Wall clock time and date at job start Fri Apr 10 2020 20:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50705 * 119.99843 * 2 1 4 4 N 1.46891 * 109.47398 * 124.72385 * 3 2 1 5 5 C 1.46904 * 111.00021 * 69.31255 * 4 3 2 6 6 C 1.50706 * 109.46378 * 74.41167 * 5 4 3 7 7 H 1.08001 * 120.00317 * 4.38943 * 6 5 4 8 8 C 1.37876 * 119.99621 * 184.38739 * 6 5 4 9 9 N 1.31516 * 120.00167 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00152 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47161 * 60.00255 * 10 8 6 12 12 H 1.48499 * 109.47363 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47187 * 300.00501 * 10 8 6 14 14 C 1.38382 * 111.00029 * 305.36409 * 4 3 2 15 15 N 1.31480 * 126.44044 * 105.10313 * 14 4 3 16 16 N 1.28422 * 110.50839 * 179.97438 * 15 14 4 17 17 N 1.28903 * 110.31670 * 359.97438 * 16 15 14 18 18 N 1.35314 * 126.44038 * 284.79172 * 14 4 3 19 19 C 1.46497 * 127.37980 * 0.02562 * 18 14 4 20 20 C 1.50704 * 109.46780 * 266.76147 * 19 18 14 21 21 C 1.38674 * 120.41844 * 94.95798 * 20 19 18 22 22 C 1.38625 * 118.41975 * 179.97438 * 21 20 19 23 23 C 1.38227 * 119.16195 * 0.02562 * 22 21 20 24 24 N 1.31856 * 120.76192 * 0.02562 * 23 22 21 25 25 C 1.31880 * 121.72415 * 359.70278 * 24 23 22 26 26 H 1.08002 * 120.00098 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.99440 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.00633 * 179.72571 * 2 1 3 29 29 H 1.08997 * 109.47254 * 244.72479 * 3 2 1 30 30 H 1.09007 * 109.46997 * 4.72492 * 3 2 1 31 31 H 1.09003 * 109.47319 * 194.40448 * 5 4 3 32 32 H 1.08994 * 109.47270 * 314.41232 * 5 4 3 33 33 H 0.97002 * 120.00374 * 179.97438 * 9 8 6 34 34 H 1.09006 * 109.47313 * 26.76048 * 19 18 14 35 35 H 1.08998 * 109.47224 * 146.75957 * 19 18 14 36 36 H 1.08003 * 120.78896 * 359.97438 * 21 20 19 37 37 H 1.08004 * 120.41721 * 180.02562 * 22 21 20 38 38 H 1.08000 * 119.61888 * 179.97438 * 23 22 21 39 39 H 1.08005 * 119.61723 * 180.31756 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9915 1.3349 1.1382 5 6 4.0887 0.3767 0.9481 6 6 5.0520 0.9136 -0.0791 7 1 4.9064 1.9009 -0.4919 8 6 6.1192 0.1443 -0.4917 9 7 6.2963 -1.0581 0.0107 10 14 7.3128 0.8094 -1.7654 11 1 7.9436 2.0517 -1.2515 12 1 8.3636 -0.2044 -2.0360 13 1 6.5799 1.1095 -3.0216 14 6 2.3255 1.0963 2.3275 15 7 2.3521 -0.0160 3.0281 16 7 1.6240 0.0972 4.0798 17 7 1.0881 1.2685 4.1293 18 7 1.5290 1.9660 2.9911 19 6 1.1957 3.3392 2.6049 20 6 2.1591 4.2937 3.2621 21 6 3.2872 4.7305 2.5842 22 6 4.1451 5.6087 3.2280 23 6 3.8499 6.0165 4.5153 24 7 2.7681 5.5797 5.1298 25 6 1.9272 4.7481 4.5463 26 1 -0.5400 0.9353 0.0004 27 1 -0.5399 -0.9354 -0.0004 28 1 1.8501 -0.9352 0.0045 29 1 2.6252 1.4005 -0.9292 30 1 1.3581 2.1319 0.0847 31 1 4.6106 0.2295 1.8937 32 1 3.6843 -0.5753 0.6043 33 1 7.0469 -1.5995 -0.2799 34 1 1.2668 3.4395 1.5218 35 1 0.1798 3.5703 2.9251 36 1 3.4926 4.3944 1.5785 37 1 5.0329 5.9696 2.7300 38 1 4.5134 6.7002 5.0240 39 1 1.0487 4.4158 5.0795 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333704688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:08 Heat of formation + Delta-G solvation = 191.648816 kcal Electronic energy + Delta-G solvation = -24366.759338 eV Core-core repulsion = 20927.470302 eV Total energy + Delta-G solvation = -3439.289036 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.139 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.51010 -40.23435 -37.91878 -35.45867 -33.34615 -32.67422 -32.44263 -31.55359 -30.57940 -27.51849 -27.34595 -25.39609 -23.77390 -23.20909 -22.94056 -21.70074 -20.80933 -19.54075 -17.43278 -17.03548 -16.50321 -16.41684 -16.34932 -16.10511 -15.24507 -14.91215 -14.31485 -14.04291 -13.98019 -13.82088 -13.61411 -13.30550 -13.09319 -12.63773 -12.31463 -12.10265 -11.77782 -11.68585 -11.37066 -11.18248 -10.93095 -10.80934 -10.45646 -10.40611 -10.21972 -9.91838 -9.84188 -9.59271 -9.53168 -9.27997 -9.21999 -8.61922 -8.05559 -6.19025 -4.25067 0.79895 1.18971 1.45730 2.18366 2.42250 2.83245 3.21640 3.27711 3.28519 3.70858 4.08819 4.23539 4.30851 4.36951 4.52455 4.80351 4.87123 4.98430 5.04179 5.10038 5.15108 5.16463 5.35553 5.40898 5.58024 5.61458 5.77010 5.80886 6.03285 6.05297 6.08518 6.11877 6.22441 6.55164 6.76434 6.80696 6.93615 7.09583 7.41859 7.56671 7.82401 7.84314 8.12639 8.78445 9.02461 9.39585 10.90679 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.011645 B = 0.005819 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.926408 B = 4810.518578 C = 6237.298469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.173 4.173 3 C 0.090 3.910 4 N -0.452 5.452 5 C 0.203 3.797 6 C -0.524 4.524 7 H 0.066 0.934 8 C 0.063 3.937 9 N -0.886 5.886 10 Si 0.901 3.099 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.445 3.555 15 N -0.350 5.350 16 N -0.038 5.038 17 N -0.106 5.106 18 N -0.389 5.389 19 C 0.180 3.820 20 C -0.172 4.172 21 C -0.038 4.038 22 C -0.174 4.174 23 C 0.106 3.894 24 N -0.491 5.491 25 C 0.126 3.874 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.026 0.974 33 H 0.266 0.734 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.147 0.853 37 H 0.139 0.861 38 H 0.156 0.844 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.449 12.284 0.900 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.192 4.192 3 C -0.036 4.036 4 N -0.176 5.176 5 C 0.080 3.920 6 C -0.562 4.562 7 H 0.084 0.916 8 C -0.140 4.140 9 N -0.524 5.524 10 Si 0.728 3.272 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.080 3.920 15 N -0.208 5.208 16 N -0.034 5.034 17 N -0.092 5.092 18 N -0.188 5.188 19 C 0.057 3.943 20 C -0.175 4.175 21 C -0.064 4.064 22 C -0.194 4.194 23 C -0.051 4.051 24 N -0.199 5.199 25 C -0.032 4.032 26 H 0.108 0.892 27 H 0.114 0.886 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.165 0.835 37 H 0.157 0.843 38 H 0.173 0.827 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.619 12.068 2.841 15.692 hybrid contribution 0.900 -0.024 -2.207 2.383 sum -8.719 12.044 0.635 14.883 Atomic orbital electron populations 1.23719 0.95745 1.01341 1.02428 1.23763 0.96423 1.00667 0.98383 1.21445 0.93659 0.93846 0.94660 1.59544 1.08986 1.53138 0.95948 1.19982 0.84832 0.88450 0.98729 1.20944 1.09700 1.02180 1.23400 0.91616 1.24950 0.97702 0.94728 0.96647 1.69958 1.30289 1.09415 1.42716 0.86520 0.80543 0.78637 0.81467 1.20140 1.21188 1.20099 1.23677 0.88281 0.84847 0.95176 1.75088 1.21661 1.19742 1.04301 1.77846 1.03560 1.09932 1.12077 1.82393 1.21598 1.01859 1.03387 1.51445 1.36955 1.12730 1.17662 1.20577 0.98400 0.74704 1.00654 1.20873 0.98550 1.00830 0.97238 1.21731 0.91335 0.92586 1.00772 1.22210 1.01030 0.99431 0.96724 1.22864 0.93529 0.96646 0.92077 1.67744 1.03956 1.11287 1.36902 1.22693 0.97647 0.91821 0.91064 0.89197 0.88622 0.86038 0.86444 0.91531 0.94150 0.95565 0.92435 0.86971 0.87244 0.83545 0.84297 0.82675 0.82674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.66 14.32 29.01 0.42 -2.25 16 2 C -0.17 -2.79 8.06 -36.02 -0.29 -3.08 16 3 C 0.09 1.42 5.62 -4.98 -0.03 1.39 16 4 N -0.45 -8.53 4.65 -177.59 -0.83 -9.36 16 5 C 0.20 4.85 4.14 -4.97 -0.02 4.83 16 6 C -0.52 -13.09 8.49 -34.44 -0.29 -13.38 16 7 H 0.07 1.56 7.81 -52.49 -0.41 1.15 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -24.88 13.29 55.43 0.74 -24.14 16 10 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 13 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 14 C 0.45 8.47 5.82 -320.40 -1.87 6.61 16 15 N -0.35 -7.61 11.28 30.10 0.34 -7.27 16 16 N -0.04 -0.78 13.38 60.35 0.81 0.02 16 17 N -0.11 -1.91 13.93 60.35 0.84 -1.07 16 18 N -0.39 -6.24 3.67 -63.04 -0.23 -6.47 16 19 C 0.18 2.05 6.66 -5.19 -0.03 2.01 16 20 C -0.17 -2.09 5.48 -104.48 -0.57 -2.66 16 21 C -0.04 -0.46 9.84 -39.28 -0.39 -0.85 16 22 C -0.17 -1.95 10.11 -39.44 -0.40 -2.35 16 23 C 0.11 1.21 11.18 -17.55 -0.20 1.01 16 24 N -0.49 -6.55 10.36 -13.25 -0.14 -6.69 16 25 C 0.13 1.58 10.88 -17.55 -0.19 1.39 16 26 H 0.09 1.06 7.84 -52.49 -0.41 0.65 16 27 H 0.10 1.25 8.06 -52.49 -0.42 0.82 16 28 H 0.12 2.27 6.91 -52.49 -0.36 1.91 16 29 H 0.12 1.91 7.38 -51.93 -0.38 1.53 16 30 H 0.07 0.82 6.13 -51.93 -0.32 0.51 16 31 H 0.04 1.11 7.73 -51.93 -0.40 0.71 16 32 H 0.03 0.68 6.42 -51.93 -0.33 0.35 16 33 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.11 1.09 6.27 -51.93 -0.33 0.77 16 35 H 0.11 0.95 8.12 -51.93 -0.42 0.53 16 36 H 0.15 1.74 8.06 -52.48 -0.42 1.32 16 37 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 38 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.16 1.72 8.06 -52.48 -0.42 1.29 16 LS Contribution 340.71 15.07 5.13 5.13 Total: -1.00 -30.90 340.71 -6.93 -37.83 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.62 Total: 2.84 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -3.96 Total: -5.77 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 1.53 Total: -54.97 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.90 -6.93 -37.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333704688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.482 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 191.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds