Wall clock time and date at job start Fri Apr 10 2020 20:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.57237 * 2 1 4 4 C 1.53196 * 109.57195 * 120.24035 * 2 1 3 5 5 C 1.50706 * 109.07769 * 62.96197 * 4 2 1 6 6 O 1.21469 * 119.73855 * 208.54155 * 5 4 2 7 7 C 1.40446 * 120.52073 * 28.81758 * 5 4 2 8 8 C 1.35082 * 121.60743 * 0.21131 * 7 5 4 9 9 C 1.46786 * 119.41975 * 180.23715 * 8 7 5 10 10 C 1.40087 * 120.12202 * 244.72180 * 9 8 7 11 11 C 1.37607 * 119.87171 * 179.79258 * 10 9 8 12 12 C 1.39066 * 120.12293 * 0.48798 * 11 10 9 13 13 O 1.35712 * 119.87494 * 179.72629 * 12 11 10 14 14 C 1.42898 * 117.00030 * 0.02562 * 13 12 11 15 15 C 1.50707 * 109.46996 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99907 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99648 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00377 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99551 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46934 * 60.00097 * 19 17 15 21 21 H 1.48500 * 109.46852 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47148 * 299.99880 * 19 17 15 23 23 C 1.39065 * 120.24564 * 359.74169 * 12 11 10 24 24 C 1.37603 * 120.12423 * 0.02562 * 23 12 11 25 25 C 1.50530 * 121.15759 * 0.23899 * 8 7 5 26 26 H 1.09003 * 109.47093 * 299.75787 * 1 2 3 27 27 H 1.08995 * 109.47258 * 59.75659 * 1 2 3 28 28 H 1.09003 * 109.46840 * 179.76064 * 1 2 3 29 29 H 1.08997 * 109.47542 * 180.24185 * 3 2 1 30 30 H 1.09001 * 109.46714 * 300.24228 * 3 2 1 31 31 H 1.09002 * 109.47166 * 60.23851 * 3 2 1 32 32 H 1.09004 * 109.53759 * 303.08438 * 4 2 1 33 33 H 1.08997 * 109.53846 * 182.84317 * 4 2 1 34 34 H 1.07997 * 119.19172 * 180.18337 * 7 5 4 35 35 H 1.07996 * 120.06166 * 359.97438 * 10 9 8 36 36 H 1.07999 * 119.93520 * 180.21017 * 11 10 9 37 37 H 1.09004 * 109.47124 * 300.00248 * 14 13 12 38 38 H 1.08997 * 109.47217 * 60.00685 * 14 13 12 39 39 H 0.96999 * 120.00297 * 180.02562 * 18 17 15 40 40 H 1.08007 * 119.93632 * 180.02562 * 23 12 11 41 41 H 1.08004 * 120.06566 * 179.97438 * 24 23 12 42 42 H 1.08999 * 109.46882 * 210.23106 * 25 8 7 43 43 H 1.09002 * 109.46545 * 90.24467 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0425 1.4416 0.0000 4 6 2.0432 -0.7270 1.2470 5 6 1.5981 -2.1659 1.1965 6 8 1.4203 -2.7783 2.2303 7 6 1.3929 -2.8061 -0.0367 8 6 1.5888 -2.1641 -1.2089 9 6 1.3549 -2.8782 -2.4699 10 6 2.4201 -3.1266 -3.3452 11 6 2.1957 -3.8002 -4.5240 12 6 0.9128 -4.2251 -4.8517 13 8 0.6962 -4.8841 -6.0181 14 6 1.8308 -5.1061 -6.8581 15 6 1.4002 -5.8455 -8.0987 16 1 0.3638 -6.1181 -8.2325 17 6 2.3295 -6.1738 -9.0629 18 7 3.5916 -5.8422 -8.8998 19 14 1.7960 -7.0909 -10.6004 20 1 0.7881 -6.2835 -11.3336 21 1 2.9752 -7.3226 -11.4728 22 1 1.2007 -8.3961 -10.2167 23 6 -0.1491 -3.9770 -3.9887 24 6 0.0645 -3.3085 -2.8051 25 6 2.0429 -0.7294 -1.2448 26 1 -0.3633 0.5101 0.8922 27 1 -0.3633 0.5176 -0.8877 28 1 -0.3633 -1.0277 -0.0043 29 1 3.1325 1.4397 -0.0043 30 1 1.6765 1.9573 -0.8878 31 1 1.6836 1.9548 0.8921 32 1 1.6369 -0.2510 2.1395 33 1 3.1319 -0.6828 1.2725 34 1 1.0711 -3.8370 -0.0478 35 1 3.4159 -2.7926 -3.0939 36 1 3.0168 -3.9952 -5.1979 37 1 2.2674 -4.1479 -7.1397 38 1 2.5708 -5.6986 -6.3201 39 1 4.2453 -6.0729 -9.5782 40 1 -1.1434 -4.3096 -4.2480 41 1 -0.7609 -3.1159 -2.1358 42 1 1.6477 -0.2455 -2.1380 43 1 3.1321 -0.6935 -1.2639 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242316752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:31 Heat of formation + Delta-G solvation = -74.361344 kcal Electronic energy + Delta-G solvation = -23338.372240 eV Core-core repulsion = 19926.502979 eV Total energy + Delta-G solvation = -3411.869261 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.62860 -40.81457 -38.91534 -38.02262 -35.16810 -34.47256 -32.17446 -31.02689 -30.02483 -28.91487 -28.30246 -27.73726 -25.49153 -24.27428 -23.13395 -21.86583 -20.93970 -19.23805 -18.51788 -18.17662 -17.55835 -17.05198 -16.69094 -16.50111 -16.27891 -16.10356 -15.71063 -15.30768 -15.22856 -14.80500 -14.64934 -14.35680 -14.12250 -13.71624 -13.69945 -13.26024 -13.14419 -13.06010 -12.92858 -12.84549 -12.63300 -12.57242 -12.33567 -12.13868 -11.93294 -11.79239 -11.69424 -11.49633 -11.37942 -10.73111 -10.57215 -10.20734 -10.05060 -8.96195 -8.41209 -6.55566 -0.33683 0.36864 0.42476 1.38851 1.43010 1.51517 1.94884 2.25400 2.69427 2.70386 2.93803 3.26622 3.44558 3.69970 3.81162 3.87911 3.89229 3.94569 4.24285 4.28405 4.34558 4.44439 4.55843 4.62062 4.66162 4.72762 4.74006 4.85331 4.91467 4.94640 4.97065 5.02048 5.06302 5.13376 5.18832 5.24556 5.31332 5.38722 5.39593 5.41572 5.48824 5.51669 5.53571 5.79973 5.82959 6.47517 6.60912 6.75686 7.16509 8.70626 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.031555 B = 0.002574 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.127728 B =10874.876649 C =11052.143921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.050 4.050 3 C -0.138 4.138 4 C -0.156 4.156 5 C 0.396 3.604 6 O -0.522 6.522 7 C -0.267 4.267 8 C 0.074 3.926 9 C -0.133 4.133 10 C -0.049 4.049 11 C -0.226 4.226 12 C 0.121 3.879 13 O -0.336 6.336 14 C 0.212 3.788 15 C -0.561 4.561 16 H 0.066 0.934 17 C 0.013 3.987 18 N -0.924 5.924 19 Si 0.986 3.014 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.266 1.266 23 C -0.169 4.169 24 C -0.050 4.050 25 C -0.096 4.096 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.150 0.850 36 H 0.116 0.884 37 H 0.005 0.995 38 H 0.002 0.998 39 H 0.274 0.726 40 H 0.138 0.862 41 H 0.154 0.846 42 H 0.098 0.902 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.347 15.558 17.166 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.050 4.050 3 C -0.195 4.195 4 C -0.193 4.193 5 C 0.281 3.719 6 O -0.404 6.404 7 C -0.286 4.286 8 C 0.073 3.927 9 C -0.133 4.133 10 C -0.067 4.067 11 C -0.245 4.245 12 C 0.074 3.926 13 O -0.250 6.250 14 C 0.139 3.861 15 C -0.598 4.598 16 H 0.084 0.916 17 C -0.187 4.187 18 N -0.562 5.562 19 Si 0.808 3.192 20 H -0.188 1.188 21 H -0.198 1.198 22 H -0.190 1.190 23 C -0.188 4.188 24 C -0.068 4.068 25 C -0.132 4.132 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.168 0.832 36 H 0.134 0.866 37 H 0.023 0.977 38 H 0.020 0.980 39 H 0.083 0.917 40 H 0.156 0.844 41 H 0.172 0.828 42 H 0.116 0.884 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.431 15.167 17.512 23.294 hybrid contribution 0.193 -0.995 -1.076 1.478 sum -2.238 14.172 16.436 21.817 Atomic orbital electron populations 1.22046 0.94284 1.01783 1.03057 1.20559 0.95984 0.96458 0.91966 1.21830 1.01867 0.92808 1.03007 1.22279 1.04198 0.92144 1.00651 1.21271 0.71744 0.90933 0.87915 1.90582 1.42884 1.68673 1.38291 1.22085 1.11194 1.01854 0.93498 1.21238 0.86165 0.94950 0.90387 1.18922 0.93898 1.04641 0.95831 1.21169 0.99473 0.95046 0.90991 1.21349 0.96157 1.06203 1.00778 1.19937 0.94775 0.91341 0.86527 1.86010 1.39347 1.70632 1.28965 1.20204 0.82908 0.95115 0.87905 1.21301 0.96225 1.38668 1.03613 0.91554 1.25931 0.94439 0.96240 1.02040 1.70030 1.02619 1.46769 1.36803 0.85192 0.78137 0.78805 0.77076 1.18833 1.19780 1.19030 1.20548 0.98120 1.05028 0.95055 1.21240 0.96610 0.94230 0.94729 1.21141 1.03076 0.89093 0.99872 0.91669 0.91158 0.93778 0.91204 0.91481 0.91529 0.88185 0.86294 0.86697 0.83190 0.86607 0.97680 0.97975 0.91662 0.84381 0.82809 0.88366 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.09 71.98 0.58 -1.33 16 2 C -0.05 -0.53 0.78 -52.08 -0.04 -0.57 16 3 C -0.14 -0.96 8.50 71.98 0.61 -0.35 16 4 C -0.16 -2.08 4.88 29.92 0.15 -1.94 16 5 C 0.40 8.66 6.08 26.23 0.16 8.82 16 6 O -0.52 -15.79 17.82 -3.62 -0.06 -15.85 16 7 C -0.27 -5.75 8.39 22.08 0.19 -5.57 16 8 C 0.07 1.36 4.55 -18.41 -0.08 1.27 16 9 C -0.13 -3.18 5.24 -20.14 -0.11 -3.28 16 10 C -0.05 -1.34 9.76 22.57 0.22 -1.12 16 11 C -0.23 -8.25 9.01 22.32 0.20 -8.05 16 12 C 0.12 4.85 6.70 22.67 0.15 5.01 16 13 O -0.34 -16.61 10.11 -90.33 -0.91 -17.52 16 14 C 0.21 11.59 4.49 71.24 0.32 11.91 16 15 C -0.56 -32.50 9.43 25.60 0.24 -32.26 16 16 H 0.07 3.79 7.81 -2.91 -0.02 3.76 16 17 C 0.01 0.74 5.46 84.66 0.46 1.20 16 18 N -0.92 -53.52 13.29 21.45 0.28 -53.23 16 19 Si 0.99 42.90 29.54 68.60 2.03 44.93 16 20 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 C -0.17 -5.41 9.96 22.32 0.22 -5.19 16 24 C -0.05 -1.27 9.71 22.57 0.22 -1.05 16 25 C -0.10 -1.18 4.65 29.83 0.14 -1.04 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.04 0.69 6.12 -2.39 -0.01 0.67 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.11 2.83 8.04 -2.91 -0.02 2.81 16 35 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 36 H 0.12 4.67 6.27 -2.91 -0.02 4.65 16 37 H 0.01 0.31 7.65 -2.38 -0.02 0.29 16 38 H 0.00 0.14 7.65 -2.39 -0.02 0.12 16 39 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 40 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 41 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 42 H 0.10 1.16 8.10 -2.39 -0.02 1.14 16 43 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -68.94 357.02 5.95 -62.98 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.99 Total: 12.23 kcal Atomic # 6 Polarization: -37.16 SS G_CDS: 3.63 Total: -33.53 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.28 Total: -53.23 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.98 Total: -33.37 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -68.94 5.95 -62.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242316752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.380 kcal (2) G-P(sol) polarization free energy of solvation -68.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds