Wall clock time and date at job start Fri Apr 10 2020 20:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46820 * 2 1 4 4 C 1.50696 * 109.47268 * 120.00254 * 2 1 3 5 5 C 1.38238 * 119.99728 * 300.00098 * 4 2 1 6 6 C 1.38235 * 120.00108 * 180.02562 * 5 4 2 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47116 * 89.99867 * 8 7 6 10 10 C 1.52996 * 109.47210 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47094 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00222 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99602 * 180.02562 * 11 10 9 14 14 N 1.31506 * 120.00269 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99446 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47415 * 90.00153 * 15 13 11 17 17 H 1.48499 * 109.46831 * 209.99978 * 15 13 11 18 18 H 1.48497 * 109.47075 * 329.99663 * 15 13 11 19 19 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 20 20 C 1.38234 * 120.00209 * 120.02505 * 4 2 1 21 21 C 1.52998 * 109.47055 * 240.00073 * 2 1 3 22 22 F 1.39899 * 109.47495 * 299.99999 * 21 2 1 23 23 F 1.39905 * 109.47184 * 59.99881 * 21 2 1 24 24 F 1.39897 * 109.47189 * 179.97438 * 21 2 1 25 25 H 1.08995 * 109.47207 * 299.99751 * 1 2 3 26 26 H 1.08991 * 109.47238 * 60.00022 * 1 2 3 27 27 H 1.09008 * 109.46878 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46650 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47203 * 300.00008 * 3 2 1 30 30 H 1.08995 * 109.47028 * 60.00139 * 3 2 1 31 31 H 1.08000 * 120.00578 * 359.97438 * 5 4 2 32 32 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.46646 * 209.99280 * 8 7 6 34 34 H 1.09000 * 109.47248 * 329.99998 * 8 7 6 35 35 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 36 36 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 37 37 H 1.08997 * 109.47037 * 300.00424 * 10 9 8 38 38 H 1.09000 * 109.46839 * 60.00324 * 10 9 8 39 39 H 0.96998 * 119.99885 * 180.02562 * 14 13 11 40 40 H 1.08004 * 119.99934 * 179.72684 * 19 7 6 41 41 H 1.07999 * 120.00005 * 359.97438 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6984 -0.2382 2.4859 6 6 2.1596 -0.8895 3.6146 7 6 2.9553 -2.0128 3.4877 8 6 3.4586 -2.7226 4.7182 9 6 2.4518 -3.7965 5.1352 10 6 2.9630 -4.5175 6.3841 11 6 1.9710 -5.5749 6.7951 12 1 1.0666 -5.7187 6.2226 13 6 2.2181 -6.3588 7.9021 14 7 3.3196 -6.1842 8.5989 15 14 0.9888 -7.6700 8.4111 16 1 1.3236 -8.9505 7.7379 17 1 1.0443 -7.8556 9.8835 18 1 -0.3787 -7.2462 8.0169 19 6 3.2940 -2.4817 2.2322 20 6 2.8276 -1.8340 1.1035 21 6 2.0400 -0.7212 -1.2492 22 9 1.5737 -2.0402 -1.2493 23 9 1.5736 -0.0617 -2.3915 24 9 3.4390 -0.7207 -1.2496 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0278 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.0778 0.6401 2.5851 32 1 1.8990 -0.5203 4.5955 33 1 4.4190 -3.1898 4.5008 34 1 3.5793 -2.0036 5.5286 35 1 1.4913 -3.3294 5.3525 36 1 2.3309 -4.5155 4.3248 37 1 3.9234 -4.9847 6.1663 38 1 3.0840 -3.7987 7.1945 39 1 3.4936 -6.7359 9.3775 40 1 3.9193 -3.3567 2.1331 41 1 3.0885 -2.2030 0.1226 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066532.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:56 Heat of formation + Delta-G solvation = -158.703787 kcal Electronic energy + Delta-G solvation = -24310.030138 eV Core-core repulsion = 20352.646774 eV Total energy + Delta-G solvation = -3957.383365 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.140 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.46090 -47.89000 -47.79433 -39.80545 -36.71269 -34.31101 -32.38171 -30.95905 -29.90401 -27.78127 -26.83871 -26.36206 -23.78456 -22.63503 -21.72502 -20.34766 -19.94603 -18.84458 -18.57072 -17.60647 -16.37017 -15.77794 -15.43422 -15.12552 -14.87982 -14.56946 -14.47951 -14.24432 -14.04704 -13.98427 -13.78695 -13.73915 -13.68651 -13.51830 -12.94978 -12.89114 -12.61191 -12.48329 -11.97137 -11.84277 -11.66832 -11.54805 -11.28990 -10.99022 -10.89357 -10.66629 -10.64595 -10.44857 -9.67228 -9.35894 -9.10327 -8.85352 -8.36573 -8.33699 -5.98834 -4.01018 1.34011 1.46949 2.46875 3.32714 3.38809 3.42441 3.46463 3.67935 3.68684 3.89829 4.37133 4.47179 4.47999 4.66598 4.94391 4.99310 5.14115 5.15195 5.25225 5.30360 5.33350 5.36928 5.55644 5.57239 5.66602 5.75703 5.81243 5.94649 6.08259 6.12221 6.38285 6.45000 6.48237 6.58145 6.90322 6.93030 7.03685 7.15822 7.69233 7.83766 8.01637 8.44631 9.06273 9.63021 11.12499 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.028272 B = 0.002711 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.149282 B =10326.837640 C =10497.423705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.057 4.057 3 C -0.145 4.145 4 C -0.104 4.104 5 C -0.100 4.100 6 C -0.117 4.117 7 C -0.056 4.056 8 C -0.087 4.087 9 C -0.102 4.102 10 C 0.020 3.980 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.112 4.112 20 C -0.119 4.119 21 C 0.457 3.543 22 F -0.177 7.177 23 F -0.183 7.183 24 F -0.178 7.178 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.125 0.875 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.910 16.802 -19.864 26.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.058 4.058 3 C -0.203 4.203 4 C -0.104 4.104 5 C -0.118 4.118 6 C -0.135 4.135 7 C -0.056 4.056 8 C -0.125 4.125 9 C -0.140 4.140 10 C -0.017 4.017 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.130 4.130 20 C -0.137 4.137 21 C 0.403 3.597 22 F -0.158 7.158 23 F -0.164 7.164 24 F -0.159 7.159 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.143 0.857 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.806 16.721 -19.743 26.024 hybrid contribution -0.501 -1.003 0.109 1.127 sum -3.307 15.717 -19.634 25.367 Atomic orbital electron populations 1.21975 0.90411 1.04108 1.03860 1.20669 0.98909 0.96976 0.89243 1.21966 1.02541 0.91881 1.03867 1.19119 1.01235 0.97214 0.92877 1.20723 0.99993 0.99825 0.91224 1.21066 0.98153 0.95798 0.98463 1.20295 0.95414 0.94343 0.95566 1.20840 0.99888 0.98304 0.93436 1.21622 0.96872 0.95559 0.99941 1.19120 0.96427 0.94799 0.91308 1.21273 1.05836 1.17579 1.11142 0.92735 1.25025 0.95452 0.97497 0.96515 1.69961 1.25087 1.40134 1.18402 0.86608 0.81730 0.82132 0.77634 1.20666 1.21231 1.19877 1.21061 1.00402 0.99907 0.91652 1.21327 0.97625 0.95233 0.99490 1.20492 0.75643 0.77811 0.85782 1.93180 1.88388 1.37533 1.96703 1.93155 1.88502 1.80776 1.53997 1.93167 1.29813 1.96247 1.96717 0.89991 0.91121 0.90921 0.91040 0.91121 0.90020 0.86133 0.85658 0.91286 0.91275 0.93307 0.93308 0.96601 0.96596 0.93028 0.85725 0.85919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.04 37.16 0.30 -0.83 16 2 C -0.06 -0.52 0.42 -155.66 -0.07 -0.58 16 3 C -0.15 -1.05 8.04 37.16 0.30 -0.75 16 4 C -0.10 -1.19 4.64 -104.63 -0.48 -1.67 16 5 C -0.10 -1.11 8.71 -39.58 -0.34 -1.46 16 6 C -0.12 -1.53 9.70 -39.58 -0.38 -1.92 16 7 C -0.06 -0.83 5.13 -104.62 -0.54 -1.37 16 8 C -0.09 -1.47 5.35 -27.88 -0.15 -1.62 16 9 C -0.10 -2.11 5.13 -26.73 -0.14 -2.25 16 10 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 11 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 15 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 C -0.11 -1.59 9.70 -39.58 -0.38 -1.97 16 20 C -0.12 -1.54 8.14 -39.58 -0.32 -1.86 16 21 C 0.46 4.73 1.88 37.16 0.07 4.80 16 22 F -0.18 -2.05 14.69 2.25 0.03 -2.02 16 23 F -0.18 -1.81 16.28 2.25 0.04 -1.78 16 24 F -0.18 -1.99 14.69 2.25 0.03 -1.96 16 25 H 0.08 0.53 7.39 -51.93 -0.38 0.15 16 26 H 0.07 0.45 7.80 -51.93 -0.41 0.05 16 27 H 0.07 0.63 7.80 -51.92 -0.41 0.22 16 28 H 0.07 0.56 7.80 -51.93 -0.41 0.15 16 29 H 0.07 0.43 7.80 -51.93 -0.41 0.03 16 30 H 0.08 0.49 7.39 -51.93 -0.38 0.11 16 31 H 0.12 1.02 7.10 -52.49 -0.37 0.65 16 32 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 34 H 0.07 1.12 8.09 -51.93 -0.42 0.71 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 41 H 0.12 1.53 4.63 -52.49 -0.24 1.28 16 LS Contribution 342.85 15.07 5.17 5.17 Total: -1.00 -30.59 342.85 -7.63 -38.22 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -5.92 Total: -3.30 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: -2.69 Total: -24.76 kcal Atomic # 7 Polarization: -27.11 SS G_CDS: 0.74 Total: -26.38 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 0.10 Total: -5.75 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.59 -7.63 -38.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066532.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.484 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds