Wall clock time and date at job start Fri Apr 10 2020 20:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.57237 * 2 1 4 4 C 1.53196 * 109.57195 * 120.24035 * 2 1 3 5 5 C 1.50706 * 109.07769 * 62.96197 * 4 2 1 6 6 O 1.21469 * 119.73855 * 208.54155 * 5 4 2 7 7 C 1.40446 * 120.52073 * 28.81758 * 5 4 2 8 8 C 1.35082 * 121.60743 * 0.21131 * 7 5 4 9 9 C 1.46786 * 119.41975 * 180.23715 * 8 7 5 10 10 C 1.40087 * 120.12202 * 244.72180 * 9 8 7 11 11 C 1.37607 * 119.87171 * 179.79258 * 10 9 8 12 12 C 1.39066 * 120.12293 * 0.48798 * 11 10 9 13 13 O 1.35712 * 119.87494 * 179.72629 * 12 11 10 14 14 C 1.42898 * 117.00030 * 0.02562 * 13 12 11 15 15 C 1.50707 * 109.46996 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99907 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99648 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00377 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99551 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46934 * 60.00097 * 19 17 15 21 21 H 1.48500 * 109.46852 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47148 * 299.99880 * 19 17 15 23 23 C 1.39065 * 120.24564 * 359.74169 * 12 11 10 24 24 C 1.37603 * 120.12423 * 0.02562 * 23 12 11 25 25 C 1.50530 * 121.15759 * 0.23899 * 8 7 5 26 26 H 1.09003 * 109.47093 * 299.75787 * 1 2 3 27 27 H 1.08995 * 109.47258 * 59.75659 * 1 2 3 28 28 H 1.09003 * 109.46840 * 179.76064 * 1 2 3 29 29 H 1.08997 * 109.47542 * 180.24185 * 3 2 1 30 30 H 1.09001 * 109.46714 * 300.24228 * 3 2 1 31 31 H 1.09002 * 109.47166 * 60.23851 * 3 2 1 32 32 H 1.09004 * 109.53759 * 303.08438 * 4 2 1 33 33 H 1.08997 * 109.53846 * 182.84317 * 4 2 1 34 34 H 1.07997 * 119.19172 * 180.18337 * 7 5 4 35 35 H 1.07996 * 120.06166 * 359.97438 * 10 9 8 36 36 H 1.07999 * 119.93520 * 180.21017 * 11 10 9 37 37 H 1.09004 * 109.47124 * 300.00248 * 14 13 12 38 38 H 1.08997 * 109.47217 * 60.00685 * 14 13 12 39 39 H 0.96999 * 120.00297 * 180.02562 * 18 17 15 40 40 H 1.08007 * 119.93632 * 180.02562 * 23 12 11 41 41 H 1.08004 * 120.06566 * 179.97438 * 24 23 12 42 42 H 1.08999 * 109.46882 * 210.23106 * 25 8 7 43 43 H 1.09002 * 109.46545 * 90.24467 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0425 1.4416 0.0000 4 6 2.0432 -0.7270 1.2470 5 6 1.5981 -2.1659 1.1965 6 8 1.4203 -2.7783 2.2303 7 6 1.3929 -2.8061 -0.0367 8 6 1.5888 -2.1641 -1.2089 9 6 1.3549 -2.8782 -2.4699 10 6 2.4201 -3.1266 -3.3452 11 6 2.1957 -3.8002 -4.5240 12 6 0.9128 -4.2251 -4.8517 13 8 0.6962 -4.8841 -6.0181 14 6 1.8308 -5.1061 -6.8581 15 6 1.4002 -5.8455 -8.0987 16 1 0.3638 -6.1181 -8.2325 17 6 2.3295 -6.1738 -9.0629 18 7 3.5916 -5.8422 -8.8998 19 14 1.7960 -7.0909 -10.6004 20 1 0.7881 -6.2835 -11.3336 21 1 2.9752 -7.3226 -11.4728 22 1 1.2007 -8.3961 -10.2167 23 6 -0.1491 -3.9770 -3.9887 24 6 0.0645 -3.3085 -2.8051 25 6 2.0429 -0.7294 -1.2448 26 1 -0.3633 0.5101 0.8922 27 1 -0.3633 0.5176 -0.8877 28 1 -0.3633 -1.0277 -0.0043 29 1 3.1325 1.4397 -0.0043 30 1 1.6765 1.9573 -0.8878 31 1 1.6836 1.9548 0.8921 32 1 1.6369 -0.2510 2.1395 33 1 3.1319 -0.6828 1.2725 34 1 1.0711 -3.8370 -0.0478 35 1 3.4159 -2.7926 -3.0939 36 1 3.0168 -3.9952 -5.1979 37 1 2.2674 -4.1479 -7.1397 38 1 2.5708 -5.6986 -6.3201 39 1 4.2453 -6.0729 -9.5782 40 1 -1.1434 -4.3096 -4.2480 41 1 -0.7609 -3.1159 -2.1358 42 1 1.6477 -0.2455 -2.1380 43 1 3.1321 -0.6935 -1.2639 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242316752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:32 Heat of formation + Delta-G solvation = -59.064810 kcal Electronic energy + Delta-G solvation = -23337.708933 eV Core-core repulsion = 19926.502979 eV Total energy + Delta-G solvation = -3411.205954 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.74000 -39.42598 -37.80799 -36.81899 -33.68530 -32.91426 -30.89093 -29.95495 -28.62564 -27.71948 -27.37473 -27.16385 -23.72025 -23.08871 -21.70165 -20.83434 -20.09599 -17.64096 -17.38257 -16.62267 -16.50492 -15.94470 -15.37294 -15.12120 -14.83779 -14.73669 -14.59973 -14.41901 -14.18838 -13.89983 -13.37607 -13.22494 -12.88150 -12.65454 -12.52438 -12.34683 -12.09143 -12.05777 -11.86835 -11.67096 -11.37361 -11.14513 -11.07756 -11.04197 -10.85639 -10.67704 -10.25932 -10.21384 -9.66697 -9.39894 -9.24381 -8.80883 -8.64393 -7.54771 -6.31685 -4.36004 0.63157 1.63274 1.67287 2.85432 3.21767 3.25032 3.28030 3.96470 4.05659 4.08638 4.16889 4.40341 4.43428 4.50323 4.69585 4.93283 4.99008 5.05694 5.10130 5.14423 5.20455 5.22886 5.36537 5.37238 5.40062 5.54108 5.58361 5.66073 5.75076 5.76502 5.82966 5.91926 5.94316 5.99140 6.08323 6.23231 6.32262 6.55645 6.62668 6.67867 6.86456 7.04068 7.09059 7.50350 7.60278 7.86624 8.34685 8.75411 9.29618 10.79430 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.031555 B = 0.002574 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.127728 B =10874.876649 C =11052.143921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.058 4.058 3 C -0.141 4.141 4 C -0.161 4.161 5 C 0.394 3.606 6 O -0.476 6.476 7 C -0.258 4.258 8 C 0.057 3.943 9 C -0.151 4.151 10 C -0.053 4.053 11 C -0.214 4.214 12 C 0.168 3.832 13 O -0.313 6.313 14 C 0.192 3.808 15 C -0.527 4.527 16 H 0.071 0.929 17 C 0.061 3.939 18 N -0.894 5.894 19 Si 0.914 3.086 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.171 4.171 24 C -0.057 4.057 25 C -0.094 4.094 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.131 0.869 35 H 0.121 0.879 36 H 0.138 0.862 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.269 0.731 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.090 0.910 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.323 13.731 16.408 21.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.058 4.058 3 C -0.198 4.198 4 C -0.198 4.198 5 C 0.276 3.724 6 O -0.356 6.356 7 C -0.277 4.277 8 C 0.056 3.944 9 C -0.151 4.151 10 C -0.071 4.071 11 C -0.233 4.233 12 C 0.119 3.881 13 O -0.225 6.225 14 C 0.119 3.881 15 C -0.565 4.565 16 H 0.089 0.911 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.741 3.259 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.190 4.190 24 C -0.075 4.075 25 C -0.130 4.130 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.149 0.851 35 H 0.139 0.861 36 H 0.155 0.845 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.078 0.922 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.109 0.891 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.402 13.314 16.736 21.520 hybrid contribution 0.197 -0.510 -1.014 1.152 sum -2.205 12.804 15.722 20.396 Atomic orbital electron populations 1.22001 0.93820 1.02656 1.02308 1.20595 0.96399 0.95560 0.93232 1.21850 1.01200 0.94378 1.02392 1.22252 1.03039 0.94855 0.99666 1.20821 0.73226 0.89487 0.88853 1.90590 1.40562 1.67336 1.37096 1.22162 1.10413 1.02271 0.92871 1.21215 0.87094 0.93755 0.92291 1.18624 0.94424 1.06495 0.95599 1.20924 0.97664 0.96195 0.92335 1.21405 0.97310 1.04992 0.99553 1.19533 0.92868 0.89009 0.86713 1.86099 1.40578 1.68606 1.27209 1.20706 0.82565 0.96718 0.88065 1.20930 0.96042 1.37423 1.02129 0.91129 1.24933 0.94576 0.95804 0.98800 1.69927 1.01531 1.46197 1.35554 0.86290 0.78094 0.80111 0.81443 1.19801 1.20940 1.19804 1.20349 0.98535 1.05174 0.94899 1.20899 0.95328 0.95688 0.95555 1.20995 1.01777 0.91295 0.98965 0.92314 0.91859 0.92143 0.92237 0.91952 0.92187 0.88918 0.88267 0.85077 0.86099 0.84468 0.95894 0.95888 0.92185 0.85257 0.85846 0.89136 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.09 37.16 0.30 -0.85 16 2 C -0.06 -0.41 0.78 -154.35 -0.12 -0.53 16 3 C -0.14 -0.78 8.50 37.16 0.32 -0.47 16 4 C -0.16 -1.32 4.88 -27.78 -0.14 -1.46 16 5 C 0.39 4.61 6.08 -33.47 -0.20 4.41 16 6 O -0.48 -7.30 17.82 5.39 0.10 -7.20 16 7 C -0.26 -2.99 8.39 -39.87 -0.33 -3.32 16 8 C 0.06 0.61 4.55 -102.37 -0.47 0.14 16 9 C -0.15 -1.96 5.24 -105.05 -0.55 -2.51 16 10 C -0.05 -0.75 9.76 -39.12 -0.38 -1.14 16 11 C -0.21 -3.76 9.01 -39.50 -0.36 -4.12 16 12 C 0.17 3.23 6.70 -38.97 -0.26 2.97 16 13 O -0.31 -7.29 10.11 -18.84 -0.19 -7.48 16 14 C 0.19 4.93 4.49 36.01 0.16 5.09 16 15 C -0.53 -14.71 9.43 -34.44 -0.32 -15.04 16 16 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 19 Si 0.91 20.86 29.54 -169.99 -5.02 15.83 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 C -0.17 -2.74 9.96 -39.51 -0.39 -3.14 16 24 C -0.06 -0.76 9.71 -39.12 -0.38 -1.14 16 25 C -0.09 -0.76 4.65 -27.91 -0.13 -0.89 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.54 6.12 -51.93 -0.32 0.22 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.13 1.65 8.04 -52.49 -0.42 1.23 16 35 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.14 2.56 6.27 -52.49 -0.33 2.23 16 37 H 0.02 0.61 7.65 -51.93 -0.40 0.21 16 38 H 0.02 0.61 7.65 -51.93 -0.40 0.22 16 39 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.13 1.92 8.06 -52.48 -0.42 1.49 16 41 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 42 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 357.02 15.07 5.38 5.38 Total: -1.00 -30.34 357.02 -8.84 -39.17 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -6.48 Total: -0.72 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -3.36 Total: -20.41 kcal Atomic # 7 Polarization: -25.32 SS G_CDS: 0.74 Total: -24.58 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.09 Total: -14.68 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.34 -8.84 -39.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242316752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.892 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds