Wall clock time and date at job start Fri Apr 10 2020 20:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99884 * 2 1 4 4 N 1.46493 * 109.47247 * 124.99624 * 3 2 1 5 5 N 1.40582 * 127.38304 * 275.43363 * 4 3 2 6 6 N 1.28912 * 106.81813 * 180.02562 * 5 4 3 7 7 N 1.28424 * 110.31365 * 359.73493 * 6 5 4 8 8 C 1.31473 * 110.50842 * 0.44839 * 7 6 5 9 9 N 1.38378 * 126.43574 * 179.81901 * 8 7 6 10 10 C 1.46899 * 111.00465 * 298.84060 * 9 8 7 11 11 C 1.50711 * 109.46909 * 288.36774 * 10 9 8 12 12 H 1.07997 * 120.00207 * 355.48684 * 11 10 9 13 13 C 1.37878 * 119.99589 * 175.49056 * 11 10 9 14 14 N 1.31514 * 119.99587 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00239 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.46910 * 90.00408 * 15 13 11 17 17 H 1.48505 * 109.47049 * 210.00498 * 15 13 11 18 18 H 1.48503 * 109.47010 * 330.00342 * 15 13 11 19 19 C 1.46901 * 111.00283 * 62.79741 * 9 8 7 20 20 C 1.50703 * 109.47206 * 169.99361 * 19 9 8 21 21 C 1.38230 * 119.61397 * 95.00167 * 20 19 9 22 22 C 1.38624 * 119.15920 * 180.02562 * 21 20 19 23 23 C 1.38676 * 118.42157 * 0.02562 * 22 21 20 24 24 C 1.38182 * 119.16145 * 0.27589 * 23 22 21 25 25 N 1.31848 * 119.62036 * 275.02341 * 20 19 9 26 26 H 1.07999 * 119.99853 * 179.97438 * 1 2 3 27 27 H 1.07996 * 120.00354 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.99845 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47104 * 4.99232 * 3 2 1 30 30 H 1.09000 * 109.46638 * 244.99878 * 3 2 1 31 31 H 1.09000 * 109.47145 * 48.36351 * 10 9 8 32 32 H 1.08996 * 109.47298 * 168.37044 * 10 9 8 33 33 H 0.97003 * 119.99887 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.47071 * 49.99789 * 19 9 8 35 35 H 1.08989 * 109.46947 * 289.99715 * 19 9 8 36 36 H 1.07996 * 120.41806 * 0.04563 * 21 20 19 37 37 H 1.08003 * 120.78766 * 180.02562 * 22 21 20 38 38 H 1.08001 * 120.41833 * 180.02562 * 23 22 21 39 39 H 1.08002 * 119.61363 * 179.70505 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 7 2.7143 1.7067 2.4573 6 7 3.8137 1.5838 3.1191 7 7 4.7531 1.1660 2.3495 8 6 4.3059 1.0022 1.1240 9 7 5.0383 0.5683 0.0331 10 6 6.1448 1.4896 -0.2584 11 6 5.5946 2.7689 -0.8347 12 1 4.5379 2.8588 -1.0387 13 6 6.4405 3.8246 -1.1014 14 7 5.9604 4.9411 -1.6038 15 14 8.2682 3.6693 -0.7479 16 1 8.9607 3.1346 -1.9477 17 1 8.8223 5.0052 -0.4107 18 1 8.4744 2.7449 0.3959 19 6 5.5329 -0.7992 0.2411 20 6 6.1086 -1.3267 -1.0479 21 6 7.4667 -1.2220 -1.2828 22 6 7.9862 -1.7099 -2.4718 23 6 7.1161 -2.2870 -3.3846 24 6 5.7691 -2.3509 -3.0832 25 7 5.3110 -1.8824 -1.9386 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1317 0.0894 30 1 2.6213 1.4026 -0.9314 31 1 6.6868 1.7090 0.6615 32 1 6.8215 1.0286 -0.9778 33 1 6.5554 5.6839 -1.7911 34 1 4.7097 -1.4387 0.5599 35 1 6.3065 -0.7929 1.0088 36 1 8.1150 -0.7661 -0.5491 37 1 9.0433 -1.6421 -2.6823 38 1 7.4862 -2.6779 -4.3209 39 1 5.0844 -2.7946 -3.7908 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332473963.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:04 Heat of formation + Delta-G solvation = 175.339114 kcal Electronic energy + Delta-G solvation = -24393.539724 eV Core-core repulsion = 20953.543445 eV Total energy + Delta-G solvation = -3439.996278 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.139 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.00625 -41.19674 -38.84105 -37.16648 -34.86752 -33.89826 -33.47841 -33.12458 -31.93620 -30.14710 -28.35007 -26.99972 -24.84397 -24.20267 -24.11229 -23.16031 -21.88164 -21.01210 -19.17944 -18.63598 -17.86559 -17.65616 -17.57196 -17.07389 -16.42213 -16.38964 -15.98709 -15.65845 -15.17677 -14.78856 -14.73060 -14.43006 -14.36716 -14.13077 -13.91502 -13.64087 -13.37123 -13.12510 -12.79324 -12.63312 -12.50185 -12.47268 -12.19479 -12.00025 -11.69883 -11.37015 -11.15274 -10.87366 -10.72365 -10.57967 -10.33639 -10.05192 -9.80648 -8.37119 -6.42596 -0.07011 0.13479 0.43238 0.61699 1.17060 1.28985 1.34395 1.42034 1.45009 2.27669 2.46230 2.97040 3.06179 3.23936 3.34264 3.64274 3.73893 3.78680 4.01612 4.09889 4.14965 4.24317 4.30782 4.37919 4.41571 4.51325 4.55864 4.61364 4.74148 4.79612 4.87204 4.92146 5.01921 5.22650 5.31074 5.32684 5.52858 5.55116 5.63662 5.82534 5.94534 6.24783 6.59793 7.11777 7.20292 7.40136 8.78487 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.009263 B = 0.007574 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.032314 B = 3696.083186 C = 5472.359105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.192 4.192 3 C 0.153 3.847 4 N -0.350 5.350 5 N -0.097 5.097 6 N -0.060 5.060 7 N -0.378 5.378 8 C 0.447 3.553 9 N -0.454 5.454 10 C 0.177 3.823 11 C -0.525 4.525 12 H 0.040 0.960 13 C 0.019 3.981 14 N -0.938 5.938 15 Si 0.930 3.070 16 H -0.250 1.250 17 H -0.285 1.285 18 H -0.247 1.247 19 C 0.116 3.884 20 C 0.120 3.880 21 C -0.173 4.173 22 C -0.079 4.079 23 C -0.164 4.164 24 C 0.086 3.914 25 N -0.491 5.491 26 H 0.129 0.871 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.008 0.992 32 H 0.062 0.938 33 H 0.268 0.732 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.139 0.861 37 H 0.163 0.837 38 H 0.169 0.831 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.898 -16.742 -3.778 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.211 4.211 3 C 0.033 3.967 4 N -0.147 5.147 5 N -0.084 5.084 6 N -0.056 5.056 7 N -0.236 5.236 8 C 0.080 3.920 9 N -0.181 5.181 10 C 0.052 3.948 11 C -0.563 4.563 12 H 0.058 0.942 13 C -0.180 4.180 14 N -0.578 5.578 15 Si 0.752 3.248 16 H -0.175 1.175 17 H -0.210 1.210 18 H -0.171 1.171 19 C -0.011 4.011 20 C -0.018 4.018 21 C -0.193 4.193 22 C -0.104 4.104 23 C -0.184 4.184 24 C -0.072 4.072 25 N -0.201 5.201 26 H 0.147 0.853 27 H 0.132 0.868 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.125 0.875 31 H 0.026 0.974 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.157 0.843 37 H 0.181 0.819 38 H 0.187 0.813 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.218 -16.278 -2.719 16.652 hybrid contribution 1.832 0.704 -0.487 2.022 sum -0.386 -15.574 -3.206 15.905 Atomic orbital electron populations 1.24220 0.94442 1.04152 0.94264 1.22837 0.96876 0.96207 1.05198 1.21254 0.91276 0.99353 0.84837 1.51723 1.08826 1.44366 1.09809 1.82336 1.18583 1.21191 0.86246 1.77763 0.94146 1.10265 1.23475 1.74744 1.24614 1.23191 1.01031 1.22929 0.84857 0.93598 0.90612 1.58949 1.26707 1.03682 1.28806 1.20275 0.87934 0.90397 0.96196 1.21063 0.95420 0.97426 1.42433 0.94203 1.25708 1.03789 0.94381 0.94103 1.70015 1.37573 1.05075 1.45135 0.85960 0.79756 0.78531 0.80524 1.17459 1.21049 1.17056 1.20980 1.00269 0.85956 0.93899 1.20661 0.90619 0.95746 0.94731 1.22210 0.95904 1.01130 1.00080 1.21963 1.02107 0.94104 0.92252 1.22541 0.94364 0.99941 1.01550 1.23270 0.95234 0.95518 0.93129 1.67359 1.40093 1.09498 1.03173 0.85322 0.86769 0.87078 0.86763 0.87528 0.97388 0.92044 0.92272 0.89034 0.90815 0.84299 0.81937 0.81342 0.80300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 14.32 67.78 0.97 -1.55 16 2 C -0.19 -4.89 9.85 25.65 0.25 -4.63 16 3 C 0.15 4.93 6.95 85.64 0.60 5.52 16 4 N -0.35 -13.85 3.67 -353.37 -1.30 -15.15 16 5 N -0.10 -4.01 13.93 37.02 0.52 -3.49 16 6 N -0.06 -2.68 13.38 37.02 0.50 -2.18 16 7 N -0.38 -16.94 11.93 -58.70 -0.70 -17.64 16 8 C 0.45 18.98 5.95 260.65 1.55 20.53 16 9 N -0.45 -18.39 4.43 -715.78 -3.17 -21.55 16 10 C 0.18 8.13 3.65 85.56 0.31 8.44 16 11 C -0.53 -29.22 9.38 25.60 0.24 -28.98 16 12 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 13 C 0.02 1.09 5.47 84.65 0.46 1.55 16 14 N -0.94 -57.24 13.96 21.45 0.30 -56.94 16 15 Si 0.93 42.20 27.56 68.60 1.89 44.10 16 16 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 18 H -0.25 -10.56 6.41 99.48 0.64 -9.93 16 19 C 0.12 3.84 5.21 85.56 0.45 4.28 16 20 C 0.12 3.68 5.70 42.56 0.24 3.92 16 21 C -0.17 -4.59 8.03 22.36 0.18 -4.41 16 22 C -0.08 -1.63 10.18 22.47 0.23 -1.40 16 23 C -0.16 -3.06 10.11 22.36 0.23 -2.84 16 24 C 0.09 1.94 11.18 84.67 0.95 2.88 16 25 N -0.49 -14.63 10.27 -183.88 -1.89 -16.52 16 26 H 0.13 1.85 8.06 -2.91 -0.02 1.82 16 27 H 0.11 1.90 7.84 -2.91 -0.02 1.88 16 28 H 0.11 2.94 8.06 -2.91 -0.02 2.92 16 29 H 0.11 3.29 7.79 -2.39 -0.02 3.27 16 30 H 0.11 3.83 8.10 -2.39 -0.02 3.81 16 31 H 0.01 0.40 6.57 -2.39 -0.02 0.38 16 32 H 0.06 2.64 5.22 -2.39 -0.01 2.63 16 33 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.09 2.88 8.05 -2.38 -0.02 2.86 16 35 H 0.07 2.32 8.02 -2.39 -0.02 2.30 16 36 H 0.14 3.43 8.01 -2.91 -0.02 3.41 16 37 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.18 2.88 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -72.54 341.98 3.79 -68.75 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.99 Total: 17.31 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 6.65 Total: 3.32 kcal Atomic # 7 Polarization: -127.74 SS G_CDS: -5.74 Total: -133.48 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.89 Total: 44.10 kcal Total: -72.54 3.79 -68.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332473963.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.093 kcal (2) G-P(sol) polarization free energy of solvation -72.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds