Wall clock time and date at job start Fri Apr 10 2020 20:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47250 * 240.00484 * 3 2 1 5 5 H 1.48509 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47439 * 120.00493 * 3 2 1 7 7 C 1.37873 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99370 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00394 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47084 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46707 * 179.97438 * 10 9 7 12 12 C 1.38963 * 119.68674 * 270.02069 * 11 10 9 13 13 C 1.36590 * 120.81391 * 180.02562 * 12 11 10 14 14 C 1.39288 * 119.85349 * 359.95457 * 13 12 11 15 15 C 1.40814 * 119.41560 * 0.04464 * 14 13 12 16 16 C 1.45926 * 106.31823 * 179.97438 * 15 14 13 17 17 N 1.30242 * 107.78648 * 359.97438 * 16 15 14 18 18 N 1.37039 * 133.85180 * 180.02562 * 14 13 12 19 19 C 1.46503 * 125.45947 * 0.02562 * 18 14 13 20 20 H 1.09006 * 109.47714 * 344.96843 * 19 18 14 21 21 C 1.53086 * 109.48164 * 104.99344 * 19 18 14 22 22 C 1.53179 * 109.16245 * 177.59009 * 21 19 18 23 23 C 1.53187 * 109.03511 * 303.02253 * 22 21 19 24 24 C 1.53087 * 109.16292 * 56.98076 * 23 22 21 25 25 O 1.42900 * 109.41504 * 302.38827 * 24 23 22 26 26 C 1.36469 * 119.68544 * 90.00108 * 11 10 9 27 27 H 0.96997 * 119.99811 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47294 * 60.00004 * 9 7 2 29 29 H 1.09006 * 109.46791 * 300.00530 * 9 7 2 30 30 H 1.09003 * 109.47425 * 60.00189 * 10 9 7 31 31 H 1.08993 * 109.47289 * 299.99482 * 10 9 7 32 32 H 1.08002 * 119.59084 * 359.97438 * 12 11 10 33 33 H 1.08001 * 120.07490 * 179.97438 * 13 12 11 34 34 H 1.08006 * 126.11086 * 179.73904 * 16 15 14 35 35 H 1.08998 * 109.52466 * 297.49361 * 21 19 18 36 36 H 1.08999 * 109.51972 * 57.68941 * 21 19 18 37 37 H 1.08998 * 109.54206 * 62.88548 * 22 21 19 38 38 H 1.08996 * 109.54629 * 183.15622 * 22 21 19 39 39 H 1.09004 * 109.51842 * 176.88621 * 23 22 21 40 40 H 1.08995 * 109.52081 * 297.01081 * 23 22 21 41 41 H 1.09003 * 109.48179 * 62.37113 * 24 23 22 42 42 H 1.08994 * 109.47953 * 182.39570 * 24 23 22 43 43 H 1.08008 * 120.17617 * 359.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9671 0.0001 12 6 1.1478 -5.5626 1.2076 13 6 0.4654 -6.7455 1.2351 14 6 0.1065 -7.3668 0.0412 15 6 0.4543 -6.7649 -1.1834 16 6 -0.0532 -7.6446 -2.2313 17 7 -0.6365 -8.6559 -1.6539 18 7 -0.5616 -8.5238 -0.2635 19 6 -1.1089 -9.4710 0.7110 20 1 -0.6840 -9.2675 1.6939 21 6 -2.6310 -9.3190 0.7713 22 6 -3.2013 -10.3530 1.7471 23 6 -2.7742 -11.7536 1.2968 24 6 -1.2466 -11.8114 1.2162 25 8 -0.7799 -10.8045 0.3161 26 6 1.1536 -5.5528 -1.1852 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5568 -0.8903 29 1 0.6247 -2.5570 0.8897 30 1 2.8721 -3.6043 0.8895 31 1 2.8720 -3.6043 -0.8905 32 1 1.4241 -5.0845 2.1358 33 1 0.2044 -7.1980 2.1804 34 1 0.0354 -7.4838 -3.2956 35 1 -2.8836 -8.3159 1.1149 36 1 -3.0530 -9.4825 -0.2203 37 1 -2.8178 -10.1593 2.7488 38 1 -4.2893 -10.2878 1.7527 39 1 -3.1293 -12.4914 2.0163 40 1 -3.2000 -11.9666 0.3164 41 1 -0.8235 -11.6387 2.2058 42 1 -0.9386 -12.7927 0.8554 43 1 1.4240 -5.0832 -2.1195 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:41 Heat of formation + Delta-G solvation = 7.170013 kcal Electronic energy + Delta-G solvation = -23505.699827 eV Core-core repulsion = 20129.658782 eV Total energy + Delta-G solvation = -3376.041045 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.32005 -40.34362 -38.66541 -35.59709 -34.80364 -34.36767 -33.49354 -31.51310 -30.64162 -29.60662 -26.76126 -25.87452 -24.75246 -24.04808 -23.39064 -21.99694 -21.54625 -20.98929 -18.62817 -18.49595 -17.70292 -17.14930 -16.68727 -16.50264 -16.22755 -16.07868 -15.59997 -15.45043 -14.91907 -14.82800 -14.51261 -14.35172 -14.26423 -13.90397 -13.78596 -13.53349 -13.10565 -12.78067 -12.69045 -12.47588 -12.38474 -12.28406 -12.07437 -11.93278 -11.88798 -11.54845 -11.52131 -11.48614 -11.17869 -11.04666 -10.53410 -10.50584 -9.58560 -8.75283 -8.15252 -6.27039 0.00928 0.53293 1.18545 1.43048 1.45923 1.53631 1.54456 2.44133 2.62914 2.85253 3.17391 3.48342 3.51550 3.57912 3.78691 3.83412 3.89999 3.93822 4.05309 4.06438 4.25736 4.37509 4.48441 4.51280 4.58599 4.68569 4.76909 4.77868 4.87664 4.91939 4.96459 5.01027 5.05383 5.09294 5.23945 5.27390 5.36853 5.51309 5.56306 5.61688 5.74752 5.90033 5.94575 5.98287 6.23187 6.28545 6.65277 6.90667 7.42199 8.95689 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.030601 B = 0.002678 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.783228 B =10451.690075 C =10717.605209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.036 3.964 10 C -0.059 4.059 11 C -0.116 4.116 12 C -0.067 4.067 13 C -0.141 4.141 14 C 0.108 3.892 15 C -0.190 4.190 16 C 0.073 3.927 17 N -0.266 5.266 18 N -0.410 5.410 19 C 0.344 3.656 20 H 0.103 0.897 21 C -0.155 4.155 22 C -0.116 4.116 23 C -0.155 4.155 24 C 0.060 3.940 25 O -0.409 6.409 26 C -0.049 4.049 27 H 0.262 0.738 28 H -0.012 1.012 29 H -0.010 1.010 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.227 0.773 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.112 0.888 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.741 -24.071 4.329 24.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.001 4.001 10 C -0.096 4.096 11 C -0.118 4.118 12 C -0.087 4.087 13 C -0.163 4.163 14 C -0.005 4.005 15 C -0.198 4.198 16 C -0.124 4.124 17 N -0.078 5.078 18 N -0.202 5.202 19 C 0.204 3.796 20 H 0.120 0.880 21 C -0.194 4.194 22 C -0.153 4.153 23 C -0.192 4.192 24 C -0.017 4.017 25 O -0.328 6.328 26 C -0.069 4.069 27 H 0.071 0.929 28 H 0.007 0.993 29 H 0.009 0.991 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.159 0.841 33 H 0.167 0.833 34 H 0.243 0.757 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.123 0.877 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.130 0.870 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.491 -25.262 4.105 25.985 hybrid contribution 0.371 1.905 0.053 1.942 sum -4.120 -23.357 4.158 24.080 Atomic orbital electron populations 1.70110 1.07865 1.27716 1.51819 1.25981 0.95706 1.03339 0.94849 0.85524 0.78253 0.78156 0.79257 1.19136 1.21135 1.19044 1.21713 0.93692 0.92238 1.50313 0.91809 1.18930 0.94056 0.92341 0.94759 1.20494 0.97050 0.90210 1.01872 1.19770 1.01449 0.97148 0.93393 1.20880 0.95702 0.93783 0.98371 1.19972 1.03913 0.97042 0.95367 1.18971 0.96358 0.88663 0.96489 1.20137 1.07886 0.99065 0.92705 1.25660 0.95851 0.90040 1.00890 1.76539 1.20007 1.22434 0.88793 1.48351 1.50388 1.18233 1.03231 1.21844 0.92842 0.77955 0.86983 0.87974 1.22450 0.93739 1.01481 1.01685 1.21627 1.02089 0.93162 0.98464 1.22224 0.95886 0.97998 1.03096 1.22924 0.94338 0.90758 0.93635 1.87896 1.78608 1.14585 1.51678 1.20360 0.95555 0.92350 0.98675 0.92893 0.99333 0.99124 0.91498 0.91790 0.84057 0.83346 0.75701 0.90720 0.92017 0.89748 0.89639 0.87699 0.91856 0.91077 0.87015 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 9 C 0.04 1.91 4.95 29.85 0.15 2.06 16 10 C -0.06 -2.40 5.26 29.85 0.16 -2.24 16 11 C -0.12 -4.20 5.10 -20.10 -0.10 -4.30 16 12 C -0.07 -2.13 9.60 22.06 0.21 -1.92 16 13 C -0.14 -4.03 9.81 22.14 0.22 -3.82 16 14 C 0.11 3.40 6.86 39.21 0.27 3.67 16 15 C -0.19 -6.20 6.37 -20.25 -0.13 -6.32 16 16 C 0.07 2.09 12.28 86.92 1.07 3.16 16 17 N -0.27 -8.40 12.31 -53.09 -0.65 -9.06 16 18 N -0.41 -12.27 3.54 -433.91 -1.54 -13.81 16 19 C 0.34 7.97 3.54 86.41 0.31 8.28 16 20 H 0.10 1.95 7.60 -2.38 -0.02 1.93 16 21 C -0.15 -3.05 5.74 30.68 0.18 -2.88 16 22 C -0.12 -1.41 6.03 30.72 0.19 -1.23 16 23 C -0.15 -1.70 6.14 30.69 0.19 -1.51 16 24 C 0.06 0.81 6.84 72.01 0.49 1.30 16 25 O -0.41 -9.70 10.54 -148.98 -1.57 -11.27 16 26 C -0.05 -1.67 9.68 22.27 0.22 -1.46 16 27 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 28 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 29 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 30 H 0.07 2.57 8.08 -2.39 -0.02 2.56 16 31 H 0.06 2.50 8.07 -2.39 -0.02 2.48 16 32 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 33 H 0.15 3.18 7.74 -2.91 -0.02 3.16 16 34 H 0.23 4.50 8.06 -2.91 -0.02 4.48 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 42 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -72.61 356.47 3.63 -68.98 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.98 Total: 13.23 kcal Atomic # 6 Polarization: -41.25 SS G_CDS: 4.10 Total: -37.15 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -1.91 Total: -79.89 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -1.57 Total: -11.27 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -72.61 3.63 -68.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.148 kcal (2) G-P(sol) polarization free energy of solvation -72.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds