Wall clock time and date at job start Fri Apr 10 2020 20:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00054 * 2 1 4 4 H 1.48499 * 109.47464 * 270.00580 * 3 2 1 5 5 H 1.48509 * 109.46961 * 30.00519 * 3 2 1 6 6 H 1.48501 * 109.47470 * 150.00082 * 3 2 1 7 7 C 1.37878 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00059 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99729 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46955 * 180.02562 * 9 7 2 11 11 C 1.50691 * 109.47210 * 180.02562 * 10 9 7 12 12 C 1.38969 * 119.59812 * 89.99655 * 11 10 9 13 13 C 1.36459 * 120.63216 * 180.02562 * 12 11 10 14 14 C 1.39941 * 119.63936 * 359.97438 * 13 12 11 15 15 C 1.45935 * 134.03784 * 179.97438 * 14 13 12 16 16 N 1.30242 * 107.78509 * 180.02562 * 15 14 13 17 17 N 1.39873 * 110.08401 * 0.02562 * 16 15 14 18 18 C 1.46505 * 125.45765 * 180.02562 * 17 16 15 19 19 H 1.08997 * 109.48627 * 164.99435 * 18 17 16 20 20 C 1.53096 * 109.47837 * 285.02100 * 18 17 16 21 21 C 1.53181 * 109.16280 * 177.59093 * 20 18 17 22 22 C 1.53176 * 109.03564 * 303.02405 * 21 20 18 23 23 C 1.53090 * 109.16668 * 56.97896 * 22 21 20 24 24 O 1.42902 * 109.41282 * 302.38812 * 23 22 21 25 25 C 1.37034 * 109.08102 * 0.26271 * 17 16 15 26 26 C 1.36596 * 119.59480 * 270.01794 * 11 10 9 27 27 H 0.96997 * 119.99961 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47117 * 60.00141 * 9 7 2 29 29 H 1.08995 * 109.47479 * 299.99587 * 9 7 2 30 30 H 1.08997 * 109.47039 * 59.99524 * 10 9 7 31 31 H 1.09003 * 109.46720 * 300.00021 * 10 9 7 32 32 H 1.07999 * 119.68052 * 0.02562 * 12 11 10 33 33 H 1.08008 * 120.17762 * 179.97438 * 13 12 11 34 34 H 1.08000 * 126.10743 * 0.07152 * 15 14 13 35 35 H 1.08998 * 109.52300 * 297.50046 * 20 18 17 36 36 H 1.09004 * 109.51858 * 57.68772 * 20 18 17 37 37 H 1.09005 * 109.54183 * 62.88808 * 21 20 18 38 38 H 1.08991 * 109.54342 * 183.15360 * 21 20 18 39 39 H 1.09005 * 109.52173 * 297.06763 * 22 21 20 40 40 H 1.08998 * 109.57285 * 176.91739 * 22 21 20 41 41 H 1.09003 * 109.47962 * 182.41257 * 23 22 21 42 42 H 1.09000 * 109.48234 * 62.37294 * 23 22 21 43 43 H 1.08001 * 120.06635 * 0.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 6 1.1490 -5.5612 -1.2098 13 6 0.4664 -6.7425 -1.2350 14 6 0.1091 -7.3612 -0.0317 15 6 -0.6017 -8.5904 0.3050 16 7 -0.6523 -8.6778 1.6035 17 7 -0.0159 -7.5758 2.1842 18 6 0.1234 -7.3355 3.6227 19 1 0.8756 -6.5649 3.7914 20 6 -1.2190 -6.8728 4.1953 21 6 -1.0809 -6.6817 5.7088 22 6 -0.6025 -7.9944 6.3366 23 6 0.7160 -8.4138 5.6813 24 8 0.5252 -8.5439 4.2711 25 6 0.4518 -6.7545 1.1920 26 6 1.1539 -5.5515 1.1863 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5572 0.8897 30 1 2.8720 -3.6043 0.8894 31 1 2.8720 -3.6043 -0.8906 32 1 1.4255 -5.0833 -2.1380 33 1 0.2033 -7.1975 -2.1786 34 1 -1.0118 -9.3012 -0.3971 35 1 -1.5058 -5.9281 3.7334 36 1 -1.9808 -7.6253 3.9911 37 1 -0.3550 -5.8944 5.9122 38 1 -2.0472 -6.4064 6.1312 39 1 -1.3519 -8.7695 6.1758 40 1 -0.4488 -7.8529 7.4064 41 1 1.0392 -9.3694 6.0941 42 1 1.4759 -7.6573 5.8771 43 1 1.4257 -5.0790 2.1186 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:52 Heat of formation + Delta-G solvation = 6.349960 kcal Electronic energy + Delta-G solvation = -23815.371460 eV Core-core repulsion = 20439.294855 eV Total energy + Delta-G solvation = -3376.076606 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.32156 -40.36418 -38.68865 -35.64891 -34.83145 -34.40338 -33.41090 -31.83006 -30.18089 -29.78007 -26.91068 -25.97863 -24.82585 -23.99163 -23.24987 -22.16222 -21.42409 -21.05407 -18.63945 -18.39606 -17.80543 -17.16824 -16.82193 -16.52182 -16.27435 -16.06150 -15.61819 -15.47804 -14.87853 -14.82256 -14.68685 -14.39553 -14.10690 -13.97928 -13.82669 -13.48677 -13.13534 -12.83060 -12.71567 -12.51302 -12.37589 -12.30399 -12.08406 -11.96718 -11.83890 -11.65835 -11.53296 -11.47542 -11.19882 -11.16560 -10.60570 -10.54118 -9.40511 -8.89428 -8.18355 -6.30213 0.02188 0.54645 1.16080 1.41965 1.43019 1.53851 1.56559 2.42213 2.60383 2.85634 3.14892 3.45987 3.49772 3.55642 3.77120 3.82612 3.87549 3.91343 4.02968 4.03880 4.31157 4.34483 4.40194 4.47622 4.60618 4.66084 4.74064 4.75932 4.85100 4.87415 4.89429 4.96486 5.02271 5.05191 5.20050 5.24238 5.41994 5.51716 5.53441 5.58496 5.73782 5.85212 5.88600 5.99789 6.18702 6.24006 6.67242 6.86755 7.39304 8.93152 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.003640 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.424894 B = 7690.406252 C = 9055.017635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.038 3.962 10 C -0.067 4.067 11 C -0.023 4.023 12 C -0.165 4.165 13 C -0.029 4.029 14 C -0.204 4.204 15 C 0.083 3.917 16 N -0.272 5.272 17 N -0.413 5.413 18 C 0.345 3.655 19 H 0.089 0.911 20 C -0.153 4.153 21 C -0.118 4.118 22 C -0.152 4.152 23 C 0.058 3.942 24 O -0.404 6.404 25 C 0.118 3.882 26 C -0.162 4.162 27 H 0.263 0.737 28 H -0.006 1.006 29 H -0.013 1.013 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.138 0.862 33 H 0.166 0.834 34 H 0.237 0.763 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.065 0.935 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.387 -18.147 7.991 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.580 4.580 8 H 0.082 0.918 9 C 0.001 3.999 10 C -0.105 4.105 11 C -0.025 4.025 12 C -0.184 4.184 13 C -0.048 4.048 14 C -0.211 4.211 15 C -0.114 4.114 16 N -0.082 5.082 17 N -0.205 5.205 18 C 0.204 3.796 19 H 0.106 0.894 20 C -0.192 4.192 21 C -0.156 4.156 22 C -0.189 4.189 23 C -0.018 4.018 24 O -0.323 6.323 25 C 0.006 3.994 26 C -0.184 4.184 27 H 0.072 0.928 28 H 0.012 0.988 29 H 0.005 0.995 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.156 0.844 33 H 0.183 0.817 34 H 0.253 0.747 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.135 0.865 42 H 0.083 0.917 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.879 -18.903 9.113 21.003 hybrid contribution 0.318 1.837 -0.437 1.914 sum -0.561 -17.066 8.676 19.153 Atomic orbital electron populations 1.70114 1.07880 1.27727 1.51669 1.25970 0.95693 1.03325 0.94704 0.85457 0.78687 0.78423 0.78543 1.19703 1.20964 1.18596 1.21706 0.93698 0.92085 1.50548 0.91754 1.18895 0.93935 0.92167 0.94889 1.20640 0.97370 0.90264 1.02196 1.19826 0.94960 0.94821 0.92918 1.20865 1.02765 0.97057 0.97743 1.20640 0.93874 0.93409 0.96926 1.20248 1.08838 0.98624 0.93407 1.25776 0.97197 0.96069 0.92407 1.76543 1.14908 1.06398 1.10387 1.48313 1.49720 1.17830 1.04616 1.21713 0.96753 0.86750 0.74369 0.89390 1.22421 0.96567 1.01800 0.98374 1.21639 1.03574 0.98529 0.91897 1.22207 0.97635 0.97298 1.01757 1.22947 0.97280 1.03986 0.77568 1.87874 1.88671 1.32776 1.22972 1.18915 0.97638 0.93759 0.89139 1.19677 1.04969 0.94796 0.98966 0.92833 0.98771 0.99466 0.91828 0.90780 0.84423 0.81684 0.74657 0.91513 0.91239 0.90586 0.89438 0.91260 0.87656 0.86461 0.91695 0.86415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.54 -30.53 9.11 25.60 0.23 -30.29 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.04 2.02 4.96 29.85 0.15 2.17 16 10 C -0.07 -2.77 5.26 29.85 0.16 -2.62 16 11 C -0.02 -0.84 5.10 -20.08 -0.10 -0.94 16 12 C -0.16 -5.27 9.60 22.03 0.21 -5.06 16 13 C -0.03 -0.77 10.06 22.27 0.22 -0.55 16 14 C -0.20 -6.14 6.37 -20.24 -0.13 -6.26 16 15 C 0.08 2.14 12.28 86.92 1.07 3.21 16 16 N -0.27 -8.50 12.31 -53.09 -0.65 -9.15 16 17 N -0.41 -13.50 3.54 -433.91 -1.54 -15.03 16 18 C 0.34 9.63 3.54 86.41 0.31 9.94 16 19 H 0.09 2.37 7.60 -2.39 -0.02 2.35 16 20 C -0.15 -3.73 5.74 30.69 0.18 -3.55 16 21 C -0.12 -2.03 6.03 30.71 0.19 -1.85 16 22 C -0.15 -2.16 6.14 30.68 0.19 -1.97 16 23 C 0.06 0.99 6.84 72.01 0.49 1.48 16 24 O -0.40 -10.85 10.55 -148.98 -1.57 -12.42 16 25 C 0.12 4.07 6.87 39.21 0.27 4.34 16 26 C -0.16 -5.87 9.43 22.14 0.21 -5.66 16 27 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 28 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 29 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 30 H 0.06 2.53 8.07 -2.39 -0.02 2.51 16 31 H 0.07 2.86 8.08 -2.39 -0.02 2.84 16 32 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 33 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.24 3.54 8.06 -2.91 -0.02 3.51 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.12 4.12 7.74 -2.91 -0.02 4.10 16 Total: -1.00 -72.46 356.46 3.63 -68.83 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.98 Total: 15.65 kcal Atomic # 6 Polarization: -41.20 SS G_CDS: 4.10 Total: -37.10 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -1.91 Total: -80.78 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -1.57 Total: -12.42 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -72.46 3.63 -68.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.179 kcal (2) G-P(sol) polarization free energy of solvation -72.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds