Wall clock time and date at job start Fri Apr 10 2020 20:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50705 * 119.99843 * 2 1 4 4 N 1.46891 * 109.47398 * 124.72385 * 3 2 1 5 5 C 1.46904 * 111.00021 * 69.31255 * 4 3 2 6 6 C 1.50706 * 109.46378 * 74.41167 * 5 4 3 7 7 H 1.08001 * 120.00317 * 4.38943 * 6 5 4 8 8 C 1.37876 * 119.99621 * 184.38739 * 6 5 4 9 9 N 1.31516 * 120.00167 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00152 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47161 * 60.00255 * 10 8 6 12 12 H 1.48499 * 109.47363 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47187 * 300.00501 * 10 8 6 14 14 C 1.38382 * 111.00029 * 305.36409 * 4 3 2 15 15 N 1.31480 * 126.44044 * 105.10313 * 14 4 3 16 16 N 1.28422 * 110.50839 * 179.97438 * 15 14 4 17 17 N 1.28903 * 110.31670 * 359.97438 * 16 15 14 18 18 N 1.35314 * 126.44038 * 284.79172 * 14 4 3 19 19 C 1.46497 * 127.37980 * 0.02562 * 18 14 4 20 20 C 1.50704 * 109.46780 * 266.76147 * 19 18 14 21 21 C 1.38674 * 120.41844 * 94.95798 * 20 19 18 22 22 C 1.38625 * 118.41975 * 179.97438 * 21 20 19 23 23 C 1.38227 * 119.16195 * 0.02562 * 22 21 20 24 24 N 1.31856 * 120.76192 * 0.02562 * 23 22 21 25 25 C 1.31880 * 121.72415 * 359.70278 * 24 23 22 26 26 H 1.08002 * 120.00098 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.99440 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.00633 * 179.72571 * 2 1 3 29 29 H 1.08997 * 109.47254 * 244.72479 * 3 2 1 30 30 H 1.09007 * 109.46997 * 4.72492 * 3 2 1 31 31 H 1.09003 * 109.47319 * 194.40448 * 5 4 3 32 32 H 1.08994 * 109.47270 * 314.41232 * 5 4 3 33 33 H 0.97002 * 120.00374 * 179.97438 * 9 8 6 34 34 H 1.09006 * 109.47313 * 26.76048 * 19 18 14 35 35 H 1.08998 * 109.47224 * 146.75957 * 19 18 14 36 36 H 1.08003 * 120.78896 * 359.97438 * 21 20 19 37 37 H 1.08004 * 120.41721 * 180.02562 * 22 21 20 38 38 H 1.08000 * 119.61888 * 179.97438 * 23 22 21 39 39 H 1.08005 * 119.61723 * 180.31756 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9915 1.3349 1.1382 5 6 4.0887 0.3767 0.9481 6 6 5.0520 0.9136 -0.0791 7 1 4.9064 1.9009 -0.4919 8 6 6.1192 0.1443 -0.4917 9 7 6.2963 -1.0581 0.0107 10 14 7.3128 0.8094 -1.7654 11 1 7.9436 2.0517 -1.2515 12 1 8.3636 -0.2044 -2.0360 13 1 6.5799 1.1095 -3.0216 14 6 2.3255 1.0963 2.3275 15 7 2.3521 -0.0160 3.0281 16 7 1.6240 0.0972 4.0798 17 7 1.0881 1.2685 4.1293 18 7 1.5290 1.9660 2.9911 19 6 1.1957 3.3392 2.6049 20 6 2.1591 4.2937 3.2621 21 6 3.2872 4.7305 2.5842 22 6 4.1451 5.6087 3.2280 23 6 3.8499 6.0165 4.5153 24 7 2.7681 5.5797 5.1298 25 6 1.9272 4.7481 4.5463 26 1 -0.5400 0.9353 0.0004 27 1 -0.5399 -0.9354 -0.0004 28 1 1.8501 -0.9352 0.0045 29 1 2.6252 1.4005 -0.9292 30 1 1.3581 2.1319 0.0847 31 1 4.6106 0.2295 1.8937 32 1 3.6843 -0.5753 0.6043 33 1 7.0469 -1.5995 -0.2799 34 1 1.2668 3.4395 1.5218 35 1 0.1798 3.5703 2.9251 36 1 3.4926 4.3944 1.5785 37 1 5.0329 5.9696 2.7300 38 1 4.5134 6.7002 5.0240 39 1 1.0487 4.4158 5.0795 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333704688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:07 Heat of formation + Delta-G solvation = 171.987769 kcal Electronic energy + Delta-G solvation = -24367.611905 eV Core-core repulsion = 20927.470302 eV Total energy + Delta-G solvation = -3440.141603 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.139 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.97555 -41.14393 -39.40066 -36.63262 -34.99109 -34.23830 -33.49397 -32.56879 -32.10606 -29.25146 -28.50180 -26.77845 -24.97375 -24.49138 -24.34813 -22.88270 -22.24739 -20.84940 -18.68448 -18.24208 -18.08105 -17.72132 -17.60509 -17.34117 -16.70174 -16.16417 -15.83575 -15.42855 -15.23078 -14.84237 -14.63912 -14.51413 -14.23834 -13.99916 -13.74174 -13.40635 -13.31527 -12.90831 -12.85526 -12.66470 -12.56326 -12.35587 -12.10259 -11.94520 -11.61143 -11.49153 -11.30206 -10.85613 -10.60531 -10.52342 -10.46567 -10.12736 -9.64374 -8.19009 -6.31943 -0.18908 0.07248 0.28138 0.92745 1.20020 1.34776 1.47302 1.49340 1.57184 2.39283 2.69561 2.88903 3.15238 3.25146 3.37579 3.62028 3.64876 3.88453 3.94557 4.00726 4.04490 4.13527 4.27491 4.33213 4.45733 4.49992 4.65160 4.71652 4.80008 4.88480 4.89186 5.15508 5.16576 5.22197 5.26880 5.54008 5.55818 5.68486 5.69027 5.81567 5.94062 6.27443 6.81297 6.92638 7.37546 7.53261 8.91853 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.011645 B = 0.005819 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.926408 B = 4810.518578 C = 6237.298469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.205 4.205 3 C 0.091 3.909 4 N -0.441 5.441 5 C 0.226 3.774 6 C -0.524 4.524 7 H 0.083 0.917 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.971 3.029 11 H -0.266 1.266 12 H -0.293 1.293 13 H -0.260 1.260 14 C 0.440 3.560 15 N -0.392 5.392 16 N -0.063 5.063 17 N -0.093 5.093 18 N -0.368 5.368 19 C 0.169 3.831 20 C -0.177 4.177 21 C -0.050 4.050 22 C -0.177 4.177 23 C 0.100 3.900 24 N -0.515 5.515 25 C 0.115 3.885 26 H 0.123 0.877 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.112 0.888 31 H -0.005 1.005 32 H -0.003 1.003 33 H 0.264 0.736 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.150 0.850 37 H 0.160 0.840 38 H 0.181 0.819 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.573 15.147 -0.323 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.225 4.225 3 C -0.034 4.034 4 N -0.165 5.165 5 C 0.101 3.899 6 C -0.562 4.562 7 H 0.101 0.899 8 C -0.192 4.192 9 N -0.572 5.572 10 Si 0.795 3.205 11 H -0.191 1.191 12 H -0.219 1.219 13 H -0.184 1.184 14 C 0.074 3.926 15 N -0.250 5.250 16 N -0.059 5.059 17 N -0.081 5.081 18 N -0.168 5.168 19 C 0.048 3.952 20 C -0.181 4.181 21 C -0.077 4.077 22 C -0.196 4.196 23 C -0.057 4.057 24 N -0.224 5.224 25 C -0.043 4.043 26 H 0.141 0.859 27 H 0.119 0.881 28 H 0.100 0.900 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.013 0.987 32 H 0.015 0.985 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.162 0.838 36 H 0.168 0.832 37 H 0.178 0.822 38 H 0.198 0.802 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.783 14.975 1.612 18.524 hybrid contribution 1.147 -0.830 -1.765 2.263 sum -9.636 14.144 -0.153 17.116 Atomic orbital electron populations 1.23987 0.94698 1.03140 0.98334 1.23517 0.97339 0.99396 1.02207 1.21607 0.93724 0.95160 0.92957 1.59462 1.08998 1.50928 0.97133 1.19406 0.86000 0.88484 0.95993 1.21318 1.09457 1.02607 1.22854 0.89940 1.25903 0.99734 0.94817 0.98778 1.70128 1.31153 1.11152 1.44723 0.85411 0.77983 0.77852 0.79231 1.19127 1.21873 1.18422 1.23500 0.88986 0.85035 0.95042 1.74987 1.22806 1.22015 1.05211 1.77829 1.04563 1.11085 1.12439 1.82265 1.20784 1.01285 1.03739 1.51652 1.35318 1.13638 1.16165 1.21157 1.00039 0.71818 1.02145 1.20901 0.98861 1.01075 0.97223 1.21942 0.91626 0.92966 1.01143 1.22499 1.01507 0.98926 0.96712 1.23341 0.93305 0.96641 0.92382 1.67763 1.04864 1.12066 1.37741 1.22934 0.98056 0.91888 0.91401 0.85906 0.88143 0.90015 0.87120 0.87006 0.98707 0.98490 0.92701 0.84629 0.83770 0.83247 0.82200 0.80165 0.81703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 14.32 67.78 0.97 -3.12 16 2 C -0.20 -6.54 8.06 25.65 0.21 -6.34 16 3 C 0.09 2.70 5.62 85.56 0.48 3.19 16 4 N -0.44 -16.53 4.65 -715.77 -3.33 -19.86 16 5 C 0.23 11.23 4.14 85.56 0.35 11.58 16 6 C -0.52 -26.38 8.49 25.60 0.22 -26.16 16 7 H 0.08 3.79 7.81 -2.91 -0.02 3.77 16 8 C 0.01 0.36 5.46 84.65 0.46 0.82 16 9 N -0.93 -54.24 13.29 21.45 0.28 -53.96 16 10 Si 0.97 40.71 29.54 68.60 2.03 42.73 16 11 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 12 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 13 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 14 C 0.44 16.61 5.82 260.64 1.52 18.13 16 15 N -0.39 -17.53 11.28 -58.69 -0.66 -18.19 16 16 N -0.06 -2.64 13.38 37.02 0.50 -2.14 16 17 N -0.09 -3.27 13.93 37.02 0.52 -2.76 16 18 N -0.37 -11.13 3.67 -353.35 -1.30 -12.43 16 19 C 0.17 3.27 6.66 85.63 0.57 3.84 16 20 C -0.18 -3.90 5.48 -19.77 -0.11 -4.01 16 21 C -0.05 -1.11 9.84 22.47 0.22 -0.89 16 22 C -0.18 -3.57 10.11 22.36 0.23 -3.34 16 23 C 0.10 2.09 11.18 84.69 0.95 3.03 16 24 N -0.52 -12.96 10.36 -195.85 -2.03 -14.99 16 25 C 0.11 2.67 10.88 84.67 0.92 3.59 16 26 H 0.12 2.28 7.84 -2.91 -0.02 2.26 16 27 H 0.10 2.41 8.06 -2.91 -0.02 2.39 16 28 H 0.08 3.26 6.91 -2.91 -0.02 3.24 16 29 H 0.11 3.45 7.38 -2.39 -0.02 3.43 16 30 H 0.11 2.29 6.13 -2.38 -0.01 2.28 16 31 H -0.01 -0.31 7.73 -2.39 -0.02 -0.32 16 32 H 0.00 -0.16 6.42 -2.39 -0.02 -0.17 16 33 H 0.26 14.64 8.31 -92.71 -0.77 13.86 16 34 H 0.14 2.02 6.27 -2.38 -0.01 2.00 16 35 H 0.14 1.85 8.12 -2.39 -0.02 1.83 16 36 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 37 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 38 H 0.18 2.65 8.06 -2.91 -0.02 2.62 16 39 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -70.48 340.71 4.06 -66.42 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 1.07 Total: 14.83 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 6.99 Total: 0.34 kcal Atomic # 7 Polarization: -118.30 SS G_CDS: -6.02 Total: -124.32 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.73 kcal Total: -70.48 4.06 -66.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333704688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.410 kcal (2) G-P(sol) polarization free energy of solvation -70.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds