Wall clock time and date at job start Fri Apr 10 2020 20:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99889 * 2 1 4 4 H 1.48498 * 109.47106 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47138 * 300.00207 * 3 2 1 6 6 H 1.48506 * 109.47226 * 60.00157 * 3 2 1 7 7 C 1.37871 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99971 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00421 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46927 * 179.97438 * 9 7 2 11 11 C 1.50711 * 109.46655 * 179.97438 * 10 9 7 12 12 C 1.38961 * 119.68805 * 90.00040 * 11 10 9 13 13 C 1.36591 * 120.81710 * 180.02562 * 12 11 10 14 14 C 1.39291 * 119.84792 * 359.97438 * 13 12 11 15 15 C 1.40820 * 119.42096 * 0.15021 * 14 13 12 16 16 C 1.45921 * 106.31469 * 180.25704 * 15 14 13 17 17 N 1.30243 * 107.79035 * 359.77359 * 16 15 14 18 18 N 1.37036 * 133.84344 * 180.02562 * 14 13 12 19 19 C 1.46500 * 125.46358 * 0.02562 * 18 14 13 20 20 H 1.09001 * 109.48913 * 14.69267 * 19 18 14 21 21 C 1.53096 * 109.48205 * 254.66279 * 19 18 14 22 22 C 1.53180 * 109.16300 * 182.40776 * 21 19 18 23 23 C 1.53180 * 109.03380 * 56.98167 * 22 21 19 24 24 C 1.53093 * 109.16207 * 303.01706 * 23 22 21 25 25 O 1.42905 * 109.41479 * 57.61537 * 24 23 22 26 26 C 1.36474 * 119.68160 * 270.39939 * 11 10 9 27 27 H 0.97004 * 120.00327 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47013 * 59.99779 * 9 7 2 29 29 H 1.09000 * 109.46702 * 299.99265 * 9 7 2 30 30 H 1.08998 * 109.47715 * 60.00427 * 10 9 7 31 31 H 1.08999 * 109.47503 * 299.99162 * 10 9 7 32 32 H 1.08003 * 119.59013 * 359.97438 * 12 11 10 33 33 H 1.07992 * 120.07651 * 180.02562 * 13 12 11 34 34 H 1.08007 * 126.10278 * 179.76257 * 16 15 14 35 35 H 1.09001 * 109.52258 * 302.31535 * 21 19 18 36 36 H 1.09004 * 109.52122 * 62.50264 * 21 19 18 37 37 H 1.08996 * 109.54294 * 297.11731 * 22 21 19 38 38 H 1.08991 * 109.61523 * 176.89367 * 22 21 19 39 39 H 1.09000 * 109.52369 * 183.11217 * 23 22 21 40 40 H 1.08994 * 109.52239 * 62.92462 * 23 22 21 41 41 H 1.09000 * 109.48469 * 297.62848 * 24 23 22 42 42 H 1.09009 * 109.48868 * 177.59383 * 24 23 22 43 43 H 1.08005 * 120.18066 * 359.51575 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4918 -4.9672 0.0012 12 6 1.1472 -5.5636 -1.2057 13 6 0.4639 -6.7460 -1.2321 14 6 0.1059 -7.3665 -0.0375 15 6 0.4518 -6.7624 1.1866 16 6 -0.0494 -7.6448 2.2352 17 7 -0.6324 -8.6568 1.6588 18 7 -0.5620 -8.5234 0.2682 19 6 -1.1090 -9.4717 -0.7053 20 1 -0.6887 -9.2654 -1.6897 21 6 -2.6321 -9.3260 -0.7598 22 6 -3.2017 -10.3612 -1.7347 23 6 -2.7671 -11.7604 -1.2878 24 6 -1.2389 -11.8120 -1.2130 25 8 -0.7730 -10.8042 -0.3133 26 6 1.1471 -5.5480 1.1871 27 1 -0.4851 0.8400 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.8720 -3.6044 0.8905 31 1 2.8719 -3.6044 -0.8895 32 1 1.4224 -5.0858 -2.1344 33 1 0.2027 -7.1992 -2.1769 34 1 0.0462 -7.4869 3.2994 35 1 -3.0496 -9.4924 0.2332 36 1 -2.8901 -8.3235 -1.1012 37 1 -2.8228 -10.1647 -2.7376 38 1 -4.2899 -10.3010 -1.7377 39 1 -3.1217 -12.4990 -2.0067 40 1 -3.1874 -11.9760 -0.3055 41 1 -0.8202 -11.6364 -2.2039 42 1 -0.9252 -12.7925 -0.8543 43 1 1.4197 -5.0788 2.1209 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:38 Heat of formation + Delta-G solvation = 7.056238 kcal Electronic energy + Delta-G solvation = -23505.526005 eV Core-core repulsion = 20129.480025 eV Total energy + Delta-G solvation = -3376.045979 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.31935 -40.34307 -38.66496 -35.59870 -34.80270 -34.36771 -33.49397 -31.51250 -30.64186 -29.60592 -26.76325 -25.87456 -24.75204 -24.04948 -23.39130 -21.99779 -21.54718 -20.98841 -18.62964 -18.50073 -17.70406 -17.14951 -16.68731 -16.49748 -16.22679 -16.07766 -15.59857 -15.45113 -14.92201 -14.82627 -14.52079 -14.35509 -14.26367 -13.90282 -13.78688 -13.53166 -13.09986 -12.83934 -12.68975 -12.46822 -12.34291 -12.28335 -12.07283 -11.93301 -11.88478 -11.55519 -11.52426 -11.48829 -11.16069 -11.03851 -10.53737 -10.51729 -9.58530 -8.75299 -8.15627 -6.27193 0.00943 0.53287 1.18529 1.42622 1.43146 1.54527 1.56390 2.43880 2.62984 2.85244 3.17209 3.48309 3.51604 3.57839 3.78685 3.83419 3.90066 3.93795 4.05327 4.06448 4.25805 4.37548 4.48441 4.51265 4.58592 4.68562 4.76962 4.77899 4.87720 4.92004 4.96506 5.01006 5.05404 5.09319 5.23954 5.27415 5.36877 5.51365 5.56648 5.61693 5.74804 5.90064 5.94572 5.98305 6.23159 6.28497 6.65240 6.90860 7.42129 8.95685 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.030639 B = 0.002678 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.639951 B =10454.882628 C =10718.776733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.036 3.964 10 C -0.059 4.059 11 C -0.116 4.116 12 C -0.067 4.067 13 C -0.141 4.141 14 C 0.108 3.892 15 C -0.190 4.190 16 C 0.074 3.926 17 N -0.267 5.267 18 N -0.410 5.410 19 C 0.344 3.656 20 H 0.103 0.897 21 C -0.154 4.154 22 C -0.116 4.116 23 C -0.154 4.154 24 C 0.059 3.941 25 O -0.409 6.409 26 C -0.049 4.049 27 H 0.262 0.738 28 H -0.009 1.009 29 H -0.011 1.011 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.227 0.773 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.112 0.888 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.738 -24.107 -4.307 24.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.082 0.918 9 C -0.002 4.002 10 C -0.096 4.096 11 C -0.118 4.118 12 C -0.087 4.087 13 C -0.163 4.163 14 C -0.005 4.005 15 C -0.198 4.198 16 C -0.124 4.124 17 N -0.078 5.078 18 N -0.202 5.202 19 C 0.204 3.796 20 H 0.120 0.880 21 C -0.193 4.193 22 C -0.153 4.153 23 C -0.192 4.192 24 C -0.017 4.017 25 O -0.328 6.328 26 C -0.069 4.069 27 H 0.071 0.929 28 H 0.009 0.991 29 H 0.007 0.993 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.159 0.841 33 H 0.166 0.834 34 H 0.243 0.757 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.123 0.877 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.130 0.870 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.478 -25.302 -4.084 26.018 hybrid contribution 0.350 1.915 -0.054 1.948 sum -4.128 -23.387 -4.138 24.106 Atomic orbital electron populations 1.70122 1.07851 1.27576 1.51970 1.25978 0.95710 1.03341 0.94896 0.85417 0.79217 0.78883 0.77638 1.18373 1.20506 1.20606 1.21766 0.93684 0.92214 1.50043 0.91829 1.18941 0.94068 0.92362 0.94781 1.20494 0.97051 0.90204 1.01874 1.19773 1.01411 0.97196 0.93389 1.20880 0.95680 0.93790 0.98380 1.19972 1.03916 0.97064 0.95354 1.18976 0.96355 0.88663 0.96488 1.20138 1.08006 0.98952 0.92705 1.25659 0.95884 0.89996 1.00888 1.76541 1.19998 1.22437 0.88801 1.48356 1.50406 1.18208 1.03227 1.21845 0.92797 0.77952 0.87037 0.87975 1.22448 0.93714 1.01479 1.01692 1.21623 1.02080 0.93162 0.98482 1.22224 0.95862 0.98009 1.03101 1.22929 0.94361 0.90737 0.93635 1.87897 1.78386 1.14634 1.51864 1.20361 0.95514 0.92377 0.98675 0.92905 0.99103 0.99303 0.91801 0.91495 0.84052 0.83351 0.75697 0.92012 0.90722 0.89762 0.89634 0.87694 0.91856 0.91082 0.87018 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 3 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.54 -30.42 9.11 25.60 0.23 -30.18 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.04 1.87 4.96 29.85 0.15 2.02 16 10 C -0.06 -2.40 5.26 29.85 0.16 -2.24 16 11 C -0.12 -4.20 5.10 -20.10 -0.10 -4.30 16 12 C -0.07 -2.13 9.61 22.06 0.21 -1.91 16 13 C -0.14 -4.04 9.81 22.14 0.22 -3.82 16 14 C 0.11 3.40 6.87 39.22 0.27 3.67 16 15 C -0.19 -6.20 6.37 -20.24 -0.13 -6.32 16 16 C 0.07 2.10 12.28 86.92 1.07 3.16 16 17 N -0.27 -8.40 12.31 -53.09 -0.65 -9.05 16 18 N -0.41 -12.27 3.54 -433.91 -1.54 -13.81 16 19 C 0.34 7.97 3.55 86.41 0.31 8.27 16 20 H 0.10 1.95 7.59 -2.39 -0.02 1.93 16 21 C -0.15 -3.05 5.74 30.69 0.18 -2.87 16 22 C -0.12 -1.41 6.03 30.71 0.19 -1.23 16 23 C -0.15 -1.69 6.14 30.69 0.19 -1.51 16 24 C 0.06 0.81 6.84 72.01 0.49 1.30 16 25 O -0.41 -9.70 10.55 -148.98 -1.57 -11.27 16 26 C -0.05 -1.67 9.68 22.27 0.22 -1.45 16 27 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 28 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 29 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 30 H 0.06 2.50 8.08 -2.39 -0.02 2.48 16 31 H 0.07 2.58 8.08 -2.39 -0.02 2.56 16 32 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 33 H 0.15 3.18 7.74 -2.91 -0.02 3.16 16 34 H 0.23 4.49 8.06 -2.91 -0.02 4.47 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 42 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -72.63 356.47 3.63 -69.00 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.98 Total: 12.97 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 4.10 Total: -37.05 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -1.91 Total: -79.80 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -1.57 Total: -11.27 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -72.63 3.63 -69.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.059 kcal (2) G-P(sol) polarization free energy of solvation -72.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds