Wall clock time and date at job start Fri Apr 10 2020 20:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86794 * 120.00283 * 2 1 4 4 H 1.48499 * 109.47652 * 270.00349 * 3 2 1 5 5 H 1.48501 * 109.46942 * 30.00164 * 3 2 1 6 6 H 1.48500 * 109.47063 * 149.99796 * 3 2 1 7 7 C 1.37874 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00133 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00238 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47480 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47087 * 180.02562 * 10 9 7 12 12 C 1.36505 * 120.17838 * 264.99510 * 11 10 9 13 13 C 1.38918 * 120.62828 * 179.72775 * 12 11 10 14 14 C 1.36634 * 120.81539 * 359.97438 * 13 12 11 15 15 C 1.39238 * 119.85143 * 0.02562 * 14 13 12 16 16 C 1.39898 * 120.18259 * 84.72159 * 11 10 9 17 17 C 1.45929 * 134.04209 * 0.30850 * 16 11 10 18 18 N 1.30240 * 107.79394 * 179.97438 * 17 16 11 19 19 N 1.37046 * 133.85755 * 179.97438 * 15 14 13 20 20 C 1.46498 * 125.45962 * 0.07928 * 19 15 14 21 21 H 1.09000 * 109.47840 * 14.97612 * 20 19 15 22 22 C 1.53088 * 109.48182 * 254.94309 * 20 19 15 23 23 C 1.53181 * 109.16632 * 182.40575 * 22 20 19 24 24 C 1.53183 * 109.03142 * 56.98033 * 23 22 20 25 25 C 1.53093 * 109.16434 * 303.01935 * 24 23 22 26 26 O 1.42898 * 109.48154 * 134.99873 * 20 19 15 27 27 H 0.97001 * 119.99348 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47651 * 59.99768 * 9 7 2 29 29 H 1.09004 * 109.46917 * 299.99497 * 9 7 2 30 30 H 1.08992 * 109.47206 * 59.99515 * 10 9 7 31 31 H 1.09004 * 109.46571 * 299.99630 * 10 9 7 32 32 H 1.07999 * 119.68180 * 359.70579 * 12 11 10 33 33 H 1.08003 * 119.59178 * 180.02562 * 13 12 11 34 34 H 1.07999 * 120.07321 * 180.02562 * 14 13 12 35 35 H 1.08002 * 126.10168 * 359.97021 * 17 16 11 36 36 H 1.09003 * 109.52379 * 302.31548 * 22 20 19 37 37 H 1.08998 * 109.52427 * 62.50286 * 22 20 19 38 38 H 1.08997 * 109.54137 * 297.11613 * 23 22 20 39 39 H 1.09001 * 109.54442 * 176.84605 * 23 22 20 40 40 H 1.09004 * 109.51872 * 183.11161 * 24 23 22 41 41 H 1.09000 * 109.52184 * 62.92679 * 24 23 22 42 42 H 1.08997 * 109.47820 * 297.63161 * 25 24 23 43 43 H 1.08994 * 109.47765 * 177.59168 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0465 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6367 -0.0014 11 6 5.5285 -2.6367 -0.0001 12 6 6.2157 -2.7382 -1.1753 13 6 7.6048 -2.7334 -1.1855 14 6 8.3130 -2.6268 -0.0219 15 6 7.6394 -2.5218 1.1922 16 6 6.2309 -2.5270 1.2048 17 6 5.8331 -2.4052 2.6035 18 7 6.9177 -2.3373 3.3213 19 7 8.0450 -2.4045 2.4960 20 6 9.4363 -2.3568 2.9523 21 1 10.0909 -2.1617 2.1029 22 6 9.8112 -3.6977 3.5886 23 6 11.2470 -3.6198 4.1168 24 6 11.3522 -2.4564 5.1077 25 6 10.9178 -1.1633 4.4127 26 8 9.5855 -1.3144 3.9183 27 1 -0.4849 0.8401 0.0004 28 1 3.8746 -0.6809 0.8905 29 1 3.8752 -0.6798 -0.8895 30 1 3.6585 -3.1495 -0.8919 31 1 3.6578 -3.1514 0.8880 32 1 5.6742 -2.8232 -2.1058 33 1 8.1315 -2.8142 -2.1249 34 1 9.3927 -2.6240 -0.0438 35 1 4.8200 -2.3764 2.9767 36 1 9.1311 -3.9127 4.4128 37 1 9.7405 -4.4880 2.8413 38 1 11.9326 -3.4542 3.2858 39 1 11.5012 -4.5522 4.6208 40 1 12.3836 -2.3589 5.4468 41 1 10.7032 -2.6462 5.9626 42 1 11.5919 -0.9528 3.5824 43 1 10.9499 -0.3392 5.1253 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:43 Heat of formation + Delta-G solvation = 9.711613 kcal Electronic energy + Delta-G solvation = -23979.716029 eV Core-core repulsion = 20603.785195 eV Total energy + Delta-G solvation = -3375.930833 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.35149 -40.35533 -38.41511 -35.95670 -34.80378 -34.52161 -33.57640 -31.32364 -30.68124 -29.80464 -26.98723 -25.92724 -24.76563 -23.78911 -23.01827 -22.57417 -21.43718 -20.70203 -19.02271 -18.15803 -17.92084 -17.15214 -16.84648 -16.38304 -16.29485 -16.04551 -15.75909 -15.46881 -14.98463 -14.88343 -14.65495 -14.46529 -14.27656 -13.97602 -13.77378 -13.49184 -12.98140 -12.89154 -12.69897 -12.68550 -12.33400 -12.24511 -11.99774 -11.93938 -11.83585 -11.64214 -11.55444 -11.47413 -11.24351 -11.02871 -10.75304 -10.50374 -9.56374 -8.79453 -8.28815 -6.31523 0.01229 0.55810 1.20984 1.33430 1.36312 1.48211 1.52028 2.35559 2.63061 2.86649 3.06945 3.47429 3.53171 3.59596 3.78839 3.83699 3.90441 3.95011 4.02770 4.11365 4.32933 4.36779 4.41200 4.46352 4.53830 4.69312 4.73099 4.77244 4.81174 4.86983 4.92456 4.98021 5.03852 5.07273 5.15962 5.28173 5.39858 5.43188 5.47106 5.56101 5.66407 5.75501 5.84844 6.03131 6.26386 6.29752 6.64454 6.76225 7.33021 8.87811 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.020491 B = 0.003564 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.114916 B = 7853.996304 C = 8454.817395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.010 3.990 3 Si 0.942 3.058 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.258 1.258 7 C -0.526 4.526 8 H 0.040 0.960 9 C 0.004 3.996 10 C -0.063 4.063 11 C -0.005 4.005 12 C -0.170 4.170 13 C -0.053 4.053 14 C -0.155 4.155 15 C 0.119 3.881 16 C -0.197 4.197 17 C 0.067 3.933 18 N -0.268 5.268 19 N -0.410 5.410 20 C 0.342 3.658 21 H 0.109 0.891 22 C -0.153 4.153 23 C -0.113 4.113 24 C -0.156 4.156 25 C 0.059 3.941 26 O -0.414 6.414 27 H 0.266 0.734 28 H 0.011 0.989 29 H 0.016 0.984 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.139 0.861 33 H 0.168 0.832 34 H 0.154 0.846 35 H 0.200 0.800 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.881 -6.958 4.013 30.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.187 4.187 3 Si 0.766 3.234 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.564 4.564 8 H 0.058 0.942 9 C -0.034 4.034 10 C -0.101 4.101 11 C -0.008 4.008 12 C -0.189 4.189 13 C -0.074 4.074 14 C -0.177 4.177 15 C 0.006 3.994 16 C -0.205 4.205 17 C -0.130 4.130 18 N -0.080 5.080 19 N -0.202 5.202 20 C 0.202 3.798 21 H 0.127 0.873 22 C -0.192 4.192 23 C -0.151 4.151 24 C -0.193 4.193 25 C -0.017 4.017 26 O -0.333 6.333 27 H 0.075 0.925 28 H 0.029 0.971 29 H 0.034 0.966 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.157 0.843 33 H 0.185 0.815 34 H 0.171 0.829 35 H 0.217 0.783 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.124 0.876 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 30.252 -6.610 5.353 31.425 hybrid contribution -0.968 0.656 -0.472 1.261 sum 29.284 -5.954 4.881 30.279 Atomic orbital electron populations 1.70055 1.08038 1.28019 1.52858 1.25875 0.95478 1.03004 0.94335 0.85774 0.79212 0.79119 0.79270 1.18814 1.20900 1.18254 1.21469 0.91738 0.93285 1.49914 0.94172 1.19392 0.93793 0.94003 0.96191 1.20437 0.89483 0.97815 1.02323 1.19479 0.95667 0.94099 0.91516 1.20918 0.95214 1.05383 0.97407 1.21089 0.93195 0.94485 0.98582 1.20115 1.00814 1.08485 0.88299 1.19097 0.93674 1.00068 0.86545 1.19978 0.92844 1.13541 0.94101 1.25407 0.98421 0.98603 0.90616 1.76569 0.92838 1.18548 1.20027 1.48457 1.04893 1.64848 1.01961 1.21945 0.76849 0.89086 0.91876 0.87347 1.22450 0.99282 0.95948 1.01505 1.21620 0.93752 0.99911 0.99830 1.22233 1.03587 0.94703 0.98807 1.22920 0.81040 0.98872 0.98854 1.87923 1.32189 1.53698 1.59537 0.92503 0.97093 0.96567 0.90967 0.91948 0.84335 0.81455 0.82880 0.78287 0.92485 0.89923 0.89313 0.89481 0.87637 0.92233 0.90762 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 2 C 0.01 0.60 5.47 84.65 0.46 1.06 16 3 Si 0.94 46.06 27.47 68.60 1.88 47.95 16 4 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.26 -12.29 6.54 99.48 0.65 -11.63 16 7 C -0.53 -30.66 9.66 25.60 0.25 -30.41 16 8 H 0.04 2.53 7.99 -2.91 -0.02 2.51 16 9 C 0.00 0.18 4.02 29.85 0.12 0.30 16 10 C -0.06 -2.53 5.21 29.85 0.16 -2.37 16 11 C -0.01 -0.18 5.13 -19.87 -0.10 -0.28 16 12 C -0.17 -4.81 9.60 22.03 0.21 -4.60 16 13 C -0.05 -1.17 9.96 22.06 0.22 -0.95 16 14 C -0.16 -3.58 9.81 22.13 0.22 -3.37 16 15 C 0.12 3.66 6.86 39.21 0.27 3.93 16 16 C -0.20 -6.99 6.14 -20.24 -0.12 -7.11 16 17 C 0.07 2.43 12.09 86.92 1.05 3.48 16 18 N -0.27 -9.70 12.31 -53.09 -0.65 -10.36 16 19 N -0.41 -12.69 3.54 -433.94 -1.54 -14.23 16 20 C 0.34 7.83 3.54 86.41 0.31 8.14 16 21 H 0.11 1.88 7.60 -2.39 -0.02 1.86 16 22 C -0.15 -2.80 5.74 30.68 0.18 -2.62 16 23 C -0.11 -1.21 6.03 30.72 0.19 -1.03 16 24 C -0.16 -1.73 6.14 30.69 0.19 -1.54 16 25 C 0.06 0.85 6.84 72.01 0.49 1.35 16 26 O -0.41 -10.50 10.55 -148.98 -1.57 -12.07 16 27 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 28 H 0.01 0.53 7.20 -2.39 -0.02 0.52 16 29 H 0.02 0.76 7.57 -2.38 -0.02 0.74 16 30 H 0.07 2.77 8.05 -2.39 -0.02 2.76 16 31 H 0.06 2.51 8.05 -2.38 -0.02 2.49 16 32 H 0.14 3.51 8.05 -2.91 -0.02 3.49 16 33 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.15 2.34 7.74 -2.91 -0.02 2.32 16 35 H 0.20 6.69 8.06 -2.91 -0.02 6.67 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -75.97 352.65 3.43 -72.54 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.93 Total: 12.13 kcal Atomic # 6 Polarization: -40.10 SS G_CDS: 4.08 Total: -36.02 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -1.89 Total: -84.53 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -1.57 Total: -12.07 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.88 Total: 47.95 kcal Total: -75.97 3.43 -72.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.255 kcal (2) G-P(sol) polarization free energy of solvation -75.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds