Wall clock time and date at job start Fri Apr 10 2020 20:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46820 * 2 1 4 4 C 1.50696 * 109.47268 * 120.00254 * 2 1 3 5 5 C 1.38238 * 119.99728 * 300.00098 * 4 2 1 6 6 C 1.38235 * 120.00108 * 180.02562 * 5 4 2 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47116 * 89.99867 * 8 7 6 10 10 C 1.52996 * 109.47210 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47094 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00222 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99602 * 180.02562 * 11 10 9 14 14 N 1.31506 * 120.00269 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99446 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47415 * 90.00153 * 15 13 11 17 17 H 1.48499 * 109.46831 * 209.99978 * 15 13 11 18 18 H 1.48497 * 109.47075 * 329.99663 * 15 13 11 19 19 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 20 20 C 1.38234 * 120.00209 * 120.02505 * 4 2 1 21 21 C 1.52998 * 109.47055 * 240.00073 * 2 1 3 22 22 F 1.39899 * 109.47495 * 299.99999 * 21 2 1 23 23 F 1.39905 * 109.47184 * 59.99881 * 21 2 1 24 24 F 1.39897 * 109.47189 * 179.97438 * 21 2 1 25 25 H 1.08995 * 109.47207 * 299.99751 * 1 2 3 26 26 H 1.08991 * 109.47238 * 60.00022 * 1 2 3 27 27 H 1.09008 * 109.46878 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46650 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47203 * 300.00008 * 3 2 1 30 30 H 1.08995 * 109.47028 * 60.00139 * 3 2 1 31 31 H 1.08000 * 120.00578 * 359.97438 * 5 4 2 32 32 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.46646 * 209.99280 * 8 7 6 34 34 H 1.09000 * 109.47248 * 329.99998 * 8 7 6 35 35 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 36 36 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 37 37 H 1.08997 * 109.47037 * 300.00424 * 10 9 8 38 38 H 1.09000 * 109.46839 * 60.00324 * 10 9 8 39 39 H 0.96998 * 119.99885 * 180.02562 * 14 13 11 40 40 H 1.08004 * 119.99934 * 179.72684 * 19 7 6 41 41 H 1.07999 * 120.00005 * 359.97438 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6984 -0.2382 2.4859 6 6 2.1596 -0.8895 3.6146 7 6 2.9553 -2.0128 3.4877 8 6 3.4586 -2.7226 4.7182 9 6 2.4518 -3.7965 5.1352 10 6 2.9630 -4.5175 6.3841 11 6 1.9710 -5.5749 6.7951 12 1 1.0666 -5.7187 6.2226 13 6 2.2181 -6.3588 7.9021 14 7 3.3196 -6.1842 8.5989 15 14 0.9888 -7.6700 8.4111 16 1 1.3236 -8.9505 7.7379 17 1 1.0443 -7.8556 9.8835 18 1 -0.3787 -7.2462 8.0169 19 6 3.2940 -2.4817 2.2322 20 6 2.8276 -1.8340 1.1035 21 6 2.0400 -0.7212 -1.2492 22 9 1.5737 -2.0402 -1.2493 23 9 1.5736 -0.0617 -2.3915 24 9 3.4390 -0.7207 -1.2496 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0278 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.0778 0.6401 2.5851 32 1 1.8990 -0.5203 4.5955 33 1 4.4190 -3.1898 4.5008 34 1 3.5793 -2.0036 5.5286 35 1 1.4913 -3.3294 5.3525 36 1 2.3309 -4.5155 4.3248 37 1 3.9234 -4.9847 6.1663 38 1 3.0840 -3.7987 7.1945 39 1 3.4936 -6.7359 9.3775 40 1 3.9193 -3.3567 2.1331 41 1 3.0885 -2.2030 0.1226 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066532.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:55 Heat of formation + Delta-G solvation = -172.395454 kcal Electronic energy + Delta-G solvation = -24310.623854 eV Core-core repulsion = 20352.646774 eV Total energy + Delta-G solvation = -3957.977080 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.140 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -51.28414 -48.69592 -48.64903 -40.76047 -37.68965 -35.98896 -34.20314 -31.94561 -31.37944 -28.33325 -28.32916 -27.26342 -25.45757 -23.60765 -22.98943 -21.83309 -21.03966 -19.68201 -19.39408 -18.49598 -18.41875 -16.80526 -16.52500 -16.37754 -16.23839 -15.69158 -15.42665 -15.18266 -15.07973 -14.96732 -14.81324 -14.67832 -14.60556 -14.33699 -14.25595 -14.07197 -13.89237 -13.34170 -13.15241 -13.03858 -13.02945 -12.66599 -12.47240 -12.40456 -12.33185 -12.21307 -11.89143 -11.75062 -11.42521 -11.31438 -11.09933 -10.55781 -9.84363 -9.46313 -8.20380 -6.31615 0.33264 0.47586 1.39345 1.40692 1.51944 1.69463 2.40574 2.69841 2.74627 2.89235 3.05672 3.12419 3.57590 3.80041 3.93723 3.97865 3.98601 4.09871 4.31385 4.51456 4.55849 4.58719 4.66744 4.71145 4.75477 4.77481 4.80987 4.94837 5.08093 5.15700 5.16738 5.20648 5.21809 5.25691 5.48306 5.49074 5.53260 5.69399 5.83355 5.85745 6.04967 6.25847 6.85366 7.37594 8.91293 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.028272 B = 0.002711 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.149282 B =10326.837640 C =10497.423705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.053 4.053 3 C -0.145 4.145 4 C -0.097 4.097 5 C -0.092 4.092 6 C -0.122 4.122 7 C -0.077 4.077 8 C -0.076 4.076 9 C -0.088 4.088 10 C 0.023 3.977 11 C -0.545 4.545 12 H 0.057 0.943 13 C -0.001 4.001 14 N -0.933 5.933 15 Si 0.964 3.036 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.263 1.263 19 C -0.125 4.125 20 C -0.131 4.131 21 C 0.451 3.549 22 F -0.187 7.187 23 F -0.180 7.180 24 F -0.186 7.186 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.156 0.844 32 H 0.136 0.864 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.043 0.957 37 H -0.009 1.009 38 H -0.005 1.005 39 H 0.264 0.736 40 H 0.121 0.879 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.782 18.217 -20.698 27.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.055 4.055 3 C -0.202 4.202 4 C -0.097 4.097 5 C -0.110 4.110 6 C -0.140 4.140 7 C -0.077 4.077 8 C -0.114 4.114 9 C -0.125 4.125 10 C -0.014 4.014 11 C -0.583 4.583 12 H 0.075 0.925 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.788 3.212 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.187 1.187 19 C -0.143 4.143 20 C -0.149 4.149 21 C 0.398 3.602 22 F -0.169 7.169 23 F -0.161 7.161 24 F -0.167 7.167 25 H 0.118 0.882 26 H 0.104 0.896 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.174 0.826 32 H 0.154 0.846 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.009 0.991 38 H 0.013 0.987 39 H 0.073 0.927 40 H 0.139 0.861 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.678 18.143 -20.593 27.841 hybrid contribution 0.107 -1.405 0.297 1.440 sum -4.571 16.738 -20.296 26.702 Atomic orbital electron populations 1.22030 0.88951 1.03833 1.05548 1.20767 0.99934 0.97564 0.87187 1.22021 1.02097 0.90511 1.05552 1.19419 0.99770 0.96314 0.94231 1.21040 0.99422 1.00345 0.90145 1.21273 0.97606 0.95244 0.99839 1.20100 0.97385 0.95724 0.94538 1.20618 0.98586 0.97359 0.94820 1.21383 0.97780 0.96164 0.97202 1.19034 0.95083 0.94231 0.93011 1.21718 1.06450 1.18517 1.11604 0.92458 1.25980 0.97468 0.99921 0.96465 1.70089 1.26997 1.41336 1.18928 0.85463 0.79343 0.78971 0.77391 1.19833 1.20546 1.18740 1.21117 1.00933 1.00249 0.92049 1.21431 0.98327 0.96065 0.99041 1.20797 0.75333 0.77554 0.86564 1.93160 1.88461 1.38475 1.96783 1.93158 1.88401 1.80588 1.53946 1.93153 1.30521 1.96252 1.96784 0.88201 0.89617 0.92192 0.91857 0.89687 0.88157 0.82596 0.84634 0.91750 0.90945 0.93092 0.93770 0.99072 0.98679 0.92731 0.86114 0.85880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.04 71.98 0.58 -1.21 16 2 C -0.05 -0.83 0.42 -52.93 -0.02 -0.85 16 3 C -0.14 -1.61 8.04 71.98 0.58 -1.03 16 4 C -0.10 -2.01 4.64 -19.87 -0.09 -2.10 16 5 C -0.09 -1.78 8.71 22.27 0.19 -1.58 16 6 C -0.12 -2.98 9.70 22.27 0.22 -2.76 16 7 C -0.08 -2.28 5.13 -19.86 -0.10 -2.38 16 8 C -0.08 -2.62 5.35 29.85 0.16 -2.46 16 9 C -0.09 -3.69 5.13 30.59 0.16 -3.53 16 10 C 0.02 1.26 4.97 29.85 0.15 1.41 16 11 C -0.54 -31.71 9.11 25.60 0.23 -31.48 16 12 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 13 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 14 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 15 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 18 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 19 C -0.13 -3.58 9.70 22.27 0.22 -3.36 16 20 C -0.13 -3.31 8.14 22.27 0.18 -3.13 16 21 C 0.45 8.69 1.88 71.98 0.14 8.83 16 22 F -0.19 -4.21 14.69 44.97 0.66 -3.55 16 23 F -0.18 -3.23 16.28 44.97 0.73 -2.50 16 24 F -0.19 -3.99 14.69 44.97 0.66 -3.33 16 25 H 0.10 0.87 7.39 -2.39 -0.02 0.85 16 26 H 0.08 0.81 7.80 -2.39 -0.02 0.79 16 27 H 0.06 0.90 7.80 -2.38 -0.02 0.88 16 28 H 0.06 0.83 7.80 -2.39 -0.02 0.81 16 29 H 0.08 0.73 7.80 -2.39 -0.02 0.71 16 30 H 0.10 0.76 7.39 -2.39 -0.02 0.74 16 31 H 0.16 1.89 7.10 -2.91 -0.02 1.87 16 32 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 33 H 0.06 2.22 8.08 -2.39 -0.02 2.20 16 34 H 0.07 2.39 8.09 -2.39 -0.02 2.37 16 35 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.12 3.38 8.06 -2.91 -0.02 3.36 16 41 H 0.12 3.05 4.63 -2.91 -0.01 3.04 16 Total: -1.00 -66.59 342.85 8.43 -58.17 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 1.02 Total: 6.80 kcal Atomic # 6 Polarization: -48.27 SS G_CDS: 3.04 Total: -45.23 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.28 Total: -57.18 kcal Atomic # 9 Polarization: -11.43 SS G_CDS: 2.05 Total: -9.38 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -66.59 8.43 -58.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066532.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.230 kcal (2) G-P(sol) polarization free energy of solvation -66.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds