Wall clock time and date at job start Fri Apr 10 2020 20:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86802 * 119.99635 * 2 1 4 4 H 1.48501 * 109.47190 * 269.99805 * 3 2 1 5 5 H 1.48504 * 109.47261 * 30.00242 * 3 2 1 6 6 H 1.48505 * 109.46744 * 150.00133 * 3 2 1 7 7 C 1.39945 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99515 * 163.71055 * 7 2 1 9 9 C 1.41394 * 120.00412 * 343.71210 * 7 2 1 10 10 C 1.40729 * 120.24253 * 334.19229 * 9 7 2 11 11 C 1.37604 * 119.74523 * 180.31894 * 10 9 7 12 12 C 1.38658 * 120.24286 * 359.65658 * 11 10 9 13 13 C 1.38611 * 120.50170 * 0.02562 * 12 11 10 14 14 C 1.37638 * 120.25122 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.12542 * 179.97438 * 14 13 12 16 16 C 1.50708 * 109.46804 * 264.99682 * 15 14 13 17 17 O 1.21285 * 119.99764 * 359.97438 * 16 15 14 18 18 N 1.34769 * 119.99802 * 180.02562 * 16 15 14 19 19 C 1.46505 * 119.99982 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47218 * 179.97438 * 19 18 16 21 21 N 1.46901 * 109.47200 * 179.97438 * 20 19 18 22 22 C 1.48222 * 111.00399 * 170.00028 * 21 20 19 23 23 C 1.51115 * 105.44416 * 144.85558 * 22 21 20 24 24 C 1.31116 * 109.36703 * 343.13975 * 23 22 21 25 25 C 1.48229 * 111.00261 * 283.64184 * 21 20 19 26 26 H 0.97002 * 120.00056 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.13045 * 359.97438 * 10 9 7 28 28 H 1.07996 * 119.87660 * 179.67990 * 11 10 9 29 29 H 1.07999 * 119.74238 * 180.02562 * 12 11 10 30 30 H 1.08004 * 119.86993 * 179.97438 * 13 12 11 31 31 H 1.08999 * 109.46851 * 145.00218 * 15 14 13 32 32 H 1.08992 * 109.47579 * 24.99560 * 15 14 13 33 33 H 0.96997 * 120.00512 * 359.97438 * 18 16 15 34 34 H 1.09007 * 109.46923 * 59.99784 * 19 18 16 35 35 H 1.08996 * 109.47128 * 300.00376 * 19 18 16 36 36 H 1.08992 * 109.47119 * 60.00252 * 20 19 18 37 37 H 1.09001 * 109.47387 * 299.99731 * 20 19 18 38 38 H 1.09006 * 110.26852 * 263.87584 * 22 21 20 39 39 H 1.09005 * 110.26372 * 25.83503 * 22 21 20 40 40 H 1.07997 * 125.27279 * 163.08255 * 23 22 21 41 41 H 1.08000 * 125.24830 * 179.97438 * 24 23 22 42 42 H 1.09003 * 110.26249 * 334.07120 * 25 21 20 43 43 H 1.09002 * 110.26412 * 96.03637 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4396 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2120 0.0005 8 1 3.0555 -1.2308 -0.2618 9 6 1.3436 -2.4118 0.3445 10 6 0.2103 -2.3806 1.1782 11 6 -0.4245 -3.5550 1.5117 12 6 0.0445 -4.7653 1.0239 13 6 1.1559 -4.8072 0.1967 14 6 1.8072 -3.6450 -0.1492 15 6 3.0156 -3.6940 -1.0482 16 6 4.2663 -3.7191 -0.2077 17 8 4.1843 -3.6988 1.0022 18 7 5.4758 -3.7632 -0.8005 19 6 6.6916 -3.7871 0.0165 20 6 7.9185 -3.8369 -0.8962 21 7 9.1377 -3.8603 -0.0770 22 6 10.3307 -4.1483 -0.9080 23 6 11.4507 -3.3368 -0.2991 24 6 10.9439 -2.4137 0.4820 25 6 9.4362 -2.5153 0.4698 26 1 -0.4850 0.8401 0.0004 27 1 -0.1566 -1.4390 1.5593 28 1 -1.2913 -3.5340 2.1556 29 1 -0.4601 -5.6821 1.2905 30 1 1.5127 -5.7556 -0.1771 31 1 3.0269 -2.8130 -1.6900 32 1 2.9739 -4.5920 -1.6645 33 1 5.5414 -3.7791 -1.7682 34 1 6.6807 -4.6680 0.6584 35 1 6.7329 -2.8891 0.6328 36 1 7.9296 -2.9563 -1.5384 37 1 7.8770 -4.7353 -1.5121 38 1 10.5702 -5.2110 -0.8694 39 1 10.1569 -3.8383 -1.9385 40 1 12.5039 -3.4941 -0.4790 41 1 11.5157 -1.6914 1.0457 42 1 9.0109 -1.7438 -0.1723 43 1 9.0419 -2.4231 1.4818 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319862628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:02 Heat of formation + Delta-G solvation = 13.049533 kcal Electronic energy + Delta-G solvation = -23456.463891 eV Core-core repulsion = 20080.677801 eV Total energy + Delta-G solvation = -3375.786090 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.81994 -39.04082 -37.29402 -34.94308 -33.57866 -32.50575 -31.57733 -29.41643 -28.79139 -28.22300 -26.39248 -24.92155 -23.09662 -21.33902 -20.89165 -20.49732 -19.62523 -19.23338 -17.14009 -16.76700 -16.38219 -15.71791 -15.58112 -15.25272 -14.95058 -14.41429 -14.20372 -13.73297 -13.52659 -13.26222 -13.06687 -12.77033 -12.66214 -12.55079 -12.43489 -11.79473 -11.65154 -11.57863 -11.53530 -11.26195 -11.09929 -10.94325 -10.90902 -10.66159 -10.36429 -9.82679 -9.43893 -9.33721 -9.14056 -9.10293 -8.66654 -8.60408 -7.26235 -7.24385 -6.69684 -4.29970 1.84040 2.81610 2.99614 3.08290 3.13671 3.30362 3.38405 3.40835 3.96412 4.05469 4.38102 4.41517 4.70503 4.85354 4.85956 5.15201 5.20105 5.23482 5.29862 5.35493 5.54177 5.64891 5.83344 5.86668 5.99530 6.04918 6.08793 6.22489 6.26557 6.33609 6.47458 6.55953 6.57039 6.61788 6.84197 6.86220 7.12717 7.34463 7.47153 7.68873 7.92900 8.00620 8.12417 8.17881 8.36234 8.69376 8.92123 8.96252 9.06362 10.24491 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.014857 B = 0.003587 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.164602 B = 7804.021337 C = 9249.694845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.077 3.923 3 Si 0.901 3.099 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.456 4.456 8 H 0.073 0.927 9 C 0.129 3.871 10 C -0.159 4.159 11 C -0.107 4.107 12 C -0.239 4.239 13 C -0.082 4.082 14 C -0.180 4.180 15 C -0.070 4.070 16 C 0.515 3.485 17 O -0.519 6.519 18 N -0.747 5.747 19 C 0.127 3.873 20 C 0.034 3.966 21 N -0.500 5.500 22 C 0.053 3.947 23 C -0.174 4.174 24 C -0.164 4.164 25 C 0.047 3.953 26 H 0.279 0.721 27 H 0.117 0.883 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.394 0.606 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.061 0.939 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.205 -3.462 -5.291 18.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.486 4.486 8 H 0.091 0.909 9 C 0.126 3.874 10 C -0.179 4.179 11 C -0.126 4.126 12 C -0.259 4.259 13 C -0.100 4.100 14 C -0.182 4.182 15 C -0.110 4.110 16 C 0.302 3.698 17 O -0.392 6.392 18 N -0.402 5.402 19 C 0.003 3.997 20 C -0.094 4.094 21 N -0.224 5.224 22 C -0.074 4.074 23 C -0.192 4.192 24 C -0.182 4.182 25 C -0.081 4.081 26 H 0.090 0.910 27 H 0.135 0.865 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.227 0.773 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.079 0.921 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 16.802 -3.697 -3.967 17.656 hybrid contribution 0.571 1.428 -1.101 1.892 sum 17.373 -2.269 -5.068 18.239 Atomic orbital electron populations 1.69822 1.07451 1.28992 1.35912 1.25869 0.94681 1.01072 0.92395 0.86425 0.80829 0.81080 0.79065 1.19591 1.20075 1.18597 1.19454 0.97115 0.90986 1.41047 0.90854 1.17333 0.90764 0.91284 0.87994 1.21295 0.99011 0.96665 1.00895 1.20677 0.98693 0.93470 0.99757 1.20308 1.01603 0.96149 1.07817 1.20304 0.95947 0.95541 0.98196 1.19061 0.99311 0.94034 1.05824 1.20264 0.90530 1.02738 0.97466 1.21228 0.84233 0.74871 0.89462 1.90689 1.86750 1.47003 1.14763 1.46062 1.05736 1.78653 1.09772 1.21038 0.82396 1.02833 0.93450 1.22535 0.90063 1.01740 0.95105 1.65500 1.01557 1.25301 1.30092 1.22060 0.88802 1.00905 0.95651 1.23584 0.99111 0.97591 0.98961 1.23657 0.95857 0.99325 0.99402 1.22215 0.93650 0.90213 1.01989 0.91013 0.86533 0.89593 0.89670 0.89750 0.88623 0.90617 0.77271 0.91021 0.91865 0.93585 0.89968 0.89448 0.92466 0.84698 0.84689 0.92073 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.76 10.96 55.55 0.61 -20.15 16 2 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 3 Si 0.90 19.02 29.59 -169.99 -5.03 13.99 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.46 -12.15 8.14 -37.74 -0.31 -12.46 16 8 H 0.07 1.90 6.67 -52.48 -0.35 1.55 16 9 C 0.13 3.49 5.56 -106.83 -0.59 2.90 16 10 C -0.16 -4.33 8.68 -38.87 -0.34 -4.67 16 11 C -0.11 -2.67 10.02 -39.66 -0.40 -3.07 16 12 C -0.24 -5.69 10.05 -39.29 -0.39 -6.08 16 13 C -0.08 -1.92 9.66 -39.66 -0.38 -2.30 16 14 C -0.18 -4.41 4.43 -103.92 -0.46 -4.87 16 15 C -0.07 -1.38 5.18 -29.03 -0.15 -1.53 16 16 C 0.51 10.18 7.44 -10.98 -0.08 10.09 16 17 O -0.52 -12.77 16.03 5.55 0.09 -12.68 16 18 N -0.75 -10.90 5.56 -60.29 -0.33 -11.23 16 19 C 0.13 1.74 5.81 -4.04 -0.02 1.72 16 20 C 0.03 0.35 4.77 -3.82 -0.02 0.33 16 21 N -0.50 -5.29 5.52 -234.68 -1.29 -6.59 16 22 C 0.05 0.45 6.62 -4.04 -0.03 0.43 16 23 C -0.17 -1.37 10.96 -35.85 -0.39 -1.77 16 24 C -0.16 -1.39 10.95 -35.85 -0.39 -1.79 16 25 C 0.05 0.47 6.08 -4.04 -0.02 0.45 16 26 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 27 H 0.12 3.25 6.21 -52.49 -0.33 2.92 16 28 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 29 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.08 1.74 8.06 -52.48 -0.42 1.32 16 31 H 0.10 1.84 7.08 -51.93 -0.37 1.47 16 32 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 33 H 0.39 4.36 8.47 -40.82 -0.35 4.02 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.97 7.76 -51.93 -0.40 0.57 16 36 H 0.05 0.44 7.64 -51.93 -0.40 0.04 16 37 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.44 7.79 -51.93 -0.40 0.04 16 40 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.06 0.61 7.48 -51.93 -0.39 0.23 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 356.74 15.07 5.38 5.38 Total: -1.00 -31.90 356.74 -11.00 -42.90 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -6.34 Total: 9.15 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -4.08 Total: -20.77 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -1.02 Total: -37.97 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.90 -11.00 -42.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319862628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.949 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds