Wall clock time and date at job start Fri Apr 10 2020 20:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86802 * 119.99635 * 2 1 4 4 H 1.48501 * 109.47190 * 269.99805 * 3 2 1 5 5 H 1.48504 * 109.47261 * 30.00242 * 3 2 1 6 6 H 1.48505 * 109.46744 * 150.00133 * 3 2 1 7 7 C 1.39945 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99515 * 163.71055 * 7 2 1 9 9 C 1.41394 * 120.00412 * 343.71210 * 7 2 1 10 10 C 1.40729 * 120.24253 * 334.19229 * 9 7 2 11 11 C 1.37604 * 119.74523 * 180.31894 * 10 9 7 12 12 C 1.38658 * 120.24286 * 359.65658 * 11 10 9 13 13 C 1.38611 * 120.50170 * 0.02562 * 12 11 10 14 14 C 1.37638 * 120.25122 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.12542 * 179.97438 * 14 13 12 16 16 C 1.50708 * 109.46804 * 264.99682 * 15 14 13 17 17 O 1.21285 * 119.99764 * 359.97438 * 16 15 14 18 18 N 1.34769 * 119.99802 * 180.02562 * 16 15 14 19 19 C 1.46505 * 119.99982 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47218 * 179.97438 * 19 18 16 21 21 N 1.46901 * 109.47200 * 179.97438 * 20 19 18 22 22 C 1.48222 * 111.00399 * 170.00028 * 21 20 19 23 23 C 1.51115 * 105.44416 * 144.85558 * 22 21 20 24 24 C 1.31116 * 109.36703 * 343.13975 * 23 22 21 25 25 C 1.48229 * 111.00261 * 283.64184 * 21 20 19 26 26 H 0.97002 * 120.00056 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.13045 * 359.97438 * 10 9 7 28 28 H 1.07996 * 119.87660 * 179.67990 * 11 10 9 29 29 H 1.07999 * 119.74238 * 180.02562 * 12 11 10 30 30 H 1.08004 * 119.86993 * 179.97438 * 13 12 11 31 31 H 1.08999 * 109.46851 * 145.00218 * 15 14 13 32 32 H 1.08992 * 109.47579 * 24.99560 * 15 14 13 33 33 H 0.96997 * 120.00512 * 359.97438 * 18 16 15 34 34 H 1.09007 * 109.46923 * 59.99784 * 19 18 16 35 35 H 1.08996 * 109.47128 * 300.00376 * 19 18 16 36 36 H 1.08992 * 109.47119 * 60.00252 * 20 19 18 37 37 H 1.09001 * 109.47387 * 299.99731 * 20 19 18 38 38 H 1.09006 * 110.26852 * 263.87584 * 22 21 20 39 39 H 1.09005 * 110.26372 * 25.83503 * 22 21 20 40 40 H 1.07997 * 125.27279 * 163.08255 * 23 22 21 41 41 H 1.08000 * 125.24830 * 179.97438 * 24 23 22 42 42 H 1.09003 * 110.26249 * 334.07120 * 25 21 20 43 43 H 1.09002 * 110.26412 * 96.03637 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4396 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2120 0.0005 8 1 3.0555 -1.2308 -0.2618 9 6 1.3436 -2.4118 0.3445 10 6 0.2103 -2.3806 1.1782 11 6 -0.4245 -3.5550 1.5117 12 6 0.0445 -4.7653 1.0239 13 6 1.1559 -4.8072 0.1967 14 6 1.8072 -3.6450 -0.1492 15 6 3.0156 -3.6940 -1.0482 16 6 4.2663 -3.7191 -0.2077 17 8 4.1843 -3.6988 1.0022 18 7 5.4758 -3.7632 -0.8005 19 6 6.6916 -3.7871 0.0165 20 6 7.9185 -3.8369 -0.8962 21 7 9.1377 -3.8603 -0.0770 22 6 10.3307 -4.1483 -0.9080 23 6 11.4507 -3.3368 -0.2991 24 6 10.9439 -2.4137 0.4820 25 6 9.4362 -2.5153 0.4698 26 1 -0.4850 0.8401 0.0004 27 1 -0.1566 -1.4390 1.5593 28 1 -1.2913 -3.5340 2.1556 29 1 -0.4601 -5.6821 1.2905 30 1 1.5127 -5.7556 -0.1771 31 1 3.0269 -2.8130 -1.6900 32 1 2.9739 -4.5920 -1.6645 33 1 5.5414 -3.7791 -1.7682 34 1 6.6807 -4.6680 0.6584 35 1 6.7329 -2.8891 0.6328 36 1 7.9296 -2.9563 -1.5384 37 1 7.8770 -4.7353 -1.5121 38 1 10.5702 -5.2110 -0.8694 39 1 10.1569 -3.8383 -1.9385 40 1 12.5039 -3.4941 -0.4790 41 1 11.5157 -1.6914 1.0457 42 1 9.0109 -1.7438 -0.1723 43 1 9.0419 -2.4231 1.4818 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319862628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:01 Heat of formation + Delta-G solvation = -7.954948 kcal Electronic energy + Delta-G solvation = -23457.374714 eV Core-core repulsion = 20080.677801 eV Total energy + Delta-G solvation = -3376.696913 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.88561 -40.30597 -39.09393 -36.19827 -35.49397 -33.70077 -33.11528 -31.33958 -29.72480 -29.25372 -27.92198 -26.75642 -24.09399 -22.81629 -22.20934 -22.08352 -20.89238 -20.27351 -19.06536 -17.90339 -17.51872 -17.25949 -16.78687 -16.63154 -16.16604 -16.11763 -15.52455 -15.34563 -14.81521 -14.71014 -14.36955 -14.24217 -13.78498 -13.58189 -13.46566 -13.36430 -13.15782 -12.90124 -12.76808 -12.74338 -12.59993 -12.47292 -12.24593 -12.13404 -12.04233 -11.31558 -11.21001 -11.01729 -10.78498 -10.50606 -10.03050 -9.31712 -9.21848 -9.15429 -8.59096 -6.28834 0.99898 1.13926 1.23423 1.34870 1.46290 1.53343 1.84845 2.19507 2.22176 2.78775 3.12297 3.65864 3.73027 3.78478 3.97525 4.05859 4.17643 4.40540 4.41972 4.45054 4.49368 4.51808 4.58703 4.63238 4.69952 4.72264 4.82049 4.82956 4.94190 5.01270 5.08782 5.20543 5.37600 5.44017 5.50208 5.55959 5.56697 5.78547 5.89486 5.94281 6.04664 6.17672 6.22194 6.42818 6.67360 6.76130 6.99902 7.12228 7.46108 8.37437 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.014857 B = 0.003587 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.164602 B = 7804.021337 C = 9249.694845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.036 3.964 3 Si 0.971 3.029 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.483 4.483 8 H 0.071 0.929 9 C 0.095 3.905 10 C -0.195 4.195 11 C -0.118 4.118 12 C -0.243 4.243 13 C -0.092 4.092 14 C -0.188 4.188 15 C -0.068 4.068 16 C 0.516 3.484 17 O -0.576 6.576 18 N -0.723 5.723 19 C 0.131 3.869 20 C 0.047 3.953 21 N -0.520 5.520 22 C 0.049 3.951 23 C -0.167 4.167 24 C -0.179 4.179 25 C 0.042 3.958 26 H 0.286 0.714 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.416 0.584 34 H 0.055 0.945 35 H 0.041 0.959 36 H 0.057 0.943 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.159 0.841 41 H 0.150 0.850 42 H 0.058 0.942 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.228 -4.217 -7.150 20.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.178 4.178 3 Si 0.792 3.208 4 H -0.178 1.178 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.513 4.513 8 H 0.089 0.911 9 C 0.093 3.907 10 C -0.214 4.214 11 C -0.136 4.136 12 C -0.262 4.262 13 C -0.110 4.110 14 C -0.190 4.190 15 C -0.108 4.108 16 C 0.304 3.696 17 O -0.455 6.455 18 N -0.378 5.378 19 C 0.007 3.993 20 C -0.082 4.082 21 N -0.245 5.245 22 C -0.077 4.077 23 C -0.185 4.185 24 C -0.198 4.198 25 C -0.085 4.085 26 H 0.096 0.904 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.117 0.883 32 H 0.134 0.866 33 H 0.252 0.748 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.177 0.823 41 H 0.167 0.833 42 H 0.076 0.924 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 18.851 -4.468 -5.888 20.248 hybrid contribution -0.061 1.530 -0.520 1.617 sum 18.789 -2.938 -6.408 20.068 Atomic orbital electron populations 1.69883 1.08803 1.30196 1.36422 1.26663 0.95420 1.04153 0.91577 0.85381 0.78878 0.76766 0.79770 1.17778 1.19248 1.19388 1.19607 0.97080 0.91973 1.42618 0.91127 1.17746 0.91357 0.92884 0.88754 1.21311 1.00604 0.96816 1.02708 1.20955 0.99243 0.93400 1.00035 1.20731 1.01659 0.96748 1.07093 1.20758 0.95694 0.96705 0.97858 1.19570 1.00477 0.93429 1.05520 1.20285 0.88799 1.04793 0.96903 1.21189 0.85567 0.74275 0.88583 1.90672 1.87647 1.50060 1.17072 1.45766 1.04633 1.76369 1.10989 1.21018 0.83421 1.00990 0.93892 1.22403 0.88317 1.03231 0.94236 1.65443 1.02417 1.25546 1.31046 1.22167 0.88035 1.01561 0.95977 1.23856 1.00116 0.96597 0.97957 1.23760 0.94825 1.00546 1.00637 1.22213 0.95108 0.90148 1.01073 0.90372 0.88547 0.87692 0.86660 0.86428 0.88318 0.86635 0.74760 0.92620 0.94099 0.92468 0.87932 0.88635 0.91189 0.82339 0.83255 0.92386 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.37 10.96 21.83 0.24 -44.14 16 2 C 0.04 1.87 5.16 85.26 0.44 2.31 16 3 Si 0.97 39.53 29.59 68.60 2.03 41.56 16 4 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.48 -26.48 8.14 23.46 0.19 -26.29 16 8 H 0.07 3.76 6.67 -2.91 -0.02 3.74 16 9 C 0.09 5.30 5.56 -21.29 -0.12 5.18 16 10 C -0.19 -11.01 8.68 22.73 0.20 -10.81 16 11 C -0.12 -5.94 10.02 22.22 0.22 -5.72 16 12 C -0.24 -11.30 10.05 22.46 0.23 -11.07 16 13 C -0.09 -4.21 9.66 22.22 0.21 -4.00 16 14 C -0.19 -9.18 4.43 -19.41 -0.09 -9.27 16 15 C -0.07 -2.60 5.18 29.10 0.15 -2.45 16 16 C 0.52 20.12 7.44 87.66 0.65 20.77 16 17 O -0.58 -28.95 16.03 -3.04 -0.05 -29.00 16 18 N -0.72 -20.03 5.56 -463.05 -2.57 -22.61 16 19 C 0.13 3.53 5.81 86.38 0.50 4.03 16 20 C 0.05 0.86 4.77 86.30 0.41 1.27 16 21 N -0.52 -10.26 5.52 -896.40 -4.95 -15.21 16 22 C 0.05 0.71 6.62 85.43 0.57 1.28 16 23 C -0.17 -2.22 10.96 25.66 0.28 -1.94 16 24 C -0.18 -2.79 10.95 25.66 0.28 -2.51 16 25 C 0.04 0.83 6.08 85.43 0.52 1.35 16 26 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 27 H 0.10 5.69 6.21 -2.91 -0.02 5.67 16 28 H 0.10 4.70 8.06 -2.91 -0.02 4.67 16 29 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 30 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 31 H 0.10 3.71 7.08 -2.39 -0.02 3.69 16 32 H 0.12 3.41 8.05 -2.39 -0.02 3.40 16 33 H 0.42 8.03 8.47 -92.71 -0.79 7.24 16 34 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.04 1.29 7.76 -2.39 -0.02 1.28 16 36 H 0.06 0.95 7.64 -2.39 -0.02 0.93 16 37 H 0.10 1.49 8.08 -2.39 -0.02 1.47 16 38 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.07 0.85 7.79 -2.38 -0.02 0.83 16 40 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 41 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 42 H 0.06 1.14 7.48 -2.39 -0.02 1.12 16 43 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -72.12 356.74 -0.42 -72.54 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: 0.22 Total: 34.72 kcal Atomic # 6 Polarization: -42.51 SS G_CDS: 4.65 Total: -37.86 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -7.28 Total: -81.95 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.05 Total: -29.00 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -72.12 -0.42 -72.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319862628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.585 kcal (2) G-P(sol) polarization free energy of solvation -72.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds