Wall clock time and date at job start Fri Apr 10 2020 20:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 120.00019 * 2 1 4 4 H 1.48492 * 109.47131 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47052 * 300.00210 * 3 2 1 6 6 H 1.48499 * 109.46812 * 59.99809 * 3 2 1 7 7 C 1.37876 * 120.00515 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00237 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99565 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46955 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46955 * 180.02562 * 10 9 7 12 12 C 1.38964 * 119.59243 * 90.00654 * 11 10 9 13 13 C 1.36469 * 120.63063 * 180.02562 * 12 11 10 14 14 C 1.39943 * 119.63200 * 0.22939 * 13 12 11 15 15 C 1.45932 * 134.02288 * 180.46146 * 14 13 12 16 16 N 1.30250 * 107.78299 * 179.49260 * 15 14 13 17 17 N 1.39871 * 110.08386 * 359.76156 * 16 15 14 18 18 C 1.46504 * 125.46065 * 180.02562 * 17 16 15 19 19 H 1.08998 * 109.47722 * 194.95459 * 18 17 16 20 20 C 1.53085 * 109.48200 * 74.91830 * 18 17 16 21 21 C 1.53173 * 109.16481 * 182.41025 * 20 18 17 22 22 C 1.53180 * 109.03720 * 56.97561 * 21 20 18 23 23 C 1.53091 * 109.16380 * 303.02410 * 22 21 20 24 24 O 1.42897 * 109.41449 * 57.60521 * 23 22 21 25 25 C 1.37040 * 109.08085 * 359.97438 * 17 16 15 26 26 C 1.36589 * 119.59140 * 269.97546 * 11 10 9 27 27 H 0.96993 * 120.00044 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46901 * 60.00383 * 9 7 2 29 29 H 1.08995 * 109.47435 * 300.00347 * 9 7 2 30 30 H 1.08995 * 109.47276 * 60.00420 * 10 9 7 31 31 H 1.09000 * 109.47310 * 299.99933 * 10 9 7 32 32 H 1.08002 * 119.68492 * 359.97438 * 12 11 10 33 33 H 1.08002 * 120.18015 * 179.97438 * 13 12 11 34 34 H 1.07993 * 126.11355 * 359.25792 * 15 14 13 35 35 H 1.09008 * 109.52081 * 302.31334 * 20 18 17 36 36 H 1.09001 * 109.52346 * 62.50127 * 20 18 17 37 37 H 1.09004 * 109.54448 * 297.10952 * 21 20 18 38 38 H 1.08999 * 109.54800 * 176.84309 * 21 20 18 39 39 H 1.09001 * 109.52516 * 183.11447 * 22 21 20 40 40 H 1.09006 * 109.52119 * 62.93112 * 22 21 20 41 41 H 1.09000 * 109.47950 * 297.62152 * 23 22 21 42 42 H 1.09002 * 109.47563 * 177.58762 * 23 22 21 43 43 H 1.07994 * 120.07775 * 0.03219 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9671 -0.0012 12 6 1.1493 -5.5611 -1.2098 13 6 0.4666 -6.7425 -1.2351 14 6 0.1045 -7.3583 -0.0318 15 6 -0.6000 -8.5912 0.3047 16 7 -0.6502 -8.6790 1.6033 17 7 -0.0141 -7.5770 2.1841 18 6 0.1255 -7.3370 3.6226 19 1 0.4173 -6.3005 3.7915 20 6 1.1972 -8.2690 4.1940 21 6 1.2948 -8.0547 5.7075 22 6 -0.0810 -8.2963 6.3362 23 6 -1.1033 -7.3632 5.6819 24 8 -1.1216 -7.5928 4.2717 25 6 0.4585 -6.7583 1.1920 26 6 1.1547 -5.5519 1.1863 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 2.8720 -3.6043 0.8894 31 1 2.8720 -3.6042 -0.8905 32 1 1.4252 -5.0829 -2.1380 33 1 0.2037 -7.1976 -2.1787 34 1 -1.0102 -9.3018 -0.3975 35 1 0.9257 -9.3048 3.9896 36 1 2.1586 -8.0454 3.7317 37 1 1.6144 -7.0327 5.9113 38 1 2.0163 -8.7546 6.1292 39 1 -0.0337 -8.0921 7.4058 40 1 -0.3782 -9.3326 6.1750 41 1 -0.8274 -6.3271 5.8780 42 1 -2.0924 -7.5607 6.0953 43 1 1.4269 -5.0798 2.1186 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:50 Heat of formation + Delta-G solvation = 25.149000 kcal Electronic energy + Delta-G solvation = -23793.524816 eV Core-core repulsion = 20418.263398 eV Total energy + Delta-G solvation = -3375.261418 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.14670 -39.43128 -37.38303 -33.99181 -33.81931 -33.21259 -31.68257 -30.73970 -28.72739 -28.52231 -25.17308 -24.99880 -23.93059 -22.51308 -21.78519 -21.09781 -20.17805 -19.91418 -17.36624 -16.77775 -16.36644 -16.07739 -15.85791 -15.20750 -14.87319 -14.66180 -14.55086 -14.39951 -13.95928 -13.68203 -13.14774 -13.08430 -13.01184 -12.55464 -12.44823 -11.85492 -11.78306 -11.60729 -11.49990 -11.33950 -11.00930 -10.93014 -10.83859 -10.64389 -10.55818 -10.50584 -10.12868 -9.86062 -9.63524 -9.58682 -9.11120 -8.37218 -8.03755 -7.68694 -6.01344 -4.04765 1.26531 1.80452 2.24928 2.72547 3.29780 3.37494 3.41208 3.56339 4.11500 4.41222 4.44593 4.46192 4.48407 4.58734 4.65392 4.79931 4.89164 5.05273 5.13387 5.26294 5.32178 5.34368 5.39970 5.45869 5.56291 5.57377 5.62513 5.68427 5.75602 5.88356 5.95095 6.13775 6.18000 6.37289 6.59647 6.62836 6.72906 6.78455 6.95048 7.09050 7.18868 7.33525 7.66307 7.78951 7.83146 7.98283 8.38070 9.02555 9.59534 11.09625 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.014437 B = 0.003585 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.051833 B = 7807.642944 C = 9074.249297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.030 3.970 10 C -0.082 4.082 11 C -0.005 4.005 12 C -0.149 4.149 13 C -0.045 4.045 14 C -0.192 4.192 15 C 0.069 3.931 16 N -0.246 5.246 17 N -0.404 5.404 18 C 0.351 3.649 19 H 0.090 0.910 20 C -0.158 4.158 21 C -0.121 4.121 22 C -0.159 4.159 23 C 0.067 3.933 24 O -0.380 6.380 25 C 0.137 3.863 26 C -0.150 4.150 27 H 0.260 0.740 28 H 0.019 0.981 29 H 0.017 0.983 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.192 0.808 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.101 0.899 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.088 -18.501 7.976 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.007 4.007 10 C -0.119 4.119 11 C -0.007 4.007 12 C -0.168 4.168 13 C -0.065 4.065 14 C -0.199 4.199 15 C -0.130 4.130 16 N -0.057 5.057 17 N -0.196 5.196 18 C 0.209 3.791 19 H 0.107 0.893 20 C -0.197 4.197 21 C -0.159 4.159 22 C -0.196 4.196 23 C -0.010 4.010 24 O -0.298 6.298 25 C 0.025 3.975 26 C -0.172 4.172 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.209 0.791 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.119 0.881 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.373 -19.121 9.069 21.166 hybrid contribution 0.735 1.550 -0.436 1.770 sum 1.108 -17.571 8.633 19.608 Atomic orbital electron populations 1.69981 1.06065 1.26533 1.50664 1.25024 0.94821 0.99248 0.95292 0.86549 0.80120 0.83818 0.77600 1.19694 1.20987 1.21043 1.21280 0.93090 0.90896 1.50794 0.92489 1.19080 0.93625 0.90344 0.97684 1.20915 0.98423 0.90960 1.01630 1.19943 0.93833 0.95273 0.91678 1.20685 1.01984 0.96038 0.98140 1.20268 0.96006 0.94601 0.95639 1.19824 1.08561 0.98075 0.93465 1.25045 0.98855 0.96520 0.92561 1.76567 1.13523 1.06374 1.09221 1.48064 1.50085 1.17598 1.03861 1.21562 0.84733 0.97809 0.74988 0.89302 1.22483 0.99238 1.01691 0.96252 1.21606 0.97452 1.02675 0.94136 1.22244 0.95556 1.01352 1.00496 1.22632 1.00538 0.98330 0.79486 1.87924 1.31784 1.89419 1.20683 1.18735 0.97591 0.93358 0.87814 1.19672 1.04625 0.93807 0.99114 0.93013 0.96215 0.96463 0.92087 0.91722 0.85515 0.85763 0.79094 0.89987 0.90247 0.91224 0.90707 0.90344 0.90738 0.92579 0.88135 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.76 4.95 -27.88 -0.14 0.62 16 10 C -0.08 -1.65 5.26 -27.88 -0.15 -1.79 16 11 C 0.00 -0.08 5.10 -104.95 -0.54 -0.62 16 12 C -0.15 -2.43 9.60 -39.95 -0.38 -2.81 16 13 C -0.04 -0.65 10.07 -39.58 -0.40 -1.05 16 14 C -0.19 -3.02 6.37 -105.20 -0.67 -3.69 16 15 C 0.07 0.95 12.28 -15.14 -0.19 0.77 16 16 N -0.25 -3.93 12.32 31.87 0.39 -3.54 16 17 N -0.40 -6.53 3.54 -56.75 -0.20 -6.73 16 18 C 0.35 4.78 3.54 -4.00 -0.01 4.77 16 19 H 0.09 1.16 7.60 -51.93 -0.39 0.77 16 20 C -0.16 -1.72 5.74 -26.60 -0.15 -1.87 16 21 C -0.12 -0.99 6.03 -26.55 -0.16 -1.15 16 22 C -0.16 -1.23 6.14 -26.59 -0.16 -1.40 16 23 C 0.07 0.64 6.84 37.20 0.25 0.90 16 24 O -0.38 -5.33 10.55 -35.23 -0.37 -5.70 16 25 C 0.14 2.33 6.87 -84.17 -0.58 1.76 16 26 C -0.15 -2.63 9.43 -39.79 -0.38 -3.00 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 32 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.19 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.12 1.98 7.74 -52.49 -0.41 1.57 16 LS Contribution 356.46 15.07 5.37 5.37 Total: -1.00 -33.10 356.46 -9.83 -42.93 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.68 Total: -0.75 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -4.06 Total: -21.88 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.93 Total: -36.33 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.37 Total: -5.70 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.10 -9.83 -42.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.076 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds