Wall clock time and date at job start Fri Apr 10 2020 20:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86794 * 120.00283 * 2 1 4 4 H 1.48499 * 109.47652 * 270.00349 * 3 2 1 5 5 H 1.48501 * 109.46942 * 30.00164 * 3 2 1 6 6 H 1.48500 * 109.47063 * 149.99796 * 3 2 1 7 7 C 1.37874 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00133 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00238 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47480 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47087 * 180.02562 * 10 9 7 12 12 C 1.36505 * 120.17838 * 264.99510 * 11 10 9 13 13 C 1.38918 * 120.62828 * 179.72775 * 12 11 10 14 14 C 1.36634 * 120.81539 * 359.97438 * 13 12 11 15 15 C 1.39238 * 119.85143 * 0.02562 * 14 13 12 16 16 C 1.39898 * 120.18259 * 84.72159 * 11 10 9 17 17 C 1.45929 * 134.04209 * 0.30850 * 16 11 10 18 18 N 1.30240 * 107.79394 * 179.97438 * 17 16 11 19 19 N 1.37046 * 133.85755 * 179.97438 * 15 14 13 20 20 C 1.46498 * 125.45962 * 0.07928 * 19 15 14 21 21 H 1.09000 * 109.47840 * 14.97612 * 20 19 15 22 22 C 1.53088 * 109.48182 * 254.94309 * 20 19 15 23 23 C 1.53181 * 109.16632 * 182.40575 * 22 20 19 24 24 C 1.53183 * 109.03142 * 56.98033 * 23 22 20 25 25 C 1.53093 * 109.16434 * 303.01935 * 24 23 22 26 26 O 1.42898 * 109.48154 * 134.99873 * 20 19 15 27 27 H 0.97001 * 119.99348 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47651 * 59.99768 * 9 7 2 29 29 H 1.09004 * 109.46917 * 299.99497 * 9 7 2 30 30 H 1.08992 * 109.47206 * 59.99515 * 10 9 7 31 31 H 1.09004 * 109.46571 * 299.99630 * 10 9 7 32 32 H 1.07999 * 119.68180 * 359.70579 * 12 11 10 33 33 H 1.08003 * 119.59178 * 180.02562 * 13 12 11 34 34 H 1.07999 * 120.07321 * 180.02562 * 14 13 12 35 35 H 1.08002 * 126.10168 * 359.97021 * 17 16 11 36 36 H 1.09003 * 109.52379 * 302.31548 * 22 20 19 37 37 H 1.08998 * 109.52427 * 62.50286 * 22 20 19 38 38 H 1.08997 * 109.54137 * 297.11613 * 23 22 20 39 39 H 1.09001 * 109.54442 * 176.84605 * 23 22 20 40 40 H 1.09004 * 109.51872 * 183.11161 * 24 23 22 41 41 H 1.09000 * 109.52184 * 62.92679 * 24 23 22 42 42 H 1.08997 * 109.47820 * 297.63161 * 25 24 23 43 43 H 1.08994 * 109.47765 * 177.59168 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0465 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6367 -0.0014 11 6 5.5285 -2.6367 -0.0001 12 6 6.2157 -2.7382 -1.1753 13 6 7.6048 -2.7334 -1.1855 14 6 8.3130 -2.6268 -0.0219 15 6 7.6394 -2.5218 1.1922 16 6 6.2309 -2.5270 1.2048 17 6 5.8331 -2.4052 2.6035 18 7 6.9177 -2.3373 3.3213 19 7 8.0450 -2.4045 2.4960 20 6 9.4363 -2.3568 2.9523 21 1 10.0909 -2.1617 2.1029 22 6 9.8112 -3.6977 3.5886 23 6 11.2470 -3.6198 4.1168 24 6 11.3522 -2.4564 5.1077 25 6 10.9178 -1.1633 4.4127 26 8 9.5855 -1.3144 3.9183 27 1 -0.4849 0.8401 0.0004 28 1 3.8746 -0.6809 0.8905 29 1 3.8752 -0.6798 -0.8895 30 1 3.6585 -3.1495 -0.8919 31 1 3.6578 -3.1514 0.8880 32 1 5.6742 -2.8232 -2.1058 33 1 8.1315 -2.8142 -2.1249 34 1 9.3927 -2.6240 -0.0438 35 1 4.8200 -2.3764 2.9767 36 1 9.1311 -3.9127 4.4128 37 1 9.7405 -4.4880 2.8413 38 1 11.9326 -3.4542 3.2858 39 1 11.5012 -4.5522 4.6208 40 1 12.3836 -2.3589 5.4468 41 1 10.7032 -2.6462 5.9626 42 1 11.5919 -0.9528 3.5824 43 1 10.9499 -0.3392 5.1253 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:44 Heat of formation + Delta-G solvation = 30.131098 kcal Electronic energy + Delta-G solvation = -23978.830574 eV Core-core repulsion = 20603.785195 eV Total energy + Delta-G solvation = -3375.045378 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.20086 -39.53599 -37.21557 -34.33906 -34.08224 -33.10666 -31.98974 -30.13396 -29.29647 -28.67493 -25.32827 -25.07861 -23.97517 -22.41494 -21.85924 -21.09052 -20.51284 -19.52616 -17.30333 -16.92828 -16.62151 -16.20292 -15.95051 -15.27372 -15.04090 -14.87048 -14.61940 -14.26017 -14.04117 -13.50951 -13.28734 -13.10249 -12.99867 -12.76493 -12.60897 -11.96507 -11.82885 -11.72373 -11.61486 -11.45505 -11.34905 -10.95202 -10.92407 -10.85244 -10.52619 -10.27907 -10.00868 -9.84281 -9.70748 -9.41949 -9.16062 -8.51192 -8.35842 -7.62096 -6.02178 -4.00296 1.19314 1.72550 2.22056 2.74842 3.34537 3.42246 3.48610 3.49843 4.03370 4.31011 4.35351 4.37998 4.48809 4.48898 4.53629 4.75159 4.90554 4.98443 5.03936 5.18702 5.20397 5.27273 5.32690 5.35400 5.43678 5.47383 5.57525 5.59911 5.66341 5.83614 5.86684 6.00007 6.17029 6.23299 6.47224 6.56439 6.65026 6.75242 6.80092 6.95172 7.12958 7.26253 7.32523 7.46485 7.80553 7.85513 8.54964 9.02649 9.60745 11.11071 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.020491 B = 0.003564 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.114916 B = 7853.996304 C = 8454.817395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.520 4.520 8 H 0.074 0.926 9 C -0.004 4.004 10 C -0.074 4.074 11 C 0.022 3.978 12 C -0.170 4.170 13 C -0.061 4.061 14 C -0.166 4.166 15 C 0.132 3.868 16 C -0.172 4.172 17 C 0.087 3.913 18 N -0.247 5.247 19 N -0.409 5.409 20 C 0.353 3.647 21 H 0.084 0.916 22 C -0.159 4.159 23 C -0.119 4.119 24 C -0.160 4.160 25 C 0.068 3.932 26 O -0.379 6.379 27 H 0.263 0.737 28 H 0.018 0.982 29 H 0.013 0.987 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.115 0.885 35 H 0.200 0.800 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.524 -7.279 5.204 27.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.092 0.908 9 C -0.042 4.042 10 C -0.112 4.112 11 C 0.019 3.981 12 C -0.190 4.190 13 C -0.082 4.082 14 C -0.188 4.188 15 C 0.020 3.980 16 C -0.179 4.179 17 C -0.112 4.112 18 N -0.057 5.057 19 N -0.200 5.200 20 C 0.212 3.788 21 H 0.102 0.898 22 C -0.198 4.198 23 C -0.157 4.157 24 C -0.198 4.198 25 C -0.009 4.009 26 O -0.296 6.296 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.031 0.969 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.133 0.867 35 H 0.216 0.784 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 25.870 -6.918 6.535 27.565 hybrid contribution 0.330 0.830 -0.860 1.240 sum 26.199 -6.088 5.675 27.490 Atomic orbital electron populations 1.69916 1.06267 1.26869 1.51180 1.24989 0.94678 0.99071 0.94527 0.86834 0.80531 0.83771 0.78570 1.20288 1.21388 1.18894 1.21124 0.89277 0.94517 1.50877 0.90836 1.19532 0.96910 0.91014 0.96698 1.20699 0.87251 1.00713 1.02501 1.19686 0.97266 0.90810 0.90314 1.20623 0.93722 1.06667 0.97960 1.20652 0.94251 0.96362 0.96897 1.19615 0.98862 1.10805 0.89563 1.18721 0.94056 0.99706 0.85537 1.19791 0.91522 1.12393 0.94222 1.25286 0.98141 0.97693 0.90034 1.76668 0.92005 1.18165 1.18855 1.48111 1.04181 1.65639 1.02111 1.21474 0.78390 0.88133 0.90827 0.89815 1.22499 0.97768 0.97087 1.02458 1.21598 0.95718 0.99312 0.99099 1.22252 1.02461 0.95501 0.99538 1.22618 0.82604 0.97805 0.97877 1.87971 1.29319 1.53281 1.59068 0.92746 0.96343 0.96883 0.91203 0.91251 0.85514 0.85749 0.86656 0.78381 0.89737 0.90327 0.91514 0.90675 0.90378 0.90545 0.92900 0.88110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 7 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C 0.00 -0.10 4.02 -27.88 -0.11 -0.21 16 10 C -0.07 -1.45 5.21 -27.88 -0.15 -1.60 16 11 C 0.02 0.38 5.13 -104.63 -0.54 -0.15 16 12 C -0.17 -2.61 9.60 -39.96 -0.38 -3.00 16 13 C -0.06 -0.80 9.96 -39.91 -0.40 -1.20 16 14 C -0.17 -2.25 9.81 -39.79 -0.39 -2.64 16 15 C 0.13 2.14 6.86 -84.17 -0.58 1.56 16 16 C -0.17 -3.04 6.14 -105.21 -0.65 -3.69 16 17 C 0.09 1.50 12.09 -15.15 -0.18 1.32 16 18 N -0.25 -4.33 12.31 31.87 0.39 -3.94 16 19 N -0.41 -6.49 3.54 -56.75 -0.20 -6.69 16 20 C 0.35 4.36 3.54 -4.00 -0.01 4.35 16 21 H 0.08 0.88 7.60 -51.93 -0.39 0.48 16 22 C -0.16 -1.58 5.74 -26.59 -0.15 -1.73 16 23 C -0.12 -0.82 6.03 -26.54 -0.16 -0.98 16 24 C -0.16 -1.08 6.14 -26.59 -0.16 -1.25 16 25 C 0.07 0.57 6.84 37.21 0.25 0.82 16 26 O -0.38 -5.00 10.55 -35.23 -0.37 -5.37 16 27 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 29 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 30 H 0.07 1.31 8.05 -51.93 -0.42 0.90 16 31 H 0.07 1.32 8.05 -51.93 -0.42 0.90 16 32 H 0.13 1.77 8.05 -52.49 -0.42 1.35 16 33 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.12 1.22 7.74 -52.49 -0.41 0.81 16 35 H 0.20 3.05 8.06 -52.49 -0.42 2.63 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 352.65 15.07 5.31 5.31 Total: -1.00 -33.73 352.65 -9.44 -43.17 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.64 Total: -1.35 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -4.04 Total: -21.49 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.96 Total: -37.76 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.37 Total: -5.37 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.73 -9.44 -43.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.298 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds