Wall clock time and date at job start Fri Apr 10 2020 20:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47303 * 179.97438 * 10 9 7 12 12 C 1.36502 * 120.18376 * 265.00055 * 11 10 9 13 13 C 1.38914 * 120.63156 * 179.97438 * 12 11 10 14 14 C 1.36625 * 120.81392 * 359.96904 * 13 12 11 15 15 C 1.39246 * 119.85193 * 0.03060 * 14 13 12 16 16 C 1.39906 * 120.17889 * 84.71772 * 11 10 9 17 17 C 1.45929 * 134.04646 * 0.02716 * 16 11 10 18 18 N 1.30245 * 107.79156 * 179.97438 * 17 16 11 19 19 N 1.37046 * 133.84619 * 180.02562 * 15 14 13 20 20 C 1.46492 * 125.46527 * 359.95411 * 19 15 14 21 21 H 1.08998 * 109.48357 * 344.97654 * 20 19 15 22 22 C 1.53095 * 109.48194 * 104.99807 * 20 19 15 23 23 C 1.53178 * 109.16245 * 177.59111 * 22 20 19 24 24 C 1.53178 * 109.03796 * 303.02212 * 23 22 20 25 25 C 1.53084 * 109.16522 * 56.97998 * 24 23 22 26 26 O 1.42901 * 109.48241 * 224.94359 * 20 19 15 27 27 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 29 29 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 30 30 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 31 31 H 1.09004 * 109.47253 * 59.99496 * 10 9 7 32 32 H 1.08007 * 119.67973 * 359.97438 * 12 11 10 33 33 H 1.08006 * 119.59174 * 180.02562 * 13 12 11 34 34 H 1.08004 * 120.07735 * 180.02562 * 14 13 12 35 35 H 1.08002 * 126.10217 * 0.02562 * 17 16 11 36 36 H 1.08995 * 109.52420 * 297.50044 * 22 20 19 37 37 H 1.08999 * 109.51624 * 57.68633 * 22 20 19 38 38 H 1.08997 * 109.54297 * 62.88844 * 23 22 20 39 39 H 1.09002 * 109.53860 * 183.15603 * 23 22 20 40 40 H 1.08996 * 109.52342 * 176.89424 * 24 23 22 41 41 H 1.09008 * 109.52192 * 297.00889 * 24 23 22 42 42 H 1.08998 * 109.47991 * 62.37242 * 25 24 23 43 43 H 1.08996 * 109.48447 * 182.41244 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 6 5.5284 -2.6368 -0.0014 12 6 6.2146 -2.7385 -1.1770 13 6 7.6037 -2.7391 -1.1879 14 6 8.3128 -2.6373 -0.0245 15 6 7.6402 -2.5321 1.1902 16 6 6.2317 -2.5267 1.2030 17 6 5.8351 -2.3992 2.6015 18 7 6.9204 -2.3340 3.3186 19 7 8.0470 -2.4180 2.4939 20 6 9.4387 -2.3776 2.9495 21 1 10.0941 -2.7149 2.1466 22 6 9.8066 -0.9438 3.3404 23 6 11.2429 -0.9204 3.8721 24 6 11.3550 -1.8914 5.0515 25 6 10.9274 -3.2885 4.5946 26 8 9.5941 -3.2337 4.0831 27 1 -0.4850 0.8401 0.0004 28 1 3.8751 -0.6798 -0.8895 29 1 3.8745 -0.6809 0.8904 30 1 3.6577 -3.1515 0.8880 31 1 3.6583 -3.1496 -0.8920 32 1 5.6723 -2.8194 -2.1075 33 1 8.1297 -2.8200 -2.1278 34 1 9.3926 -2.6385 -0.0468 35 1 4.8223 -2.3659 2.9753 36 1 9.7311 -0.2972 2.4662 37 1 9.1255 -0.5914 4.1151 38 1 11.9291 -1.2254 3.0821 39 1 11.4922 0.0874 4.2045 40 1 12.3869 -1.9223 5.4010 41 1 10.7061 -1.5574 5.8612 42 1 11.6023 -3.6378 3.8132 43 1 10.9642 -3.9748 5.4405 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:47 Heat of formation + Delta-G solvation = 30.006639 kcal Electronic energy + Delta-G solvation = -23991.080932 eV Core-core repulsion = 20616.030157 eV Total energy + Delta-G solvation = -3375.050775 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20302 -39.53808 -37.21717 -34.34228 -34.07816 -33.11000 -31.99505 -30.13433 -29.29867 -28.67572 -25.32930 -25.07770 -23.97610 -22.41724 -21.86051 -21.09353 -20.50252 -19.53501 -17.30628 -16.93190 -16.61846 -16.20341 -15.95347 -15.27778 -15.04471 -14.86385 -14.64037 -14.24801 -14.02978 -13.51521 -13.29609 -13.09950 -12.99620 -12.76479 -12.60465 -11.96553 -11.85144 -11.73052 -11.59788 -11.43781 -11.35759 -10.97275 -10.91980 -10.85957 -10.52703 -10.24543 -10.02690 -9.89000 -9.68096 -9.43529 -9.16885 -8.52086 -8.36138 -7.62043 -6.02922 -4.01012 1.19278 1.72935 2.20917 2.74328 3.33439 3.40735 3.45807 3.49487 4.03367 4.32033 4.35631 4.39045 4.47504 4.49244 4.54055 4.75126 4.90381 4.98145 5.04199 5.18317 5.20270 5.27808 5.31853 5.36276 5.43803 5.48932 5.58003 5.60530 5.68424 5.83597 5.88529 6.00156 6.16849 6.23366 6.47212 6.56171 6.64374 6.74984 6.79505 6.95188 7.12699 7.25552 7.31911 7.45638 7.79688 7.85175 8.54343 9.02093 9.59852 11.10383 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.003589 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.170849 B = 7798.781590 C = 8324.030133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.288 1.288 7 C -0.520 4.520 8 H 0.074 0.926 9 C -0.004 4.004 10 C -0.075 4.075 11 C 0.022 3.978 12 C -0.170 4.170 13 C -0.061 4.061 14 C -0.166 4.166 15 C 0.132 3.868 16 C -0.172 4.172 17 C 0.087 3.913 18 N -0.247 5.247 19 N -0.409 5.409 20 C 0.354 3.646 21 H 0.085 0.915 22 C -0.161 4.161 23 C -0.119 4.119 24 C -0.160 4.160 25 C 0.069 3.931 26 O -0.379 6.379 27 H 0.263 0.737 28 H 0.017 0.983 29 H 0.013 0.987 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.115 0.885 35 H 0.200 0.800 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.520 -5.013 4.930 26.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.189 1.189 6 H -0.214 1.214 7 C -0.558 4.558 8 H 0.092 0.908 9 C -0.041 4.041 10 C -0.112 4.112 11 C 0.019 3.981 12 C -0.189 4.189 13 C -0.081 4.081 14 C -0.189 4.189 15 C 0.020 3.980 16 C -0.180 4.180 17 C -0.112 4.112 18 N -0.057 5.057 19 N -0.200 5.200 20 C 0.213 3.787 21 H 0.102 0.898 22 C -0.200 4.200 23 C -0.157 4.157 24 C -0.198 4.198 25 C -0.008 4.008 26 O -0.297 6.297 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.032 0.968 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.133 0.867 35 H 0.216 0.784 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 25.867 -4.896 6.275 27.064 hybrid contribution 0.325 1.073 -0.834 1.397 sum 26.192 -3.823 5.441 27.023 Atomic orbital electron populations 1.69913 1.06271 1.26864 1.51168 1.24992 0.94675 0.99062 0.94550 0.86830 0.80441 0.83785 0.78610 1.20269 1.18950 1.21409 1.21133 0.89287 0.94524 1.50860 0.90829 1.19529 0.96909 0.91016 0.96657 1.20702 0.87261 1.00703 1.02529 1.19684 0.97260 0.90792 0.90329 1.20623 0.93730 1.06636 0.97961 1.20650 0.94245 0.96346 0.96909 1.19616 0.98865 1.10809 0.89562 1.18719 0.94045 0.99619 0.85624 1.19790 0.91526 1.12409 0.94228 1.25289 0.98134 0.97745 0.90002 1.76672 0.92026 1.18256 1.18751 1.48095 1.04179 1.65656 1.02111 1.21464 0.78362 0.90494 0.88429 0.89772 1.22513 0.97801 0.96439 1.03229 1.21595 0.95701 1.00537 0.97887 1.22248 1.02477 0.95949 0.99091 1.22610 0.82567 0.96941 0.98724 1.87954 1.29357 1.65717 1.46685 0.92744 0.96438 0.96822 0.91257 0.91175 0.85515 0.85748 0.86654 0.78377 0.90271 0.89692 0.91517 0.90656 0.90388 0.90540 0.92913 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.52 -14.61 9.66 -34.44 -0.33 -14.94 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C 0.00 -0.09 4.02 -27.88 -0.11 -0.20 16 10 C -0.07 -1.46 5.20 -27.88 -0.15 -1.60 16 11 C 0.02 0.39 5.13 -104.63 -0.54 -0.15 16 12 C -0.17 -2.62 9.59 -39.96 -0.38 -3.00 16 13 C -0.06 -0.80 9.96 -39.91 -0.40 -1.20 16 14 C -0.17 -2.25 9.81 -39.79 -0.39 -2.64 16 15 C 0.13 2.13 6.86 -84.17 -0.58 1.56 16 16 C -0.17 -3.04 6.14 -105.21 -0.65 -3.68 16 17 C 0.09 1.50 12.09 -15.15 -0.18 1.31 16 18 N -0.25 -4.32 12.32 31.87 0.39 -3.93 16 19 N -0.41 -6.47 3.54 -56.75 -0.20 -6.67 16 20 C 0.35 4.36 3.54 -4.00 -0.01 4.35 16 21 H 0.08 0.87 7.60 -51.93 -0.39 0.47 16 22 C -0.16 -1.69 5.74 -26.59 -0.15 -1.84 16 23 C -0.12 -0.86 6.03 -26.55 -0.16 -1.02 16 24 C -0.16 -1.10 6.14 -26.60 -0.16 -1.26 16 25 C 0.07 0.55 6.84 37.20 0.25 0.81 16 26 O -0.38 -4.85 10.55 -35.23 -0.37 -5.22 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 29 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 30 H 0.07 1.32 8.06 -51.93 -0.42 0.90 16 31 H 0.07 1.32 8.05 -51.93 -0.42 0.91 16 32 H 0.13 1.78 8.05 -52.48 -0.42 1.35 16 33 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.12 1.21 7.74 -52.48 -0.41 0.81 16 35 H 0.20 3.04 8.06 -52.49 -0.42 2.62 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 352.66 15.07 5.31 5.31 Total: -1.00 -33.45 352.66 -9.44 -42.89 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.64 Total: -1.00 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -4.04 Total: -21.63 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.97 Total: -37.63 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.37 Total: -5.22 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.45 -9.44 -42.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.901 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds