Wall clock time and date at job start Fri Apr 10 2020 20:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35456 * 117.00246 * 2 1 4 4 C 1.38713 * 120.01869 * 359.72578 * 3 2 1 5 5 C 1.37755 * 120.38427 * 180.25659 * 4 3 2 6 6 C 1.40529 * 120.42116 * 0.03913 * 5 4 3 7 7 C 1.46850 * 119.98818 * 179.97438 * 6 5 4 8 8 C 1.35024 * 119.42000 * 244.98241 * 7 6 5 9 9 C 1.40517 * 121.60611 * 180.22208 * 8 7 6 10 10 O 1.21457 * 119.74435 * 180.23681 * 9 8 7 11 11 C 1.50708 * 120.51468 * 0.21215 * 9 8 7 12 12 C 1.53199 * 109.07108 * 28.80655 * 11 9 8 13 13 C 1.53005 * 109.56566 * 62.96886 * 12 11 9 14 14 C 1.52995 * 109.56973 * 183.32890 * 12 11 9 15 15 C 1.50538 * 119.41524 * 64.70207 * 7 6 5 16 16 C 1.39392 * 120.03145 * 359.95866 * 6 5 4 17 17 C 1.40305 * 119.61778 * 0.02562 * 16 6 5 18 18 C 1.41233 * 120.20632 * 179.97438 * 17 16 6 19 19 H 1.07993 * 120.00405 * 204.74185 * 18 17 16 20 20 C 1.39911 * 119.99512 * 24.74575 * 18 17 16 21 21 N 1.30880 * 120.00353 * 17.75316 * 20 18 17 22 22 Si 1.86805 * 119.99895 * 197.75743 * 20 18 17 23 23 H 1.48501 * 109.47143 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47290 * 119.99465 * 22 20 18 25 25 H 1.48494 * 109.47086 * 240.00125 * 22 20 18 26 26 H 1.08996 * 109.47219 * 299.99488 * 1 2 3 27 27 H 1.09001 * 109.46924 * 60.00158 * 1 2 3 28 28 H 1.09005 * 109.46808 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.81273 * 0.27273 * 4 3 2 30 30 H 1.07996 * 119.79305 * 180.02562 * 5 4 3 31 31 H 1.08002 * 119.20229 * 0.24666 * 8 7 6 32 32 H 1.08998 * 109.53737 * 148.68241 * 11 9 8 33 33 H 1.08998 * 109.53921 * 268.84804 * 11 9 8 34 34 H 1.08997 * 109.47371 * 59.99999 * 13 12 11 35 35 H 1.08999 * 109.46396 * 179.97438 * 13 12 11 36 36 H 1.08999 * 109.47378 * 299.99382 * 13 12 11 37 37 H 1.09005 * 109.47110 * 59.99758 * 14 12 11 38 38 H 1.09000 * 109.47421 * 180.02562 * 14 12 11 39 39 H 1.09000 * 109.47322 * 300.00613 * 14 12 11 40 40 H 1.08997 * 109.46876 * 270.25414 * 15 7 6 41 41 H 1.09004 * 109.46745 * 30.24640 * 15 7 6 42 42 H 1.07996 * 120.18744 * 179.97438 * 16 6 5 43 43 H 0.97000 * 119.99567 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2069 0.0000 4 6 1.2889 2.3705 -0.0057 5 6 1.9065 3.6018 -0.0111 6 6 3.3088 3.6946 -0.0117 7 6 3.9572 5.0121 -0.0180 8 6 4.6963 5.3825 -1.0856 9 6 5.3404 6.6302 -1.1381 10 8 5.9934 6.9305 -2.1173 11 6 5.2269 7.5990 0.0107 12 6 5.0255 6.8131 1.3102 13 6 6.2528 5.9390 1.5759 14 6 4.8259 7.7875 2.4727 15 6 3.7810 5.9285 1.1633 16 6 4.0845 2.5365 -0.0059 17 6 3.4570 1.2816 -0.0001 18 6 4.2309 0.1002 0.0053 19 1 3.8163 -0.8188 -0.3819 20 6 5.5347 0.1204 0.5123 21 7 5.9214 1.1036 1.2848 22 14 6.7239 -1.2560 0.0866 23 1 6.0467 -2.2399 -0.7958 24 1 7.9041 -0.6910 -0.6155 25 1 7.1657 -1.9315 1.3329 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2106 2.3109 -0.0058 30 1 1.3094 4.5017 -0.0151 31 1 4.7945 4.7034 -1.9196 32 1 6.1398 8.1905 0.0802 33 1 4.3758 8.2601 -0.1526 34 1 7.1361 6.5710 1.6677 35 1 6.1080 5.3810 2.5009 36 1 6.3889 5.2425 0.7485 37 1 3.9479 8.4050 2.2827 38 1 4.6832 7.2268 3.3965 39 1 5.7048 8.4253 2.5673 40 1 2.9023 6.5547 1.0093 41 1 3.6498 5.3344 2.0676 42 1 5.1623 2.6048 -0.0067 43 1 6.8255 1.1177 1.6359 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242315735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:28 Heat of formation + Delta-G solvation = -72.971637 kcal Electronic energy + Delta-G solvation = -24516.937260 eV Core-core repulsion = 21105.128261 eV Total energy + Delta-G solvation = -3411.808999 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.48380 -40.40018 -38.70971 -37.76555 -35.74847 -34.19685 -31.79882 -30.73568 -29.38554 -28.34782 -28.04082 -27.69581 -26.93779 -23.91472 -22.87650 -21.62803 -20.79385 -19.24156 -18.36024 -18.03580 -17.38086 -17.01800 -16.57376 -16.35743 -16.21148 -15.98413 -15.48257 -15.20858 -14.91494 -14.70053 -14.51525 -14.22958 -14.11015 -13.53319 -13.32787 -13.15049 -13.00831 -12.90174 -12.81434 -12.71256 -12.63857 -12.50426 -12.15797 -12.07378 -11.98091 -11.71317 -11.52900 -11.40558 -11.29822 -11.04612 -10.51370 -10.06984 -9.46101 -8.80595 -8.55179 -6.24430 -0.17359 0.87877 0.97649 1.35656 1.44984 1.49732 2.02696 2.20229 2.66723 2.89737 3.34767 3.53211 3.56206 3.80842 3.87069 4.00775 4.26222 4.32852 4.35708 4.41318 4.49941 4.56819 4.57874 4.67175 4.72786 4.75730 4.89249 4.89926 4.93118 4.97595 5.12090 5.14522 5.16734 5.21112 5.27863 5.35349 5.39364 5.43959 5.50283 5.60307 5.78809 5.80642 6.00859 6.26482 6.44269 6.64476 6.76218 6.89098 7.19310 8.33422 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.012522 B = 0.005296 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.577041 B = 5285.932067 C = 6517.930501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.340 6.340 3 C 0.011 3.989 4 C -0.181 4.181 5 C -0.173 4.173 6 C -0.108 4.108 7 C 0.087 3.913 8 C -0.292 4.292 9 C 0.399 3.601 10 O -0.528 6.528 11 C -0.148 4.148 12 C -0.049 4.049 13 C -0.151 4.151 14 C -0.133 4.133 15 C -0.089 4.089 16 C -0.135 4.135 17 C 0.054 3.946 18 C -0.483 4.483 19 H 0.068 0.932 20 C 0.036 3.964 21 N -0.822 5.822 22 Si 0.972 3.028 23 H -0.262 1.262 24 H -0.267 1.267 25 H -0.263 1.263 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.110 0.890 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.128 0.872 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.027 0.973 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.122 0.878 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.254 10.216 4.365 12.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.255 6.255 3 C -0.034 4.034 4 C -0.200 4.200 5 C -0.192 4.192 6 C -0.108 4.108 7 C 0.086 3.914 8 C -0.311 4.311 9 C 0.285 3.715 10 O -0.412 6.412 11 C -0.185 4.185 12 C -0.049 4.049 13 C -0.208 4.208 14 C -0.190 4.190 15 C -0.125 4.125 16 C -0.155 4.155 17 C 0.052 3.948 18 C -0.513 4.513 19 H 0.086 0.914 20 C -0.178 4.178 21 N -0.449 5.449 22 Si 0.793 3.207 23 H -0.186 1.186 24 H -0.192 1.192 25 H -0.188 1.188 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.128 0.872 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.146 0.854 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.046 0.954 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.140 0.860 41 H 0.103 0.897 42 H 0.124 0.876 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.653 10.248 4.032 11.955 hybrid contribution 0.486 -1.268 -0.449 1.430 sum -4.167 8.980 3.583 10.528 Atomic orbital electron populations 1.23121 0.78378 1.04285 1.01208 1.85880 1.21736 1.28043 1.89843 1.19607 0.92145 0.84185 1.07476 1.20901 0.99234 0.91892 1.07952 1.20566 0.92056 0.96837 1.09779 1.18922 0.93980 0.91815 1.06076 1.21540 0.85913 0.91280 0.92710 1.21966 1.07595 1.00340 1.01244 1.21273 0.75570 0.87440 0.87218 1.90525 1.36783 1.78375 1.35494 1.22238 1.06271 0.97831 0.92206 1.20625 0.93847 0.95050 0.95393 1.21989 0.98050 0.99431 1.01342 1.21802 1.03292 0.98043 0.95856 1.21146 0.99753 0.96565 0.95049 1.21150 0.98543 0.90255 1.05554 1.17336 0.88995 0.94345 0.94120 1.19517 0.98244 0.96334 1.37237 0.91398 1.26577 0.99762 0.99311 0.92140 1.69857 1.19644 1.32170 1.23222 0.85305 0.77717 0.78399 0.79261 1.18608 1.19177 1.18780 0.92720 0.92710 0.87207 0.84790 0.85016 0.88678 0.87826 0.85409 0.91136 0.92219 0.95385 0.90328 0.91866 0.91136 0.86001 0.89658 0.87647 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.76 9.80 113.37 1.11 1.87 16 2 O -0.34 -15.36 9.75 -87.53 -0.85 -16.22 16 3 C 0.01 0.52 6.73 23.19 0.16 0.68 16 4 C -0.18 -7.35 9.00 22.27 0.20 -7.15 16 5 C -0.17 -6.73 9.75 22.71 0.22 -6.50 16 6 C -0.11 -4.60 5.24 -20.19 -0.11 -4.71 16 7 C 0.09 3.04 4.53 -18.40 -0.08 2.96 16 8 C -0.29 -11.00 8.38 22.09 0.19 -10.81 16 9 C 0.40 13.53 6.08 26.24 0.16 13.68 16 10 O -0.53 -21.63 17.82 -3.58 -0.06 -21.70 16 11 C -0.15 -3.38 4.88 29.92 0.15 -3.24 16 12 C -0.05 -1.08 0.78 -51.98 -0.04 -1.12 16 13 C -0.15 -4.12 8.10 71.98 0.58 -3.54 16 14 C -0.13 -1.97 8.50 71.98 0.61 -1.36 16 15 C -0.09 -2.26 4.67 29.93 0.14 -2.12 16 16 C -0.14 -6.95 8.34 23.05 0.19 -6.76 16 17 C 0.05 2.96 5.58 -21.24 -0.12 2.84 16 18 C -0.48 -27.00 8.71 23.41 0.20 -26.79 16 19 H 0.07 3.84 7.64 -2.91 -0.02 3.81 16 20 C 0.04 1.88 5.14 85.24 0.44 2.32 16 21 N -0.82 -43.17 10.97 21.82 0.24 -42.93 16 22 Si 0.97 40.09 29.60 68.60 2.03 42.12 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 24 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 25 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 26 H 0.05 1.52 7.66 -2.39 -0.02 1.50 16 27 H 0.05 1.51 7.64 -2.39 -0.02 1.49 16 28 H 0.11 2.70 8.14 -2.38 -0.02 2.68 16 29 H 0.13 4.42 6.26 -2.91 -0.02 4.41 16 30 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 31 H 0.09 4.12 8.04 -2.91 -0.02 4.10 16 32 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.03 0.95 6.12 -2.39 -0.01 0.94 16 37 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.12 2.33 8.14 -2.39 -0.02 2.32 16 41 H 0.08 2.31 8.10 -2.39 -0.02 2.29 16 42 H 0.11 5.84 6.17 -2.91 -0.02 5.82 16 43 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 Total: -1.00 -67.89 350.93 6.35 -61.54 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 1.00 Total: 26.94 kcal Atomic # 6 Polarization: -53.75 SS G_CDS: 4.00 Total: -49.75 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.24 Total: -42.93 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -0.92 Total: -37.91 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Total: -67.89 6.35 -61.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242315735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.432 kcal (2) G-P(sol) polarization free energy of solvation -67.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds