Wall clock time and date at job start Fri Apr 10 2020 20:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47303 * 179.97438 * 10 9 7 12 12 C 1.36502 * 120.18376 * 265.00055 * 11 10 9 13 13 C 1.38914 * 120.63156 * 179.97438 * 12 11 10 14 14 C 1.36625 * 120.81392 * 359.96904 * 13 12 11 15 15 C 1.39246 * 119.85193 * 0.03060 * 14 13 12 16 16 C 1.39906 * 120.17889 * 84.71772 * 11 10 9 17 17 C 1.45929 * 134.04646 * 0.02716 * 16 11 10 18 18 N 1.30245 * 107.79156 * 179.97438 * 17 16 11 19 19 N 1.37046 * 133.84619 * 180.02562 * 15 14 13 20 20 C 1.46492 * 125.46527 * 359.95411 * 19 15 14 21 21 H 1.08998 * 109.48357 * 344.97654 * 20 19 15 22 22 C 1.53095 * 109.48194 * 104.99807 * 20 19 15 23 23 C 1.53178 * 109.16245 * 177.59111 * 22 20 19 24 24 C 1.53178 * 109.03796 * 303.02212 * 23 22 20 25 25 C 1.53084 * 109.16522 * 56.97998 * 24 23 22 26 26 O 1.42901 * 109.48241 * 224.94359 * 20 19 15 27 27 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 29 29 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 30 30 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 31 31 H 1.09004 * 109.47253 * 59.99496 * 10 9 7 32 32 H 1.08007 * 119.67973 * 359.97438 * 12 11 10 33 33 H 1.08006 * 119.59174 * 180.02562 * 13 12 11 34 34 H 1.08004 * 120.07735 * 180.02562 * 14 13 12 35 35 H 1.08002 * 126.10217 * 0.02562 * 17 16 11 36 36 H 1.08995 * 109.52420 * 297.50044 * 22 20 19 37 37 H 1.08999 * 109.51624 * 57.68633 * 22 20 19 38 38 H 1.08997 * 109.54297 * 62.88844 * 23 22 20 39 39 H 1.09002 * 109.53860 * 183.15603 * 23 22 20 40 40 H 1.08996 * 109.52342 * 176.89424 * 24 23 22 41 41 H 1.09008 * 109.52192 * 297.00889 * 24 23 22 42 42 H 1.08998 * 109.47991 * 62.37242 * 25 24 23 43 43 H 1.08996 * 109.48447 * 182.41244 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 6 5.5284 -2.6368 -0.0014 12 6 6.2146 -2.7385 -1.1770 13 6 7.6037 -2.7391 -1.1879 14 6 8.3128 -2.6373 -0.0245 15 6 7.6402 -2.5321 1.1902 16 6 6.2317 -2.5267 1.2030 17 6 5.8351 -2.3992 2.6015 18 7 6.9204 -2.3340 3.3186 19 7 8.0470 -2.4180 2.4939 20 6 9.4387 -2.3776 2.9495 21 1 10.0941 -2.7149 2.1466 22 6 9.8066 -0.9438 3.3404 23 6 11.2429 -0.9204 3.8721 24 6 11.3550 -1.8914 5.0515 25 6 10.9274 -3.2885 4.5946 26 8 9.5941 -3.2337 4.0831 27 1 -0.4850 0.8401 0.0004 28 1 3.8751 -0.6798 -0.8895 29 1 3.8745 -0.6809 0.8904 30 1 3.6577 -3.1515 0.8880 31 1 3.6583 -3.1496 -0.8920 32 1 5.6723 -2.8194 -2.1075 33 1 8.1297 -2.8200 -2.1278 34 1 9.3926 -2.6385 -0.0468 35 1 4.8223 -2.3659 2.9753 36 1 9.7311 -0.2972 2.4662 37 1 9.1255 -0.5914 4.1151 38 1 11.9291 -1.2254 3.0821 39 1 11.4922 0.0874 4.2045 40 1 12.3869 -1.9223 5.4010 41 1 10.7061 -1.5574 5.8612 42 1 11.6023 -3.6378 3.8132 43 1 10.9642 -3.9748 5.4405 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:46 Heat of formation + Delta-G solvation = 9.829922 kcal Electronic energy + Delta-G solvation = -23991.955860 eV Core-core repulsion = 20616.030157 eV Total energy + Delta-G solvation = -3375.925703 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.35217 -40.35358 -38.41498 -35.95451 -34.80611 -34.52127 -33.57612 -31.32276 -30.68052 -29.80493 -26.98607 -25.92494 -24.77148 -23.78785 -23.01914 -22.57172 -21.43633 -20.70714 -19.01807 -18.15552 -17.92023 -17.13995 -16.84859 -16.38294 -16.31567 -16.03139 -15.75301 -15.47873 -14.99487 -14.84948 -14.72695 -14.35318 -14.30156 -13.97007 -13.78215 -13.52562 -12.97122 -12.93184 -12.70163 -12.65415 -12.33005 -12.26217 -11.99085 -11.92359 -11.80876 -11.66785 -11.56950 -11.46740 -11.23080 -11.02209 -10.75335 -10.51008 -9.56391 -8.79374 -8.28252 -6.31203 0.01347 0.56120 1.20366 1.35217 1.35907 1.48316 1.51803 2.36079 2.63478 2.86468 3.07518 3.47396 3.53068 3.59120 3.78141 3.83433 3.90185 3.94758 4.02638 4.11148 4.33147 4.36742 4.41057 4.46242 4.53450 4.68552 4.73621 4.76834 4.81014 4.86913 4.91995 4.97831 5.03769 5.06942 5.15968 5.27676 5.40430 5.43405 5.47147 5.55813 5.66746 5.75483 5.84889 6.03012 6.26216 6.30165 6.64389 6.76578 7.33267 8.88427 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.003589 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.170849 B = 7798.781590 C = 8324.030133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.009 3.991 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.250 1.250 6 H -0.281 1.281 7 C -0.527 4.527 8 H 0.039 0.961 9 C 0.004 3.996 10 C -0.064 4.064 11 C -0.005 4.005 12 C -0.170 4.170 13 C -0.053 4.053 14 C -0.155 4.155 15 C 0.120 3.880 16 C -0.197 4.197 17 C 0.068 3.932 18 N -0.268 5.268 19 N -0.410 5.410 20 C 0.344 3.656 21 H 0.112 0.888 22 C -0.156 4.156 23 C -0.113 4.113 24 C -0.156 4.156 25 C 0.060 3.940 26 O -0.412 6.412 27 H 0.266 0.734 28 H 0.018 0.982 29 H 0.011 0.989 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.138 0.862 33 H 0.168 0.832 34 H 0.154 0.846 35 H 0.201 0.799 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.962 -4.524 3.804 30.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.188 4.188 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.174 1.174 6 H -0.207 1.207 7 C -0.565 4.565 8 H 0.057 0.943 9 C -0.033 4.033 10 C -0.101 4.101 11 C -0.007 4.007 12 C -0.190 4.190 13 C -0.074 4.074 14 C -0.177 4.177 15 C 0.007 3.993 16 C -0.204 4.204 17 C -0.130 4.130 18 N -0.080 5.080 19 N -0.202 5.202 20 C 0.204 3.796 21 H 0.129 0.871 22 C -0.195 4.195 23 C -0.151 4.151 24 C -0.194 4.194 25 C -0.016 4.016 26 O -0.331 6.331 27 H 0.075 0.925 28 H 0.037 0.963 29 H 0.029 0.971 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.156 0.844 33 H 0.185 0.815 34 H 0.171 0.829 35 H 0.217 0.783 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.124 0.876 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 30.336 -4.420 5.161 31.088 hybrid contribution -1.002 0.807 -0.461 1.366 sum 29.334 -3.613 4.700 29.927 Atomic orbital electron populations 1.70056 1.08108 1.28035 1.52845 1.25897 0.95490 1.03089 0.94308 0.85765 0.79560 0.79006 0.79000 1.19677 1.17376 1.20687 1.21479 0.91793 0.93255 1.49958 0.94309 1.19388 0.93726 0.93912 0.96272 1.20441 0.89500 0.97915 1.02249 1.19474 0.95647 0.94073 0.91537 1.20914 0.95235 1.05403 0.97403 1.21084 0.93175 0.94494 0.98604 1.20116 1.00825 1.08468 0.88293 1.19091 0.93663 0.99949 0.86635 1.19970 0.92835 1.13545 0.94096 1.25410 0.98417 0.98627 0.90558 1.76575 0.92857 1.18645 1.19920 1.48436 1.04890 1.64847 1.01982 1.21902 0.76860 0.91471 0.89340 0.87111 1.22474 0.99404 0.95286 1.02357 1.21616 0.93646 1.01312 0.98546 1.22232 1.03640 0.95058 0.98442 1.22919 0.81021 0.97975 0.99676 1.87914 1.32205 1.65964 1.47028 0.92514 0.96346 0.97068 0.92027 0.91072 0.84402 0.81474 0.82857 0.78259 0.90281 0.92663 0.89212 0.89747 0.87601 0.92320 0.90630 0.87337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.16 13.96 21.45 0.30 -59.87 16 2 C 0.01 0.54 5.47 84.66 0.46 1.00 16 3 Si 0.94 45.54 27.47 68.60 1.88 47.43 16 4 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 6 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 7 C -0.53 -30.60 9.66 25.60 0.25 -30.36 16 8 H 0.04 2.45 7.99 -2.91 -0.02 2.42 16 9 C 0.00 0.21 4.02 29.85 0.12 0.33 16 10 C -0.06 -2.55 5.20 29.85 0.16 -2.39 16 11 C 0.00 -0.17 5.13 -19.87 -0.10 -0.27 16 12 C -0.17 -4.84 9.59 22.03 0.21 -4.62 16 13 C -0.05 -1.17 9.96 22.05 0.22 -0.95 16 14 C -0.16 -3.57 9.81 22.13 0.22 -3.35 16 15 C 0.12 3.66 6.86 39.21 0.27 3.93 16 16 C -0.20 -6.95 6.14 -20.24 -0.12 -7.07 16 17 C 0.07 2.43 12.09 86.92 1.05 3.48 16 18 N -0.27 -9.66 12.32 -53.09 -0.65 -10.32 16 19 N -0.41 -12.63 3.54 -433.94 -1.54 -14.17 16 20 C 0.34 7.83 3.54 86.41 0.31 8.14 16 21 H 0.11 1.87 7.60 -2.39 -0.02 1.85 16 22 C -0.16 -3.04 5.74 30.69 0.18 -2.87 16 23 C -0.11 -1.30 6.03 30.71 0.19 -1.11 16 24 C -0.16 -1.74 6.14 30.68 0.19 -1.55 16 25 C 0.06 0.82 6.84 72.01 0.49 1.31 16 26 O -0.41 -10.05 10.55 -148.98 -1.57 -11.62 16 27 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 28 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 29 H 0.01 0.53 7.57 -2.39 -0.02 0.51 16 30 H 0.06 2.48 8.06 -2.39 -0.02 2.47 16 31 H 0.07 2.75 8.05 -2.38 -0.02 2.73 16 32 H 0.14 3.52 8.05 -2.91 -0.02 3.50 16 33 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 34 H 0.15 2.33 7.74 -2.91 -0.02 2.30 16 35 H 0.20 6.65 8.06 -2.91 -0.02 6.63 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -75.52 352.66 3.43 -72.09 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.93 Total: 12.82 kcal Atomic # 6 Polarization: -40.44 SS G_CDS: 4.08 Total: -36.36 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -1.89 Total: -84.35 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -1.57 Total: -11.62 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.43 kcal Total: -75.52 3.43 -72.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.924 kcal (2) G-P(sol) polarization free energy of solvation -75.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds