Wall clock time and date at job start Fri Apr 10 2020 20:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99884 * 2 1 4 4 N 1.46493 * 109.47247 * 124.99624 * 3 2 1 5 5 N 1.40582 * 127.38304 * 275.43363 * 4 3 2 6 6 N 1.28912 * 106.81813 * 180.02562 * 5 4 3 7 7 N 1.28424 * 110.31365 * 359.73493 * 6 5 4 8 8 C 1.31473 * 110.50842 * 0.44839 * 7 6 5 9 9 N 1.38378 * 126.43574 * 179.81901 * 8 7 6 10 10 C 1.46899 * 111.00465 * 298.84060 * 9 8 7 11 11 C 1.50711 * 109.46909 * 288.36774 * 10 9 8 12 12 H 1.07997 * 120.00207 * 355.48684 * 11 10 9 13 13 C 1.37878 * 119.99589 * 175.49056 * 11 10 9 14 14 N 1.31514 * 119.99587 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00239 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.46910 * 90.00408 * 15 13 11 17 17 H 1.48505 * 109.47049 * 210.00498 * 15 13 11 18 18 H 1.48503 * 109.47010 * 330.00342 * 15 13 11 19 19 C 1.46901 * 111.00283 * 62.79741 * 9 8 7 20 20 C 1.50703 * 109.47206 * 169.99361 * 19 9 8 21 21 C 1.38230 * 119.61397 * 95.00167 * 20 19 9 22 22 C 1.38624 * 119.15920 * 180.02562 * 21 20 19 23 23 C 1.38676 * 118.42157 * 0.02562 * 22 21 20 24 24 C 1.38182 * 119.16145 * 0.27589 * 23 22 21 25 25 N 1.31848 * 119.62036 * 275.02341 * 20 19 9 26 26 H 1.07999 * 119.99853 * 179.97438 * 1 2 3 27 27 H 1.07996 * 120.00354 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.99845 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47104 * 4.99232 * 3 2 1 30 30 H 1.09000 * 109.46638 * 244.99878 * 3 2 1 31 31 H 1.09000 * 109.47145 * 48.36351 * 10 9 8 32 32 H 1.08996 * 109.47298 * 168.37044 * 10 9 8 33 33 H 0.97003 * 119.99887 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.47071 * 49.99789 * 19 9 8 35 35 H 1.08989 * 109.46947 * 289.99715 * 19 9 8 36 36 H 1.07996 * 120.41806 * 0.04563 * 21 20 19 37 37 H 1.08003 * 120.78766 * 180.02562 * 22 21 20 38 38 H 1.08001 * 120.41833 * 180.02562 * 23 22 21 39 39 H 1.08002 * 119.61363 * 179.70505 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 7 2.7143 1.7067 2.4573 6 7 3.8137 1.5838 3.1191 7 7 4.7531 1.1660 2.3495 8 6 4.3059 1.0022 1.1240 9 7 5.0383 0.5683 0.0331 10 6 6.1448 1.4896 -0.2584 11 6 5.5946 2.7689 -0.8347 12 1 4.5379 2.8588 -1.0387 13 6 6.4405 3.8246 -1.1014 14 7 5.9604 4.9411 -1.6038 15 14 8.2682 3.6693 -0.7479 16 1 8.9607 3.1346 -1.9477 17 1 8.8223 5.0052 -0.4107 18 1 8.4744 2.7449 0.3959 19 6 5.5329 -0.7992 0.2411 20 6 6.1086 -1.3267 -1.0479 21 6 7.4667 -1.2220 -1.2828 22 6 7.9862 -1.7099 -2.4718 23 6 7.1161 -2.2870 -3.3846 24 6 5.7691 -2.3509 -3.0832 25 7 5.3110 -1.8824 -1.9386 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1317 0.0894 30 1 2.6213 1.4026 -0.9314 31 1 6.6868 1.7090 0.6615 32 1 6.8215 1.0286 -0.9778 33 1 6.5554 5.6839 -1.7911 34 1 4.7097 -1.4387 0.5599 35 1 6.3065 -0.7929 1.0088 36 1 8.1150 -0.7661 -0.5491 37 1 9.0433 -1.6421 -2.6823 38 1 7.4862 -2.6779 -4.3209 39 1 5.0844 -2.7946 -3.7908 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332473963.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:05 Heat of formation + Delta-G solvation = 196.753186 kcal Electronic energy + Delta-G solvation = -24392.611140 eV Core-core repulsion = 20953.543445 eV Total energy + Delta-G solvation = -3439.067694 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.139 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.38687 -40.15018 -37.32813 -35.87636 -32.85541 -32.63747 -32.36965 -31.90758 -30.37510 -28.41430 -27.05694 -25.61566 -23.51729 -22.70420 -22.55641 -21.97540 -20.43385 -19.83525 -17.21152 -17.15205 -16.68958 -16.30925 -16.07299 -15.93903 -15.31208 -14.92522 -14.49681 -14.04308 -13.80432 -13.54081 -13.43940 -13.16840 -13.06336 -12.56683 -12.52782 -12.11429 -11.89074 -11.77467 -11.53870 -11.43413 -10.92692 -10.69943 -10.53454 -10.15236 -9.95005 -9.77247 -9.64964 -9.55092 -9.51871 -9.31380 -8.92831 -8.73907 -8.29435 -6.23210 -4.23809 1.13049 1.38419 1.56884 1.87066 2.61604 2.85167 3.16666 3.25903 3.26981 3.74282 4.24528 4.27443 4.36250 4.74016 4.80093 4.85930 4.90065 5.04812 5.12613 5.13993 5.19712 5.30237 5.46908 5.56742 5.66639 5.75886 5.80073 5.82340 5.95464 5.98151 6.18074 6.23836 6.29076 6.48905 6.51708 6.62387 6.73097 6.76430 7.08572 7.39930 7.58710 8.12016 8.33593 8.77841 9.05023 9.35381 10.89242 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.009263 B = 0.007574 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.032314 B = 3696.083186 C = 5472.359105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.166 4.166 3 C 0.157 3.843 4 N -0.355 5.355 5 N -0.096 5.096 6 N -0.045 5.045 7 N -0.361 5.361 8 C 0.457 3.543 9 N -0.454 5.454 10 C 0.162 3.838 11 C -0.522 4.522 12 H 0.077 0.923 13 C 0.078 3.922 14 N -0.890 5.890 15 Si 0.868 3.132 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.261 1.261 19 C 0.113 3.887 20 C 0.146 3.854 21 C -0.157 4.157 22 C -0.076 4.076 23 C -0.175 4.175 24 C 0.098 3.902 25 N -0.464 5.464 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.126 0.874 31 H 0.019 0.981 32 H 0.045 0.955 33 H 0.267 0.733 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.747 -14.767 -2.659 15.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.035 3.965 4 N -0.152 5.152 5 N -0.083 5.083 6 N -0.042 5.042 7 N -0.218 5.218 8 C 0.091 3.909 9 N -0.181 5.181 10 C 0.038 3.962 11 C -0.560 4.560 12 H 0.095 0.905 13 C -0.126 4.126 14 N -0.528 5.528 15 Si 0.694 3.306 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.186 1.186 19 C -0.015 4.015 20 C 0.008 3.992 21 C -0.177 4.177 22 C -0.102 4.102 23 C -0.195 4.195 24 C -0.059 4.059 25 N -0.173 5.173 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.134 0.866 29 H 0.120 0.880 30 H 0.144 0.856 31 H 0.037 0.963 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.046 -14.269 -1.595 14.677 hybrid contribution 2.281 0.151 -0.731 2.400 sum -0.765 -14.117 -2.326 14.328 Atomic orbital electron populations 1.23898 0.95454 1.02330 0.98716 1.23080 0.96180 0.98048 1.01247 1.21028 0.91652 0.96965 0.86818 1.51431 1.08598 1.45654 1.09554 1.82435 1.18764 1.21417 0.85649 1.77809 0.93875 1.09440 1.23036 1.74829 1.24000 1.22571 1.00415 1.22784 0.84196 0.93264 0.90653 1.59007 1.27519 1.02668 1.28942 1.20586 0.87256 0.91514 0.96855 1.20828 0.96945 0.95397 1.42878 0.90472 1.24807 0.98647 0.94855 0.94287 1.69865 1.35700 1.04004 1.43233 0.86947 0.85802 0.78388 0.79429 1.19829 1.20744 1.18559 1.20921 0.99949 0.88099 0.92508 1.20785 0.89774 0.93944 0.94723 1.22037 0.96451 1.00430 0.98792 1.21535 1.00377 0.95104 0.93175 1.22105 0.95161 1.01682 1.00597 1.22700 0.93676 0.95901 0.93635 1.67422 1.39239 1.08634 1.02051 0.87864 0.88048 0.86564 0.88029 0.85597 0.96291 0.93683 0.92325 0.89431 0.91376 0.84748 0.84920 0.85044 0.82916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 14.32 29.01 0.42 -1.35 16 2 C -0.17 -2.16 9.85 -36.03 -0.35 -2.51 16 3 C 0.16 2.47 6.95 -5.20 -0.04 2.43 16 4 N -0.36 -6.86 3.67 -63.04 -0.23 -7.09 16 5 N -0.10 -1.96 13.93 60.35 0.84 -1.12 16 6 N -0.05 -0.99 13.38 60.35 0.81 -0.18 16 7 N -0.36 -7.94 11.93 30.10 0.36 -7.58 16 8 C 0.46 9.49 5.95 -320.42 -1.91 7.59 16 9 N -0.45 -9.03 4.43 -177.59 -0.79 -9.82 16 10 C 0.16 3.70 3.65 -4.97 -0.02 3.68 16 11 C -0.52 -14.17 9.38 -34.43 -0.32 -14.49 16 12 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 13 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 14 N -0.89 -26.46 13.96 55.43 0.77 -25.68 16 15 Si 0.87 20.64 27.56 -169.99 -4.68 15.96 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.26 -5.98 6.41 56.52 0.36 -5.61 16 19 C 0.11 1.86 5.21 -4.97 -0.03 1.84 16 20 C 0.15 2.29 5.70 -82.59 -0.47 1.82 16 21 C -0.16 -2.22 8.03 -39.44 -0.32 -2.53 16 22 C -0.08 -0.91 10.18 -39.28 -0.40 -1.31 16 23 C -0.18 -1.95 10.11 -39.44 -0.40 -2.35 16 24 C 0.10 1.22 11.18 -17.55 -0.20 1.03 16 25 N -0.46 -7.12 10.27 -9.47 -0.10 -7.22 16 26 H 0.10 0.92 8.06 -52.49 -0.42 0.49 16 27 H 0.10 0.98 7.84 -52.49 -0.41 0.57 16 28 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 29 H 0.10 1.44 7.79 -51.93 -0.40 1.04 16 30 H 0.13 2.13 8.10 -51.93 -0.42 1.71 16 31 H 0.02 0.46 6.57 -51.93 -0.34 0.12 16 32 H 0.05 0.99 5.22 -51.93 -0.27 0.72 16 33 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.09 1.35 8.05 -51.93 -0.42 0.93 16 35 H 0.07 1.07 8.02 -51.94 -0.42 0.65 16 36 H 0.13 1.77 8.01 -52.49 -0.42 1.35 16 37 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 38 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 341.98 15.07 5.15 5.15 Total: -1.00 -32.54 341.98 -6.81 -39.35 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.82 Total: 2.32 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -4.13 Total: -4.09 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 1.67 Total: -58.70 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.68 Total: 15.96 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.54 -6.81 -39.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332473963.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.103 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 203.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 196.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds