Wall clock time and date at job start Fri Apr 10 2020 20:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00054 * 2 1 4 4 H 1.48499 * 109.47464 * 270.00580 * 3 2 1 5 5 H 1.48509 * 109.46961 * 30.00519 * 3 2 1 6 6 H 1.48501 * 109.47470 * 150.00082 * 3 2 1 7 7 C 1.37878 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00059 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99729 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46955 * 180.02562 * 9 7 2 11 11 C 1.50691 * 109.47210 * 180.02562 * 10 9 7 12 12 C 1.38969 * 119.59812 * 89.99655 * 11 10 9 13 13 C 1.36459 * 120.63216 * 180.02562 * 12 11 10 14 14 C 1.39941 * 119.63936 * 359.97438 * 13 12 11 15 15 C 1.45935 * 134.03784 * 179.97438 * 14 13 12 16 16 N 1.30242 * 107.78509 * 180.02562 * 15 14 13 17 17 N 1.39873 * 110.08401 * 0.02562 * 16 15 14 18 18 C 1.46505 * 125.45765 * 180.02562 * 17 16 15 19 19 H 1.08997 * 109.48627 * 164.99435 * 18 17 16 20 20 C 1.53096 * 109.47837 * 285.02100 * 18 17 16 21 21 C 1.53181 * 109.16280 * 177.59093 * 20 18 17 22 22 C 1.53176 * 109.03564 * 303.02405 * 21 20 18 23 23 C 1.53090 * 109.16668 * 56.97896 * 22 21 20 24 24 O 1.42902 * 109.41282 * 302.38812 * 23 22 21 25 25 C 1.37034 * 109.08102 * 0.26271 * 17 16 15 26 26 C 1.36596 * 119.59480 * 270.01794 * 11 10 9 27 27 H 0.96997 * 119.99961 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47117 * 60.00141 * 9 7 2 29 29 H 1.08995 * 109.47479 * 299.99587 * 9 7 2 30 30 H 1.08997 * 109.47039 * 59.99524 * 10 9 7 31 31 H 1.09003 * 109.46720 * 300.00021 * 10 9 7 32 32 H 1.07999 * 119.68052 * 0.02562 * 12 11 10 33 33 H 1.08008 * 120.17762 * 179.97438 * 13 12 11 34 34 H 1.08000 * 126.10743 * 0.07152 * 15 14 13 35 35 H 1.08998 * 109.52300 * 297.50046 * 20 18 17 36 36 H 1.09004 * 109.51858 * 57.68772 * 20 18 17 37 37 H 1.09005 * 109.54183 * 62.88808 * 21 20 18 38 38 H 1.08991 * 109.54342 * 183.15360 * 21 20 18 39 39 H 1.09005 * 109.52173 * 297.06763 * 22 21 20 40 40 H 1.08998 * 109.57285 * 176.91739 * 22 21 20 41 41 H 1.09003 * 109.47962 * 182.41257 * 23 22 21 42 42 H 1.09000 * 109.48234 * 62.37294 * 23 22 21 43 43 H 1.08001 * 120.06635 * 0.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 6 1.1490 -5.5612 -1.2098 13 6 0.4664 -6.7425 -1.2350 14 6 0.1091 -7.3612 -0.0317 15 6 -0.6017 -8.5904 0.3050 16 7 -0.6523 -8.6778 1.6035 17 7 -0.0159 -7.5758 2.1842 18 6 0.1234 -7.3355 3.6227 19 1 0.8756 -6.5649 3.7914 20 6 -1.2190 -6.8728 4.1953 21 6 -1.0809 -6.6817 5.7088 22 6 -0.6025 -7.9944 6.3366 23 6 0.7160 -8.4138 5.6813 24 8 0.5252 -8.5439 4.2711 25 6 0.4518 -6.7545 1.1920 26 6 1.1539 -5.5515 1.1863 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5572 0.8897 30 1 2.8720 -3.6043 0.8894 31 1 2.8720 -3.6043 -0.8906 32 1 1.4255 -5.0833 -2.1380 33 1 0.2033 -7.1975 -2.1786 34 1 -1.0118 -9.3012 -0.3971 35 1 -1.5058 -5.9281 3.7334 36 1 -1.9808 -7.6253 3.9911 37 1 -0.3550 -5.8944 5.9122 38 1 -2.0472 -6.4064 6.1312 39 1 -1.3519 -8.7695 6.1758 40 1 -0.4488 -7.8529 7.4064 41 1 1.0392 -9.3694 6.0941 42 1 1.4759 -7.6573 5.8771 43 1 1.4257 -5.0790 2.1186 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:53 Heat of formation + Delta-G solvation = 24.985411 kcal Electronic energy + Delta-G solvation = -23814.563367 eV Core-core repulsion = 20439.294855 eV Total energy + Delta-G solvation = -3375.268512 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.14709 -39.43216 -37.38403 -33.97304 -33.82233 -33.21283 -31.68545 -30.73443 -28.72157 -28.52402 -25.16745 -24.99509 -23.92283 -22.51390 -21.78495 -21.08805 -20.16747 -19.91922 -17.36439 -16.78887 -16.34869 -16.08541 -15.85168 -15.19836 -14.86784 -14.67298 -14.47975 -14.47263 -13.94136 -13.65733 -13.16078 -13.06410 -12.99142 -12.56849 -12.44645 -11.86203 -11.75787 -11.57308 -11.51090 -11.31990 -11.00568 -10.92496 -10.76835 -10.68853 -10.55351 -10.53256 -10.13380 -9.86601 -9.63690 -9.58486 -9.13201 -8.37452 -8.03779 -7.68523 -6.02092 -4.05387 1.26607 1.80923 2.24141 2.72249 3.30332 3.36811 3.39767 3.55220 4.11687 4.43599 4.45286 4.47309 4.51155 4.59861 4.66253 4.80391 4.89143 5.04750 5.14104 5.26691 5.32323 5.33678 5.41702 5.48284 5.57679 5.59459 5.64030 5.72470 5.80799 5.88466 5.99160 6.14157 6.17955 6.37279 6.59745 6.62377 6.72297 6.78298 6.94663 7.08945 7.18304 7.33315 7.65235 7.78288 7.83111 7.97493 8.37495 9.01605 9.58836 11.08854 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.003640 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.424894 B = 7690.406252 C = 9055.017635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.031 3.969 10 C -0.082 4.082 11 C -0.004 4.004 12 C -0.149 4.149 13 C -0.045 4.045 14 C -0.192 4.192 15 C 0.069 3.931 16 N -0.246 5.246 17 N -0.405 5.405 18 C 0.352 3.648 19 H 0.089 0.911 20 C -0.160 4.160 21 C -0.121 4.121 22 C -0.159 4.159 23 C 0.068 3.932 24 O -0.382 6.382 25 C 0.137 3.863 26 C -0.151 4.151 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.017 0.983 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.192 0.808 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.055 0.945 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.962 -17.302 7.969 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.006 4.006 10 C -0.120 4.120 11 C -0.007 4.007 12 C -0.169 4.169 13 C -0.065 4.065 14 C -0.200 4.200 15 C -0.130 4.130 16 N -0.057 5.057 17 N -0.196 5.196 18 C 0.210 3.790 19 H 0.106 0.894 20 C -0.199 4.199 21 C -0.159 4.159 22 C -0.197 4.197 23 C -0.009 4.009 24 O -0.300 6.300 25 C 0.025 3.975 26 C -0.172 4.172 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.209 0.791 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.073 0.927 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.468 -18.042 9.068 20.246 hybrid contribution 0.538 1.672 -0.448 1.812 sum -0.930 -16.371 8.620 18.525 Atomic orbital electron populations 1.69972 1.06061 1.26634 1.50624 1.25017 0.94826 0.99231 0.95275 0.86602 0.79836 0.83463 0.78148 1.20619 1.21248 1.19854 1.21247 0.93068 0.90915 1.50883 0.92546 1.19072 0.93611 0.90312 0.97656 1.20918 0.98443 0.90953 1.01648 1.19941 0.93843 0.95249 0.91679 1.20682 1.01947 0.96089 0.98140 1.20265 0.96014 0.94580 0.95640 1.19823 1.08789 0.97877 0.93465 1.25043 0.98902 0.96472 0.92560 1.76567 1.13945 1.05944 1.09227 1.48055 1.49754 1.17945 1.03862 1.21556 0.95983 0.86466 0.74973 0.89353 1.22500 0.97824 1.03265 0.96270 1.21604 1.02607 0.97511 0.94152 1.22242 0.98586 0.98365 1.00465 1.22619 0.96236 1.02514 0.79516 1.87910 1.88494 1.32865 1.20689 1.18731 0.97322 0.93611 0.87799 1.19673 1.04302 0.94150 0.99117 0.92971 0.96226 0.96463 0.92085 0.91727 0.85519 0.85765 0.79093 0.89939 0.89980 0.91203 0.90602 0.90733 0.90370 0.88217 0.92710 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.78 4.96 -27.88 -0.14 0.64 16 10 C -0.08 -1.65 5.26 -27.88 -0.15 -1.80 16 11 C 0.00 -0.08 5.10 -104.95 -0.54 -0.62 16 12 C -0.15 -2.43 9.60 -39.95 -0.38 -2.82 16 13 C -0.04 -0.65 10.06 -39.59 -0.40 -1.05 16 14 C -0.19 -3.02 6.37 -105.20 -0.67 -3.69 16 15 C 0.07 0.95 12.28 -15.15 -0.19 0.77 16 16 N -0.25 -3.93 12.31 31.87 0.39 -3.54 16 17 N -0.40 -6.53 3.54 -56.75 -0.20 -6.73 16 18 C 0.35 4.80 3.54 -3.99 -0.01 4.78 16 19 H 0.09 1.13 7.60 -51.93 -0.39 0.74 16 20 C -0.16 -1.90 5.74 -26.59 -0.15 -2.05 16 21 C -0.12 -1.08 6.03 -26.55 -0.16 -1.24 16 22 C -0.16 -1.26 6.14 -26.59 -0.16 -1.42 16 23 C 0.07 0.62 6.84 37.20 0.25 0.87 16 24 O -0.38 -5.14 10.55 -35.23 -0.37 -5.51 16 25 C 0.14 2.34 6.87 -84.18 -0.58 1.76 16 26 C -0.15 -2.63 9.43 -39.79 -0.38 -3.00 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 1.18 8.07 -51.93 -0.42 0.77 16 31 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 32 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 33 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 34 H 0.19 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.12 1.98 7.74 -52.49 -0.41 1.57 16 LS Contribution 356.46 15.07 5.37 5.37 Total: -1.00 -32.75 356.46 -9.83 -42.58 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.68 Total: -0.45 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -4.06 Total: -22.13 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.93 Total: -36.16 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.37 Total: -5.51 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.75 -9.83 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.562 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds