Wall clock time and date at job start Fri Apr 10 2020 20:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35757 * 117.00354 * 2 1 4 4 C 1.39477 * 119.42555 * 359.97438 * 3 2 1 5 5 C 1.37556 * 121.28754 * 180.02562 * 4 3 2 6 6 C 1.40046 * 120.07148 * 359.97438 * 5 4 3 7 7 C 1.41788 * 120.55010 * 180.02562 * 6 5 4 8 8 C 1.35615 * 119.45506 * 104.72834 * 7 6 5 9 9 C 1.40292 * 121.55471 * 179.53765 * 8 7 6 10 10 O 1.21501 * 119.73372 * 180.08467 * 9 8 7 11 11 C 1.50696 * 120.54432 * 0.34542 * 9 8 7 12 12 C 1.53185 * 109.10740 * 330.84942 * 11 9 8 13 13 C 1.53000 * 109.56592 * 297.15320 * 12 11 9 14 14 C 1.53002 * 109.56897 * 176.80347 * 12 11 9 15 15 C 1.50550 * 119.45042 * 285.00069 * 7 6 5 16 16 C 1.46853 * 118.89426 * 0.27826 * 6 5 4 17 17 C 1.40550 * 120.60710 * 179.74794 * 16 6 5 18 18 H 1.08002 * 119.99843 * 25.70270 * 17 16 6 19 19 C 1.40408 * 119.99813 * 205.69714 * 17 16 6 20 20 N 1.30568 * 119.99918 * 14.37395 * 19 17 16 21 21 Si 1.86796 * 120.00171 * 194.37323 * 19 17 16 22 22 H 1.48503 * 109.47166 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47155 * 119.99987 * 21 19 17 24 24 H 1.48494 * 109.47298 * 240.00262 * 21 19 17 25 25 C 1.37968 * 119.42689 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47079 * 59.99653 * 1 2 3 27 27 H 1.08993 * 109.47423 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47047 * 300.00707 * 1 2 3 29 29 H 1.08001 * 119.35493 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.96222 * 180.02562 * 5 4 3 31 31 H 1.07999 * 119.21617 * 359.76992 * 8 7 6 32 32 H 1.09001 * 109.53702 * 210.95797 * 11 9 8 33 33 H 1.08998 * 109.58803 * 90.76659 * 11 9 8 34 34 H 1.08997 * 109.47428 * 179.41298 * 13 12 11 35 35 H 1.09007 * 109.47170 * 299.41250 * 13 12 11 36 36 H 1.08998 * 109.47269 * 59.40952 * 13 12 11 37 37 H 1.09001 * 109.46582 * 300.58956 * 14 12 11 38 38 H 1.08998 * 109.47058 * 60.58183 * 14 12 11 39 39 H 1.08992 * 109.47137 * 180.58970 * 14 12 11 40 40 H 1.09005 * 109.46892 * 329.70245 * 15 7 6 41 41 H 1.08999 * 109.47259 * 89.70504 * 15 7 6 42 42 H 0.97003 * 119.99896 * 179.97438 * 20 19 17 43 43 H 1.08001 * 120.09682 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2741 2.3717 -0.0005 5 6 1.8585 3.6169 -0.0011 6 6 3.2538 3.7373 -0.0006 7 6 3.8669 5.0158 -0.0006 8 6 4.4255 5.4875 1.1416 9 6 5.0518 6.7419 1.1889 10 8 5.5430 7.1314 2.2297 11 6 5.1155 7.6129 -0.0392 12 6 5.1253 6.7224 -1.2856 13 6 6.3823 5.8500 -1.2821 14 6 5.1094 7.5973 -2.5407 15 6 3.8815 5.8297 -1.2670 16 6 4.0712 2.5173 -0.0057 17 6 5.4745 2.5962 -0.0106 18 1 5.9678 3.4673 0.3947 19 6 6.2350 1.5425 -0.5425 20 7 5.6605 0.6291 -1.2776 21 14 8.0685 1.4476 -0.1986 22 1 8.4722 2.5942 0.6544 23 1 8.3750 0.1761 0.5047 24 1 8.8159 1.4967 -1.4807 25 6 3.4238 1.2679 0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 0.1970 2.2923 -0.0014 30 1 1.2406 4.5027 -0.0011 31 1 4.3905 4.8815 2.0349 32 1 6.0247 8.2136 -0.0133 33 1 4.2457 8.2692 -0.0672 34 1 6.3825 5.2096 -2.1641 35 1 7.2667 6.4870 -1.2953 36 1 6.3931 5.2320 -0.3844 37 1 4.2156 8.2211 -2.5373 38 1 5.9954 8.2321 -2.5523 39 1 5.1059 6.9621 -3.4263 40 1 3.9008 5.1615 -2.1281 41 1 2.9873 6.4515 -1.3096 42 1 6.1859 -0.0987 -1.6454 43 1 4.0044 0.3572 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242317080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:34 Heat of formation + Delta-G solvation = -72.662653 kcal Electronic energy + Delta-G solvation = -24908.018614 eV Core-core repulsion = 21496.223013 eV Total energy + Delta-G solvation = -3411.795601 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.42541 -40.36965 -38.72939 -37.73956 -35.63327 -34.23866 -31.66340 -30.82518 -29.60962 -28.29530 -27.80149 -27.61172 -26.99973 -23.97644 -22.76245 -21.51274 -20.65677 -19.54408 -18.15133 -17.93193 -17.30450 -16.97806 -16.53797 -16.44294 -16.33231 -15.89440 -15.53030 -15.18139 -14.91869 -14.74323 -14.45600 -14.09935 -13.97743 -13.54540 -13.25982 -13.05611 -12.97168 -12.89972 -12.82364 -12.75007 -12.54069 -12.46306 -12.34250 -12.05150 -11.83421 -11.65888 -11.49868 -11.41116 -11.30219 -11.04124 -10.39669 -9.76832 -9.44455 -8.82222 -8.52064 -6.43326 0.01540 0.84236 1.06146 1.33633 1.45915 1.47192 2.12797 2.16178 2.64559 2.77047 3.47216 3.52034 3.69959 3.91094 3.99979 4.24892 4.31523 4.41610 4.45499 4.46473 4.48798 4.57643 4.67483 4.71478 4.74596 4.83766 4.93649 4.95656 4.99509 5.01220 5.08475 5.20968 5.26031 5.28256 5.35139 5.40113 5.46360 5.51414 5.57619 5.76775 5.87440 5.90469 6.05860 6.14100 6.43001 6.77834 6.80640 6.86495 7.02433 8.19927 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.011307 B = 0.006522 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.841797 B = 4292.278392 C = 5746.407634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.139 3.861 4 C -0.325 4.325 5 C -0.031 4.031 6 C -0.265 4.265 7 C 0.132 3.868 8 C -0.307 4.307 9 C 0.397 3.603 10 O -0.538 6.538 11 C -0.148 4.148 12 C -0.049 4.049 13 C -0.154 4.154 14 C -0.132 4.132 15 C -0.091 4.091 16 C 0.141 3.859 17 C -0.459 4.459 18 H 0.084 0.916 19 C 0.044 3.956 20 N -0.799 5.799 21 Si 0.962 3.038 22 H -0.262 1.262 23 H -0.265 1.265 24 H -0.257 1.257 25 C -0.241 4.241 26 H 0.057 0.943 27 H 0.114 0.886 28 H 0.057 0.943 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.125 0.875 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.036 0.964 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.115 0.885 42 H 0.292 0.708 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.111 7.825 -5.094 10.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.268 6.268 3 C 0.095 3.905 4 C -0.344 4.344 5 C -0.049 4.049 6 C -0.267 4.267 7 C 0.131 3.869 8 C -0.326 4.326 9 C 0.285 3.715 10 O -0.423 6.423 11 C -0.185 4.185 12 C -0.049 4.049 13 C -0.211 4.211 14 C -0.189 4.189 15 C -0.128 4.128 16 C 0.138 3.862 17 C -0.487 4.487 18 H 0.102 0.898 19 C -0.175 4.175 20 N -0.423 5.423 21 Si 0.783 3.217 22 H -0.185 1.185 23 H -0.190 1.190 24 H -0.181 1.181 25 C -0.261 4.261 26 H 0.075 0.925 27 H 0.133 0.867 28 H 0.075 0.925 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.142 0.858 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.133 0.867 42 H 0.103 0.897 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.747 7.605 -4.745 9.715 hybrid contribution 0.561 -0.956 0.465 1.202 sum -3.186 6.649 -4.280 8.525 Atomic orbital electron populations 1.23149 0.77545 1.04507 1.01590 1.85951 1.22882 1.28662 1.89265 1.19152 0.92103 0.83924 0.95360 1.20541 0.98821 0.91869 1.23215 1.20700 0.92439 0.96535 0.95209 1.19031 0.93508 0.92209 1.21938 1.20111 0.83431 0.90213 0.93142 1.21977 1.11322 0.99894 0.99424 1.21205 0.73989 0.86886 0.89419 1.90511 1.42056 1.74776 1.34939 1.22199 1.06037 0.98307 0.91933 1.20556 0.94092 0.94542 0.95676 1.22056 0.97548 0.99548 1.01929 1.21798 1.03359 0.98977 0.94795 1.21135 0.99531 0.97654 0.94456 1.18492 0.92781 0.89029 0.85921 1.19776 0.91362 1.03568 1.34002 0.89832 1.26721 1.05167 0.93582 0.92003 1.69771 1.40247 1.10445 1.21834 0.85429 0.77011 0.79533 0.79706 1.18528 1.18978 1.18094 1.20490 0.90627 0.98469 1.16531 0.92479 0.86748 0.92487 0.85550 0.85360 0.89206 0.88166 0.85752 0.92535 0.91518 0.94446 0.90470 0.91228 0.92069 0.90240 0.86694 0.89728 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 9.79 113.37 1.11 1.88 16 2 O -0.35 -15.07 10.47 -90.83 -0.95 -16.02 16 3 C 0.14 6.56 6.67 22.50 0.15 6.71 16 4 C -0.33 -13.35 8.97 22.41 0.20 -13.15 16 5 C -0.03 -1.23 9.76 22.55 0.22 -1.01 16 6 C -0.27 -11.73 5.16 -19.71 -0.10 -11.83 16 7 C 0.13 5.00 3.53 -19.64 -0.07 4.93 16 8 C -0.31 -12.38 7.61 22.16 0.17 -12.21 16 9 C 0.40 14.62 6.06 26.18 0.16 14.78 16 10 O -0.54 -23.47 17.82 -3.72 -0.07 -23.53 16 11 C -0.15 -3.80 4.88 29.91 0.15 -3.66 16 12 C -0.05 -1.22 0.78 -52.08 -0.04 -1.26 16 13 C -0.15 -4.71 8.09 71.98 0.58 -4.13 16 14 C -0.13 -2.34 8.50 71.98 0.61 -1.73 16 15 C -0.09 -2.64 4.66 29.84 0.14 -2.50 16 16 C 0.14 7.23 5.73 -19.85 -0.11 7.12 16 17 C -0.46 -23.39 8.54 23.36 0.20 -23.19 16 18 H 0.08 4.24 5.13 -2.91 -0.01 4.23 16 19 C 0.04 2.14 5.21 85.41 0.45 2.58 16 20 N -0.80 -40.33 10.86 21.90 0.24 -40.09 16 21 Si 0.96 37.73 29.59 68.60 2.03 39.76 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 23 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 24 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 25 C -0.24 -12.77 8.61 22.81 0.20 -12.57 16 26 H 0.06 1.53 7.62 -2.39 -0.02 1.51 16 27 H 0.11 2.56 8.14 -2.39 -0.02 2.55 16 28 H 0.06 1.52 7.62 -2.39 -0.02 1.50 16 29 H 0.13 4.33 6.16 -2.91 -0.02 4.31 16 30 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 31 H 0.09 4.15 8.04 -2.91 -0.02 4.13 16 32 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.04 1.40 4.52 -2.39 -0.01 1.39 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 2.48 8.09 -2.38 -0.02 2.46 16 41 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.29 13.31 8.29 -92.71 -0.77 12.54 16 43 H 0.10 5.89 6.16 -2.91 -0.02 5.88 16 Total: -1.00 -64.53 345.56 6.27 -58.26 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 1.01 Total: 30.87 kcal Atomic # 6 Polarization: -53.26 SS G_CDS: 4.00 Total: -49.26 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.24 Total: -40.09 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -1.02 Total: -39.55 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Total: -64.53 6.27 -58.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242317080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.398 kcal (2) G-P(sol) polarization free energy of solvation -64.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds