109.46924 * 60.00158 * 1 2 3 28 28 H 1.09005 * 109.46808 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.81273 * 0.27273 * 4 3 2 30 30 H 1.07996 * 119.79305 * 180.02562 * 5 4 3 31 31 H 1.08002 * 119.20229 * 0.24666 * 8 7 6 32 32 H 1.08998 * 109.53737 * 148.68241 * 11 9 8 33 33 H 1.08998 * 109.53921 * 268.84804 * 11 9 8 34 34 H 1.08997 * 109.47371 * 59.99999 * 13 12 11 35 35 H 1.08999 * 109.46396 * 179.97438 * 13 12 11 36 36 H 1.08999 * 109.47378 * 299.99382 * 13 12 11 37 37 H 1.09005 * 109.47110 * 59.99758 * 14 12 11 38 38 H 1.09000 * 109.47421 * 180.02562 * 14 12 11 39 39 H 1.09000 * 109.47322 * 300.00613 * 14 12 11 40 40 H 1.08997 * 109.46876 * 270.25414 * 15 7 6 41 41 H 1.09004 * 109.46745 * 30.24640 * 15 7 6 42 42 H 1.07996 * 120.18744 * 179.97438 * 16 6 5 43 43 H 0.97000 * 119.99567 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2069 0.0000 4 6 1.2889 2.3705 -0.0057 5 6 1.9065 3.6018 -0.0111 6 6 3.3088 3.6946 -0.0117 7 6 3.9572 5.0121 -0.0180 8 6 4.6963 5.3825 -1.0856 9 6 5.3404 6.6302 -1.1381 10 8 5.9934 6.9305 -2.1173 11 6 5.2269 7.5990 0.0107 12 6 5.0255 6.8131 1.3102 13 6 6.2528 5.9390 1.5759 14 6 4.8259 7.7875 2.4727 15 6 3.7810 5.9285 1.1633 16 6 4.0845 2.5365 -0.0059 17 6 3.4570 1.2816 -0.0001 18 6 4.2309 0.1002 0.0053 19 1 3.8163 -0.8188 -0.3819 20 6 5.5347 0.1204 0.5123 21 7 5.9214 1.1036 1.2848 22 14 6.7239 -1.2560 0.0866 23 1 6.0467 -2.2399 -0.7958 24 1 7.9041 -0.6910 -0.6155 25 1 7.1657 -1.9315 1.3329 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2106 2.3109 -0.0058 30 1 1.3094 4.5017 -0.0151 31 1 4.7945 4.7034 -1.9196 32 1 6.1398 8.1905 0.0802 33 1 4.3758 8.2601 -0.1526 34 1 7.1361 6.5710 1.6677 35 1 6.1080 5.3810 2.5009 36 1 6.3889 5.2425 0.7485 37 1 3.9479 8.4050 2.2827 38 1 4.6832 7.2268 3.3965 39 1 5.7048 8.4253 2.5673 40 1 2.9023 6.5547 1.0093 41 1 3.6498 5.3344 2.0676 42 1 5.1623 2.6048 -0.0067 43 1 6.8255 1.1177 1.6359 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242315735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:29 Heat of formation + Delta-G solvation = -58.788922 kcal Electronic energy + Delta-G solvation = -24516.322251 eV Core-core repulsion = 21105.128261 eV Total energy + Delta-G solvation = -3411.193991 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.17493 -38.72994 -37.30811 -36.22198 -34.02658 -32.72861 -30.04158 -29.31953 -27.96589 -27.23300 -26.72405 -26.55491 -25.17041 -22.42688 -21.12458 -20.22128 -19.43792 -17.50291 -16.90958 -16.54505 -15.80846 -15.53720 -15.20352 -14.78108 -14.69235 -14.59342 -14.15423 -13.94521 -13.62770 -13.15081 -12.88294 -12.82906 -12.59951 -12.23332 -12.11137 -11.84111 -11.74476 -11.54672 -11.37608 -11.30531 -11.17298 -11.00533 -10.85491 -10.70802 -10.54442 -10.48544 -10.05856 -9.89889 -9.63189 -9.23649 -9.14329 -8.60325 -7.64344 -7.03858 -6.76592 -4.32757 1.25750 2.59973 2.74702 3.08025 3.11438 3.14753 3.41726 3.92854 4.39879 4.47489 4.55844 4.64241 4.86424 4.99364 5.29254 5.40938 5.47852 5.50418 5.61067 5.64646 5.68094 5.74248 5.76086 5.80483 5.88773 5.91421 5.98122 6.03884 6.13117 6.15651 6.21848 6.27055 6.50800 6.54021 6.60428 6.73454 6.91306 7.02186 7.18235 7.23125 7.52722 7.58150 7.79968 7.99489 8.05817 8.28365 8.59488 8.75430 8.94909 10.13767 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.012522 B = 0.005296 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.577041 B = 5285.932067 C = 6517.930501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.023 3.977 4 C -0.179 4.179 5 C -0.187 4.187 6 C -0.101 4.101 7 C 0.078 3.922 8 C -0.278 4.278 9 C 0.397 3.603 10 O -0.489 6.489 11 C -0.159 4.159 12 C -0.058 4.058 13 C -0.149 4.149 14 C -0.139 4.139 15 C -0.091 4.091 16 C -0.115 4.115 17 C 0.094 3.906 18 C -0.443 4.443 19 H 0.084 0.916 20 C 0.074 3.926 21 N -0.794 5.794 22 Si 0.907 3.093 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.275 1.275 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.129 0.871 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.130 0.870 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.542 7.805 3.076 9.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.225 6.225 3 C -0.022 4.022 4 C -0.198 4.198 5 C -0.206 4.206 6 C -0.102 4.102 7 C 0.077 3.923 8 C -0.297 4.297 9 C 0.281 3.719 10 O -0.369 6.369 11 C -0.197 4.197 12 C -0.058 4.058 13 C -0.206 4.206 14 C -0.196 4.196 15 C -0.128 4.128 16 C -0.135 4.135 17 C 0.091 3.909 18 C -0.473 4.473 19 H 0.102 0.898 20 C -0.144 4.144 21 N -0.420 5.420 22 Si 0.732 3.268 23 H -0.183 1.183 24 H -0.197 1.197 25 H -0.200 1.200 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.147 0.853 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.148 0.852 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.911 7.836 2.728 8.793 hybrid contribution 0.143 -0.517 -0.016 0.537 sum -2.769 7.318 2.712 8.281 Atomic orbital electron populations 1.22759 0.81569 1.01879 0.99994 1.85931 1.18364 1.28278 1.89887 1.19409 0.92361 0.82669 1.07756 1.20509 0.97515 0.92683 1.09126 1.20060 0.92287 0.95495 1.12786 1.18604 0.93184 0.91140 1.07260 1.21404 0.87059 0.92215 0.91593 1.22023 1.06550 0.99542 1.01575 1.20814 0.77117 0.87505 0.86477 1.90540 1.35068 1.77757 1.33570 1.22233 1.04119 0.98745 0.94571 1.20648 0.95787 0.95119 0.94213 1.21968 0.96020 0.99467 1.03142 1.21838 1.01600 0.98595 0.97581 1.21009 0.97490 0.96748 0.97515 1.21293 0.99316 0.89141 1.03733 1.16958 0.87303 0.93904 0.92732 1.19459 0.96575 0.96452 1.34768 0.89776 1.25887 0.98837 0.96983 0.92652 1.69815 1.19076 1.30662 1.22423 0.86262 0.79992 0.81259 0.79317 1.18309 1.19671 1.19997 0.94056 0.94129 0.89937 0.88267 0.88885 0.85345 0.89316 0.88705 0.92822 0.91751 0.91686 0.92540 0.92051 0.92453 0.89506 0.89220 0.85196 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.80 101.05 0.99 1.54 16 2 O -0.31 -6.93 9.75 -18.06 -0.18 -7.11 16 3 C 0.02 0.54 6.73 -38.16 -0.26 0.28 16 4 C -0.18 -3.78 9.00 -39.58 -0.36 -4.14 16 5 C -0.19 -3.81 9.75 -38.90 -0.38 -4.19 16 6 C -0.10 -2.15 5.24 -105.12 -0.55 -2.70 16 7 C 0.08 1.39 4.53 -102.36 -0.46 0.93 16 8 C -0.28 -5.09 8.38 -39.87 -0.33 -5.43 16 9 C 0.40 6.82 6.08 -33.45 -0.20 6.61 16 10 O -0.49 -9.87 17.82 5.40 0.10 -9.77 16 11 C -0.16 -2.07 4.88 -27.78 -0.14 -2.21 16 12 C -0.06 -0.72 0.78 -154.20 -0.12 -0.84 16 13 C -0.15 -2.09 8.10 37.16 0.30 -1.79 16 14 C -0.14 -1.37 8.50 37.16 0.32 -1.05 16 15 C -0.09 -1.29 4.67 -27.76 -0.13 -1.42 16 16 C -0.12 -2.80 8.34 -38.38 -0.32 -3.12 16 17 C 0.09 2.42 5.58 -106.74 -0.60 1.82 16 18 C -0.44 -11.59 8.71 -37.82 -0.33 -11.92 16 19 H 0.08 2.21 7.64 -52.49 -0.40 1.81 16 20 C 0.07 1.81 5.14 -17.33 -0.09 1.72 16 21 N -0.79 -19.70 10.97 55.55 0.61 -19.09 16 22 Si 0.91 18.63 29.60 -169.99 -5.03 13.60 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 H 0.04 0.62 7.66 -51.93 -0.40 0.23 16 27 H 0.04 0.61 7.64 -51.93 -0.40 0.21 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.10 1.81 6.26 -52.49 -0.33 1.48 16 30 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.13 2.56 8.04 -52.49 -0.42 2.14 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.08 6.12 -51.93 -0.32 0.77 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.33 8.10 -51.93 -0.42 0.91 16 42 H 0.13 3.31 6.17 -52.49 -0.32 2.99 16 43 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -28.47 350.93 -8.24 -36.71 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.37 Total: 6.28 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: -2.66 Total: -25.92 kcal Atomic # 7 Polarization: -19.70 SS G_CDS: 0.61 Total: -19.09 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.08 Total: -16.87 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.47 -8.24 -36.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242315735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.081 kcal (2) G-P(sol) polarization free energy of solvation -28.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds