Wall clock time and date at job start Fri Apr 10 2020 20:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35757 * 117.00354 * 2 1 4 4 C 1.39477 * 119.42555 * 359.97438 * 3 2 1 5 5 C 1.37556 * 121.28754 * 180.02562 * 4 3 2 6 6 C 1.40046 * 120.07148 * 359.97438 * 5 4 3 7 7 C 1.41788 * 120.55010 * 180.02562 * 6 5 4 8 8 C 1.35615 * 119.45506 * 104.72834 * 7 6 5 9 9 C 1.40292 * 121.55471 * 179.53765 * 8 7 6 10 10 O 1.21501 * 119.73372 * 180.08467 * 9 8 7 11 11 C 1.50696 * 120.54432 * 0.34542 * 9 8 7 12 12 C 1.53185 * 109.10740 * 330.84942 * 11 9 8 13 13 C 1.53000 * 109.56592 * 297.15320 * 12 11 9 14 14 C 1.53002 * 109.56897 * 176.80347 * 12 11 9 15 15 C 1.50550 * 119.45042 * 285.00069 * 7 6 5 16 16 C 1.46853 * 118.89426 * 0.27826 * 6 5 4 17 17 C 1.40550 * 120.60710 * 179.74794 * 16 6 5 18 18 H 1.08002 * 119.99843 * 25.70270 * 17 16 6 19 19 C 1.40408 * 119.99813 * 205.69714 * 17 16 6 20 20 N 1.30568 * 119.99918 * 14.37395 * 19 17 16 21 21 Si 1.86796 * 120.00171 * 194.37323 * 19 17 16 22 22 H 1.48503 * 109.47166 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47155 * 119.99987 * 21 19 17 24 24 H 1.48494 * 109.47298 * 240.00262 * 21 19 17 25 25 C 1.37968 * 119.42689 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47079 * 59.99653 * 1 2 3 27 27 H 1.08993 * 109.47423 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47047 * 300.00707 * 1 2 3 29 29 H 1.08001 * 119.35493 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.96222 * 180.02562 * 5 4 3 31 31 H 1.07999 * 119.21617 * 359.76992 * 8 7 6 32 32 H 1.09001 * 109.53702 * 210.95797 * 11 9 8 33 33 H 1.08998 * 109.58803 * 90.76659 * 11 9 8 34 34 H 1.08997 * 109.47428 * 179.41298 * 13 12 11 35 35 H 1.09007 * 109.47170 * 299.41250 * 13 12 11 36 36 H 1.08998 * 109.47269 * 59.40952 * 13 12 11 37 37 H 1.09001 * 109.46582 * 300.58956 * 14 12 11 38 38 H 1.08998 * 109.47058 * 60.58183 * 14 12 11 39 39 H 1.08992 * 109.47137 * 180.58970 * 14 12 11 40 40 H 1.09005 * 109.46892 * 329.70245 * 15 7 6 41 41 H 1.08999 * 109.47259 * 89.70504 * 15 7 6 42 42 H 0.97003 * 119.99896 * 179.97438 * 20 19 17 43 43 H 1.08001 * 120.09682 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2741 2.3717 -0.0005 5 6 1.8585 3.6169 -0.0011 6 6 3.2538 3.7373 -0.0006 7 6 3.8669 5.0158 -0.0006 8 6 4.4255 5.4875 1.1416 9 6 5.0518 6.7419 1.1889 10 8 5.5430 7.1314 2.2297 11 6 5.1155 7.6129 -0.0392 12 6 5.1253 6.7224 -1.2856 13 6 6.3823 5.8500 -1.2821 14 6 5.1094 7.5973 -2.5407 15 6 3.8815 5.8297 -1.2670 16 6 4.0712 2.5173 -0.0057 17 6 5.4745 2.5962 -0.0106 18 1 5.9678 3.4673 0.3947 19 6 6.2350 1.5425 -0.5425 20 7 5.6605 0.6291 -1.2776 21 14 8.0685 1.4476 -0.1986 22 1 8.4722 2.5942 0.6544 23 1 8.3750 0.1761 0.5047 24 1 8.8159 1.4967 -1.4807 25 6 3.4238 1.2679 0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 0.1970 2.2923 -0.0014 30 1 1.2406 4.5027 -0.0011 31 1 4.3905 4.8815 2.0349 32 1 6.0247 8.2136 -0.0133 33 1 4.2457 8.2692 -0.0672 34 1 6.3825 5.2096 -2.1641 35 1 7.2667 6.4870 -1.2953 36 1 6.3931 5.2320 -0.3844 37 1 4.2156 8.2211 -2.5373 38 1 5.9954 8.2321 -2.5523 39 1 5.1059 6.9621 -3.4263 40 1 3.9008 5.1615 -2.1281 41 1 2.9873 6.4515 -1.3096 42 1 6.1859 -0.0987 -1.6454 43 1 4.0044 0.3572 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242317080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:35 Heat of formation + Delta-G solvation = -59.307262 kcal Electronic energy + Delta-G solvation = -24907.439480 eV Core-core repulsion = 21496.223013 eV Total energy + Delta-G solvation = -3411.216467 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.01669 -38.73315 -37.20565 -36.22433 -33.91130 -32.75105 -29.90509 -29.34415 -28.17287 -27.06365 -26.52220 -26.36347 -25.30853 -22.41016 -21.01982 -20.06737 -19.24331 -17.83957 -16.73845 -16.27478 -15.79227 -15.38578 -15.10521 -14.90247 -14.81203 -14.49728 -14.02302 -13.95400 -13.45859 -13.20751 -12.86897 -12.68510 -12.47151 -12.07485 -11.95658 -11.84648 -11.64196 -11.39418 -11.38835 -11.28262 -11.16338 -11.02023 -10.89868 -10.59465 -10.50855 -10.31527 -10.06107 -9.82926 -9.71630 -9.32987 -8.93384 -8.21440 -7.64413 -7.06686 -6.79357 -4.60084 1.52417 2.56289 2.79572 2.98978 3.05129 3.10519 3.63903 3.78497 4.24096 4.43115 4.76757 4.84284 5.04312 5.16059 5.40010 5.56246 5.60519 5.65278 5.67835 5.74932 5.78709 5.83099 5.85277 5.94672 5.95790 6.06659 6.10536 6.14722 6.25811 6.33986 6.40295 6.46850 6.64797 6.71607 6.83621 6.88202 6.95850 7.07789 7.25948 7.32525 7.56750 7.64403 7.83894 7.89943 8.21197 8.23771 8.59634 8.62993 8.77306 9.92849 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.011307 B = 0.006522 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.841797 B = 4292.278392 C = 5746.407634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.330 6.330 3 C 0.145 3.855 4 C -0.326 4.326 5 C -0.028 4.028 6 C -0.259 4.259 7 C 0.124 3.876 8 C -0.293 4.293 9 C 0.397 3.603 10 O -0.499 6.499 11 C -0.158 4.158 12 C -0.056 4.056 13 C -0.151 4.151 14 C -0.139 4.139 15 C -0.094 4.094 16 C 0.166 3.834 17 C -0.437 4.437 18 H 0.091 0.909 19 C 0.077 3.923 20 N -0.769 5.769 21 Si 0.903 3.097 22 H -0.255 1.255 23 H -0.269 1.269 24 H -0.271 1.271 25 C -0.204 4.204 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.124 0.876 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.286 0.714 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.931 5.597 -3.600 7.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.244 6.244 3 C 0.100 3.900 4 C -0.346 4.346 5 C -0.046 4.046 6 C -0.260 4.260 7 C 0.123 3.877 8 C -0.312 4.312 9 C 0.282 3.718 10 O -0.381 6.381 11 C -0.196 4.196 12 C -0.056 4.056 13 C -0.208 4.208 14 C -0.196 4.196 15 C -0.130 4.130 16 C 0.163 3.837 17 C -0.465 4.465 18 H 0.109 0.891 19 C -0.145 4.145 20 N -0.392 5.392 21 Si 0.727 3.273 22 H -0.178 1.178 23 H -0.194 1.194 24 H -0.196 1.196 25 C -0.224 4.224 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.142 0.858 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.542 5.388 -3.234 6.779 hybrid contribution 0.376 -0.164 -0.039 0.412 sum -2.165 5.225 -3.272 6.534 Atomic orbital electron populations 1.22769 0.80682 1.01917 1.00570 1.85988 1.19611 1.29264 1.89522 1.19019 0.92388 0.82461 0.96093 1.20194 0.97352 0.92512 1.24545 1.20273 0.92617 0.95252 0.96477 1.18676 0.92658 0.91779 1.22892 1.19939 0.84844 0.91031 0.91889 1.22088 1.10032 0.98950 1.00134 1.20758 0.75524 0.87180 0.88346 1.90529 1.40313 1.74135 1.33097 1.22211 1.03834 0.98843 0.94708 1.20577 0.96175 0.94815 0.94069 1.22044 0.95383 0.99351 1.04047 1.21842 1.01490 0.99241 0.97005 1.21051 0.97122 0.97572 0.97295 1.18179 0.92076 0.88083 0.85354 1.19703 0.90975 1.03020 1.32769 0.89143 1.26062 1.01635 0.94179 0.92575 1.69717 1.38741 1.09762 1.20930 0.86297 0.81472 0.79987 0.79565 1.17794 1.19355 1.19573 1.20553 0.89357 0.99004 1.13443 0.93592 0.89888 0.93642 0.88618 0.88882 0.85766 0.89644 0.89034 0.91854 0.93277 0.90939 0.92729 0.92632 0.92180 0.89375 0.90119 0.90313 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.79 101.05 0.99 1.55 16 2 O -0.33 -7.02 10.47 -18.98 -0.20 -7.22 16 3 C 0.14 3.35 6.67 -39.22 -0.26 3.09 16 4 C -0.33 -6.91 8.97 -39.37 -0.35 -7.27 16 5 C -0.03 -0.58 9.76 -39.15 -0.38 -0.96 16 6 C -0.26 -5.65 5.16 -104.38 -0.54 -6.19 16 7 C 0.12 2.36 3.53 -104.28 -0.37 2.00 16 8 C -0.29 -5.78 7.61 -39.75 -0.30 -6.08 16 9 C 0.40 7.39 6.06 -33.54 -0.20 7.18 16 10 O -0.50 -10.76 17.82 5.36 0.10 -10.66 16 11 C -0.16 -2.29 4.88 -27.79 -0.14 -2.43 16 12 C -0.06 -0.79 0.78 -154.35 -0.12 -0.91 16 13 C -0.15 -2.39 8.09 37.16 0.30 -2.09 16 14 C -0.14 -1.54 8.50 37.16 0.32 -1.23 16 15 C -0.09 -1.47 4.66 -27.90 -0.13 -1.60 16 16 C 0.17 4.08 5.73 -104.60 -0.60 3.48 16 17 C -0.44 -10.53 8.54 -37.89 -0.32 -10.85 16 18 H 0.09 2.15 5.13 -52.49 -0.27 1.88 16 19 C 0.08 1.79 5.21 -17.27 -0.09 1.70 16 20 N -0.77 -18.47 10.86 55.57 0.60 -17.87 16 21 Si 0.90 17.74 29.59 -169.99 -5.03 12.71 16 22 H -0.25 -5.06 7.11 56.52 0.40 -4.66 16 23 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 24 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 25 C -0.20 -5.13 8.61 -38.74 -0.33 -5.46 16 26 H 0.05 0.67 7.62 -51.93 -0.40 0.28 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.04 0.66 7.62 -51.93 -0.40 0.26 16 29 H 0.10 1.78 6.16 -52.49 -0.32 1.46 16 30 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 31 H 0.12 2.67 8.04 -52.49 -0.42 2.25 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.34 4.52 -51.93 -0.23 1.11 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.45 8.09 -51.93 -0.42 1.03 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.29 6.24 8.29 -40.82 -0.34 5.90 16 43 H 0.13 3.44 6.16 -52.49 -0.32 3.12 16 LS Contribution 345.56 15.07 5.21 5.21 Total: -1.00 -27.52 345.56 -8.00 -35.53 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.15 Total: 8.36 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: -2.54 Total: -26.06 kcal Atomic # 7 Polarization: -18.47 SS G_CDS: 0.60 Total: -17.87 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.10 Total: -17.88 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.52 -8.00 -35.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242317080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.780 kcal (2) G-P(sol) polarization free energy of solvation -27.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds