Wall clock time and date at job start Fri Apr 10 2020 20:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47250 * 240.00484 * 3 2 1 5 5 H 1.48509 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47439 * 120.00493 * 3 2 1 7 7 C 1.37873 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99370 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00394 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47084 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46707 * 179.97438 * 10 9 7 12 12 C 1.38963 * 119.68674 * 270.02069 * 11 10 9 13 13 C 1.36590 * 120.81391 * 180.02562 * 12 11 10 14 14 C 1.39288 * 119.85349 * 359.95457 * 13 12 11 15 15 C 1.40814 * 119.41560 * 0.04464 * 14 13 12 16 16 C 1.45926 * 106.31823 * 179.97438 * 15 14 13 17 17 N 1.30242 * 107.78648 * 359.97438 * 16 15 14 18 18 N 1.37039 * 133.85180 * 180.02562 * 14 13 12 19 19 C 1.46503 * 125.45947 * 0.02562 * 18 14 13 20 20 H 1.09006 * 109.47714 * 344.96843 * 19 18 14 21 21 C 1.53086 * 109.48164 * 104.99344 * 19 18 14 22 22 C 1.53179 * 109.16245 * 177.59009 * 21 19 18 23 23 C 1.53187 * 109.03511 * 303.02253 * 22 21 19 24 24 C 1.53087 * 109.16292 * 56.98076 * 23 22 21 25 25 O 1.42900 * 109.41504 * 302.38827 * 24 23 22 26 26 C 1.36469 * 119.68544 * 90.00108 * 11 10 9 27 27 H 0.96997 * 119.99811 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47294 * 60.00004 * 9 7 2 29 29 H 1.09006 * 109.46791 * 300.00530 * 9 7 2 30 30 H 1.09003 * 109.47425 * 60.00189 * 10 9 7 31 31 H 1.08993 * 109.47289 * 299.99482 * 10 9 7 32 32 H 1.08002 * 119.59084 * 359.97438 * 12 11 10 33 33 H 1.08001 * 120.07490 * 179.97438 * 13 12 11 34 34 H 1.08006 * 126.11086 * 179.73904 * 16 15 14 35 35 H 1.08998 * 109.52466 * 297.49361 * 21 19 18 36 36 H 1.08999 * 109.51972 * 57.68941 * 21 19 18 37 37 H 1.08998 * 109.54206 * 62.88548 * 22 21 19 38 38 H 1.08996 * 109.54629 * 183.15622 * 22 21 19 39 39 H 1.09004 * 109.51842 * 176.88621 * 23 22 21 40 40 H 1.08995 * 109.52081 * 297.01081 * 23 22 21 41 41 H 1.09003 * 109.48179 * 62.37113 * 24 23 22 42 42 H 1.08994 * 109.47953 * 182.39570 * 24 23 22 43 43 H 1.08008 * 120.17617 * 359.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9671 0.0001 12 6 1.1478 -5.5626 1.2076 13 6 0.4654 -6.7455 1.2351 14 6 0.1065 -7.3668 0.0412 15 6 0.4543 -6.7649 -1.1834 16 6 -0.0532 -7.6446 -2.2313 17 7 -0.6365 -8.6559 -1.6539 18 7 -0.5616 -8.5238 -0.2635 19 6 -1.1089 -9.4710 0.7110 20 1 -0.6840 -9.2675 1.6939 21 6 -2.6310 -9.3190 0.7713 22 6 -3.2013 -10.3530 1.7471 23 6 -2.7742 -11.7536 1.2968 24 6 -1.2466 -11.8114 1.2162 25 8 -0.7799 -10.8045 0.3161 26 6 1.1536 -5.5528 -1.1852 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5568 -0.8903 29 1 0.6247 -2.5570 0.8897 30 1 2.8721 -3.6043 0.8895 31 1 2.8720 -3.6043 -0.8905 32 1 1.4241 -5.0845 2.1358 33 1 0.2044 -7.1980 2.1804 34 1 0.0354 -7.4838 -3.2956 35 1 -2.8836 -8.3159 1.1149 36 1 -3.0530 -9.4825 -0.2203 37 1 -2.8178 -10.1593 2.7488 38 1 -4.2893 -10.2878 1.7527 39 1 -3.1293 -12.4914 2.0163 40 1 -3.2000 -11.9666 0.3164 41 1 -0.8235 -11.6387 2.2058 42 1 -0.9386 -12.7927 0.8554 43 1 1.4240 -5.0832 -2.1195 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:41 Heat of formation + Delta-G solvation = 26.067288 kcal Electronic energy + Delta-G solvation = -23504.880380 eV Core-core repulsion = 20129.658782 eV Total energy + Delta-G solvation = -3375.221598 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.17238 -39.52048 -37.38137 -34.08270 -33.69865 -33.33847 -31.79481 -30.35152 -29.45939 -28.14597 -25.30357 -24.78308 -23.91411 -22.74620 -21.76603 -21.10576 -20.23606 -19.92386 -17.54462 -16.76725 -16.36433 -16.22878 -15.66276 -15.26751 -14.90514 -14.73038 -14.53424 -14.45706 -13.97223 -13.65417 -13.18560 -13.17339 -13.09584 -12.52786 -12.45076 -11.94257 -11.77531 -11.64832 -11.53632 -11.39082 -11.03476 -10.92142 -10.83014 -10.68615 -10.58967 -10.50635 -10.17326 -9.79131 -9.74158 -9.38671 -9.08276 -8.35974 -8.30527 -7.48502 -5.97990 -4.01058 1.22416 1.81616 2.19897 2.70321 3.34349 3.38892 3.41172 3.47766 4.11138 4.33539 4.36546 4.39947 4.47540 4.49625 4.56092 4.76595 4.87823 4.94713 5.05074 5.17802 5.28889 5.32191 5.37418 5.38414 5.47841 5.50002 5.60706 5.69144 5.73731 5.86830 5.91404 6.11398 6.18263 6.41453 6.58086 6.66452 6.69460 6.75338 6.99144 7.13544 7.18973 7.32172 7.70338 7.80358 7.85036 8.02443 8.42825 9.06150 9.62898 11.12923 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.030601 B = 0.002678 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.783228 B =10451.690075 C =10717.605209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.029 3.971 10 C -0.075 4.075 11 C -0.093 4.093 12 C -0.059 4.059 13 C -0.148 4.148 14 C 0.118 3.882 15 C -0.170 4.170 16 C 0.070 3.930 17 N -0.244 5.244 18 N -0.407 5.407 19 C 0.353 3.647 20 H 0.086 0.914 21 C -0.160 4.160 22 C -0.120 4.120 23 C -0.160 4.160 24 C 0.069 3.931 25 O -0.381 6.381 26 C -0.045 4.045 27 H 0.261 0.739 28 H 0.017 0.983 29 H 0.016 0.984 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.129 0.871 33 H 0.117 0.883 34 H 0.194 0.806 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.053 0.947 42 H 0.100 0.900 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.199 -23.034 3.267 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.112 4.112 11 C -0.094 4.094 12 C -0.080 4.080 13 C -0.170 4.170 14 C 0.006 3.994 15 C -0.178 4.178 16 C -0.129 4.129 17 N -0.055 5.055 18 N -0.199 5.199 19 C 0.212 3.788 20 H 0.103 0.897 21 C -0.199 4.199 22 C -0.158 4.158 23 C -0.197 4.197 24 C -0.009 4.009 25 O -0.299 6.299 26 C -0.066 4.066 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.147 0.853 33 H 0.135 0.865 34 H 0.211 0.789 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.118 0.882 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.951 -24.187 3.037 24.875 hybrid contribution 0.568 1.703 0.390 1.837 sum -4.383 -22.484 3.426 23.162 Atomic orbital electron populations 1.69964 1.06050 1.26683 1.50697 1.25023 0.94828 0.99207 0.95356 0.86670 0.79579 0.83191 0.78619 1.20222 1.21343 1.20260 1.21234 0.93022 0.91035 1.50767 0.92651 1.19082 0.93699 0.90489 0.97509 1.20779 0.98180 0.90945 1.01316 1.19896 0.99931 0.97534 0.92078 1.20721 0.95475 0.93238 0.98528 1.19707 1.05163 0.97761 0.94370 1.18665 0.96512 0.88178 0.96038 1.19897 1.07403 0.98886 0.91605 1.25112 0.97045 0.91119 0.99603 1.76573 1.19234 1.21668 0.88033 1.48020 1.50850 1.17973 1.03062 1.21499 0.91991 0.78114 0.87221 0.89658 1.22503 0.94783 1.00673 1.01938 1.21602 1.01591 0.93924 0.98676 1.22247 0.96805 0.97704 1.02971 1.22611 0.93455 0.91410 0.93390 1.87936 1.77909 1.14076 1.49945 1.20269 0.95658 0.92031 0.98631 0.92960 0.96419 0.96517 0.92283 0.92218 0.85297 0.86501 0.78896 0.90116 0.89845 0.91412 0.90627 0.90378 0.90626 0.92836 0.88177 0.85391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.75 4.95 -27.89 -0.14 0.61 16 10 C -0.07 -1.51 5.26 -27.88 -0.15 -1.65 16 11 C -0.09 -1.67 5.10 -104.99 -0.54 -2.20 16 12 C -0.06 -0.96 9.60 -39.91 -0.38 -1.34 16 13 C -0.15 -2.21 9.81 -39.79 -0.39 -2.60 16 14 C 0.12 1.89 6.86 -84.17 -0.58 1.31 16 15 C -0.17 -2.79 6.37 -105.21 -0.67 -3.46 16 16 C 0.07 1.01 12.28 -15.15 -0.19 0.82 16 17 N -0.24 -3.88 12.31 31.87 0.39 -3.49 16 18 N -0.41 -6.21 3.54 -56.75 -0.20 -6.41 16 19 C 0.35 4.29 3.54 -4.00 -0.01 4.28 16 20 H 0.09 0.90 7.60 -51.93 -0.39 0.51 16 21 C -0.16 -1.65 5.74 -26.59 -0.15 -1.80 16 22 C -0.12 -0.87 6.03 -26.54 -0.16 -1.03 16 23 C -0.16 -1.06 6.14 -26.59 -0.16 -1.22 16 24 C 0.07 0.54 6.84 37.20 0.25 0.79 16 25 O -0.38 -4.73 10.54 -35.23 -0.37 -5.10 16 26 C -0.05 -0.77 9.68 -39.58 -0.38 -1.15 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 31 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 32 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 33 H 0.12 1.40 7.74 -52.49 -0.41 0.99 16 34 H 0.19 2.04 8.06 -52.48 -0.42 1.62 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.13 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -33.11 356.47 -9.83 -42.94 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -6.68 Total: -1.66 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -4.06 Total: -22.01 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.93 Total: -36.04 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.37 Total: -5.10 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.11 -9.83 -42.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.009 kcal (2) G-P(sol) polarization free energy of solvation -33.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds