Wall clock time and date at job start Fri Apr 10 2020 20:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47142 * 239.99837 * 3 2 1 5 5 H 1.48498 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47267 * 119.99771 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00123 * 163.08901 * 7 2 1 9 9 N 1.36934 * 120.00015 * 343.08772 * 7 2 1 10 10 C 1.46928 * 120.63265 * 331.83027 * 9 7 2 11 11 C 1.53201 * 108.89275 * 233.51651 * 10 9 7 12 12 C 1.53071 * 109.29371 * 305.57634 * 11 10 9 13 13 N 1.46903 * 109.45056 * 181.24459 * 12 11 10 14 14 C 1.46905 * 110.99864 * 84.78784 * 13 12 11 15 15 C 1.50696 * 109.46874 * 179.97438 * 14 13 12 16 16 C 1.37861 * 120.01991 * 260.00090 * 15 14 13 17 17 C 1.38723 * 120.69232 * 179.97438 * 16 15 14 18 18 C 1.37758 * 120.27399 * 0.02562 * 17 16 15 19 19 C 1.39383 * 119.60223 * 0.02562 * 18 17 16 20 20 C 1.46784 * 134.34847 * 179.97438 * 19 18 17 21 21 C 1.33998 * 106.18587 * 180.02562 * 20 19 18 22 22 O 1.34441 * 110.15749 * 359.97438 * 21 20 19 23 23 C 1.34838 * 110.89988 * 359.73565 * 22 21 20 24 24 C 1.53045 * 109.66047 * 61.15498 * 12 11 10 25 25 C 1.46932 * 120.63392 * 151.80754 * 9 7 2 26 26 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.58613 * 353.36947 * 10 9 7 28 28 H 1.08995 * 109.59058 * 113.65812 * 10 9 7 29 29 H 1.09002 * 109.49837 * 65.38934 * 11 10 9 30 30 H 1.09003 * 109.49550 * 185.48233 * 11 10 9 31 31 H 1.09001 * 109.33784 * 301.13345 * 12 11 10 32 32 H 1.00901 * 110.99759 * 208.74148 * 13 12 11 33 33 H 1.08993 * 109.46934 * 300.00085 * 14 13 12 34 34 H 1.08999 * 109.46588 * 60.00259 * 14 13 12 35 35 H 1.08002 * 119.65563 * 359.97438 * 16 15 14 36 36 H 1.07997 * 119.86684 * 180.02562 * 17 16 15 37 37 H 1.08004 * 120.20161 * 179.97438 * 18 17 16 38 38 H 1.08006 * 126.90577 * 0.02562 * 20 19 18 39 39 H 1.07995 * 124.91675 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.49555 * 178.74703 * 24 12 11 41 41 H 1.08999 * 109.49562 * 58.65207 * 24 12 11 42 42 H 1.08996 * 109.59017 * 246.20330 * 25 9 7 43 43 H 1.09009 * 109.58200 * 6.48305 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3701 -2.3622 0.3460 10 6 0.2261 -2.3400 1.2678 11 6 0.4939 -3.3200 2.4145 12 6 0.8120 -4.7009 1.8358 13 7 1.0402 -5.6505 2.9332 14 6 -0.2288 -6.2099 3.4177 15 6 0.0448 -7.1777 4.5400 16 6 0.0563 -8.5340 4.2937 17 6 0.3072 -9.4373 5.3162 18 6 0.5485 -8.9881 6.5960 19 6 0.5386 -7.6193 6.8585 20 6 0.7465 -6.8037 8.0611 21 6 0.6080 -5.5279 7.6756 22 8 0.3366 -5.4681 6.3603 23 6 0.2906 -6.7036 5.8220 24 6 2.0674 -4.6174 0.9645 25 6 1.8137 -3.6528 -0.1983 26 1 -0.4850 0.8400 -0.0004 27 1 0.0993 -1.3344 1.6687 28 1 -0.6775 -2.6380 0.7360 29 1 1.3427 -2.9695 3.0019 30 1 -0.3882 -3.3843 3.0516 31 1 -0.0283 -5.0408 1.2304 32 1 1.6742 -6.3831 2.6514 33 1 -0.8664 -5.4036 3.7801 34 1 -0.7305 -6.7316 2.6028 35 1 -0.1319 -8.8973 3.2941 36 1 0.3135 -10.4970 5.1082 37 1 0.7433 -9.6924 7.3913 38 1 0.9669 -7.1603 9.0565 39 1 0.7016 -4.6716 8.3271 40 1 2.3041 -5.6063 0.5718 41 1 2.9024 -4.2538 1.5634 42 1 1.0401 -4.0603 -0.8491 43 1 2.7332 -3.5129 -0.7669 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261259148.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:58 Heat of formation + Delta-G solvation = 31.328856 kcal Electronic energy + Delta-G solvation = -23933.247270 eV Core-core repulsion = 20558.253830 eV Total energy + Delta-G solvation = -3374.993439 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.30263 -39.78452 -38.87571 -36.73532 -34.57297 -33.39304 -32.06090 -31.61533 -30.51941 -30.09149 -27.12592 -25.70033 -23.97377 -23.58036 -23.17088 -22.83968 -21.46230 -20.71719 -18.72223 -18.36157 -17.94156 -17.06642 -16.94849 -16.49914 -16.32896 -15.91586 -15.64687 -15.33160 -15.08734 -14.85519 -14.70536 -14.16743 -13.80837 -13.70677 -13.58621 -13.51610 -13.14020 -13.04614 -12.88656 -12.71469 -12.56740 -12.42159 -12.07410 -11.99658 -11.79469 -11.76412 -11.27972 -11.22675 -10.96496 -10.54942 -9.50342 -9.37900 -9.05774 -8.69769 -7.88185 -5.33858 -0.02740 0.45141 1.45616 1.48140 1.49031 1.55614 2.02482 2.50960 2.71271 3.22505 3.32883 3.58769 3.68523 3.68718 3.95574 3.96375 4.08989 4.17707 4.30707 4.41533 4.44110 4.49935 4.53968 4.58461 4.66049 4.70842 4.78895 4.85112 4.96098 4.97211 5.03265 5.09790 5.19913 5.33399 5.38199 5.44282 5.50348 5.51331 5.55272 5.63425 5.72953 5.80485 6.08046 6.30099 6.38294 6.52560 7.13803 7.85209 8.37422 9.18493 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.023722 B = 0.003185 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.043811 B = 8789.712078 C = 9527.418285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.266 4.266 8 H 0.067 0.933 9 N -0.611 5.611 10 C 0.181 3.819 11 C -0.109 4.109 12 C 0.109 3.891 13 N -0.683 5.683 14 C 0.105 3.895 15 C -0.086 4.086 16 C -0.090 4.090 17 C -0.134 4.134 18 C -0.079 4.079 19 C -0.157 4.157 20 C -0.221 4.221 21 C -0.002 4.002 22 O -0.214 6.214 23 C 0.043 3.957 24 C -0.118 4.118 25 C 0.143 3.857 26 H 0.250 0.750 27 H 0.051 0.949 28 H -0.005 1.005 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.347 0.653 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.154 0.846 36 H 0.161 0.839 37 H 0.151 0.849 38 H 0.184 0.816 39 H 0.237 0.763 40 H 0.086 0.914 41 H 0.055 0.945 42 H 0.016 0.984 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.556 -20.711 14.472 25.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.396 4.396 8 H 0.084 0.916 9 N -0.335 5.335 10 C 0.054 3.946 11 C -0.148 4.148 12 C -0.001 4.001 13 N -0.315 5.315 14 C -0.023 4.023 15 C -0.087 4.087 16 C -0.109 4.109 17 C -0.151 4.151 18 C -0.097 4.097 19 C -0.158 4.158 20 C -0.240 4.240 21 C -0.066 4.066 22 O -0.116 6.116 23 C -0.004 4.004 24 C -0.158 4.158 25 C 0.017 3.983 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.013 0.987 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.166 0.834 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.172 0.828 36 H 0.178 0.822 37 H 0.168 0.832 38 H 0.201 0.799 39 H 0.253 0.747 40 H 0.104 0.896 41 H 0.074 0.926 42 H 0.034 0.966 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.437 -19.848 14.764 24.741 hybrid contribution -0.118 0.807 -0.634 1.033 sum 0.319 -19.041 14.130 23.713 Atomic orbital electron populations 1.70183 1.06729 1.25941 1.55329 1.25832 0.96077 1.01617 1.01167 0.85327 0.77588 0.79093 0.78373 1.19843 1.21896 1.20562 1.19502 0.92879 0.86158 1.41079 0.91551 1.44317 1.35921 1.02542 1.50701 1.20538 0.87786 0.97373 0.88856 1.21936 0.99765 0.95456 0.97676 1.21230 0.96901 0.91921 0.90017 1.60459 1.13043 1.20180 1.37805 1.20762 0.91708 0.95347 0.94490 1.18869 1.05002 0.94728 0.90126 1.21185 0.98490 0.90089 1.01110 1.21365 1.00746 1.01176 0.91862 1.20893 0.98122 0.92475 0.98225 1.20412 1.06324 0.95418 0.93636 1.22855 1.09700 0.91977 0.99475 1.24761 0.99830 1.00765 0.81267 1.84086 1.73918 1.29757 1.23808 1.19766 1.03001 0.82437 0.95231 1.22027 0.96974 0.99756 0.97012 1.21032 0.97480 0.85804 0.93945 0.94096 0.93072 0.98686 0.93848 0.93140 0.94564 0.83400 0.92267 0.92630 0.82817 0.82163 0.83161 0.79906 0.74711 0.89600 0.92573 0.96618 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.14 11.20 21.65 0.24 -56.90 16 2 C -0.05 -2.98 4.92 84.86 0.42 -2.57 16 3 Si 0.97 46.14 29.59 68.60 2.03 48.17 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 7 C -0.27 -15.20 9.58 84.03 0.81 -14.40 16 8 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 9 N -0.61 -32.14 3.00 -699.07 -2.09 -34.24 16 10 C 0.18 9.30 5.30 86.37 0.46 9.76 16 11 C -0.11 -4.58 5.60 30.69 0.17 -4.41 16 12 C 0.11 3.76 2.45 44.95 0.11 3.87 16 13 N -0.68 -20.23 6.30 -495.37 -3.12 -23.35 16 14 C 0.11 2.84 5.62 85.55 0.48 3.32 16 15 C -0.09 -2.15 5.40 -19.80 -0.11 -2.26 16 16 C -0.09 -1.66 9.64 22.30 0.21 -1.45 16 17 C -0.13 -2.08 10.03 22.27 0.22 -1.85 16 18 C -0.08 -1.40 10.10 22.43 0.23 -1.17 16 19 C -0.16 -3.63 6.40 -20.21 -0.13 -3.76 16 20 C -0.22 -4.24 11.14 23.54 0.26 -3.98 16 21 C 0.00 -0.04 11.96 66.85 0.80 0.76 16 22 O -0.21 -6.31 10.58 -9.15 -0.10 -6.40 16 23 C 0.04 1.20 7.11 22.98 0.16 1.37 16 24 C -0.12 -4.05 5.37 30.67 0.16 -3.89 16 25 C 0.14 6.08 6.52 86.36 0.56 6.64 16 26 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 27 H 0.05 2.98 6.06 -2.39 -0.01 2.96 16 28 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 2.04 7.42 -2.39 -0.02 2.02 16 31 H 0.04 1.27 7.80 -2.39 -0.02 1.25 16 32 H 0.35 8.90 8.32 -89.69 -0.75 8.15 16 33 H 0.06 1.85 7.41 -2.39 -0.02 1.83 16 34 H 0.06 1.30 7.90 -2.39 -0.02 1.28 16 35 H 0.15 2.04 8.02 -2.91 -0.02 2.02 16 36 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 37 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 38 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.24 2.80 8.06 -2.91 -0.02 2.78 16 40 H 0.09 2.31 8.10 -2.39 -0.02 2.29 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.06 2.39 7.93 -2.38 -0.02 2.37 16 Total: -1.00 -71.81 349.06 2.05 -69.76 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.26 Total: 16.98 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 4.82 Total: -14.02 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -4.97 Total: -114.49 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.10 Total: -6.40 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -71.81 2.05 -69.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261259148.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.090 kcal (2) G-P(sol) polarization free energy of solvation -71.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds