Wall clock time and date at job start Fri Apr 10 2020 20:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32866 * 1 3 3 C 1.47125 * 120.00302 * 2 1 4 4 C 1.32862 * 119.99920 * 179.97438 * 3 2 1 5 5 C 1.50707 * 119.99724 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47258 * 124.72468 * 5 4 3 7 7 O 1.45203 * 109.46770 * 179.97438 * 6 5 4 8 8 C 1.34235 * 116.99460 * 179.97438 * 7 6 5 9 9 O 1.20821 * 120.00184 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.99841 * 179.97438 * 8 7 6 11 11 C 1.52997 * 109.47342 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.46792 * 55.00113 * 11 10 8 13 13 C 1.50703 * 109.47145 * 295.00136 * 11 10 8 14 14 H 1.08002 * 119.99838 * 325.83839 * 13 11 10 15 15 C 1.37871 * 119.99884 * 145.83163 * 13 11 10 16 16 N 1.31513 * 120.00018 * 6.12415 * 15 13 11 17 17 Si 1.86798 * 119.99935 * 186.11689 * 15 13 11 18 18 H 1.48497 * 109.47460 * 60.00190 * 17 15 13 19 19 H 1.48505 * 109.47135 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47261 * 300.00019 * 17 15 13 21 21 C 1.50703 * 109.47042 * 175.00154 * 11 10 8 22 22 C 1.38230 * 119.99977 * 63.46508 * 21 11 10 23 23 C 1.38237 * 119.99915 * 179.78383 * 22 21 11 24 24 C 1.38235 * 119.99940 * 0.44470 * 23 22 21 25 25 C 1.38241 * 119.99914 * 359.81110 * 24 23 22 26 26 C 1.38230 * 119.99890 * 359.97438 * 25 24 23 27 27 H 1.08006 * 119.99545 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00484 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99988 * 179.97438 * 2 1 3 30 30 H 1.08001 * 119.99704 * 0.02562 * 3 2 1 31 31 H 1.07998 * 120.00360 * 359.72134 * 4 3 2 32 32 H 1.09004 * 109.46552 * 244.72013 * 5 4 3 33 33 H 1.08996 * 109.46847 * 4.71878 * 5 4 3 34 34 H 1.09000 * 109.47358 * 299.99593 * 6 5 4 35 35 H 1.09001 * 109.46988 * 59.99758 * 6 5 4 36 36 H 1.09000 * 109.47000 * 300.00160 * 10 8 7 37 37 H 1.09005 * 109.47060 * 59.99976 * 10 8 7 38 38 H 0.97008 * 119.99893 * 180.02562 * 16 15 13 39 39 H 1.07999 * 120.00368 * 359.97438 * 22 21 11 40 40 H 1.07999 * 120.00426 * 180.27647 * 23 22 21 41 41 H 1.07993 * 120.00079 * 179.83145 * 24 23 22 42 42 H 1.07995 * 119.99944 * 179.97438 * 25 24 23 43 43 H 1.08003 * 119.99989 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2741 0.0000 4 6 3.3930 1.2740 0.0005 5 6 4.1465 2.5792 0.0011 6 6 5.1127 2.6097 1.1870 7 8 5.8391 3.8670 1.1872 8 6 6.7331 4.0541 2.1708 9 8 6.9034 3.1956 3.0038 10 6 7.5253 5.3344 2.2356 11 6 8.4654 5.2921 3.4419 12 1 9.0873 4.3985 3.3866 13 6 7.6532 5.2612 4.7109 14 1 6.7143 5.7922 4.7641 15 6 8.1087 4.5549 5.8039 16 7 9.3050 4.0090 5.7820 17 14 7.0268 4.3738 7.3158 18 1 5.7662 3.6833 6.9427 19 1 7.7427 3.5765 8.3441 20 1 6.7118 5.7178 7.8631 21 6 9.3439 6.5166 3.4373 22 6 8.7808 7.7717 3.5729 23 6 9.5870 8.8946 3.5733 24 6 10.9554 8.7630 3.4287 25 6 11.5181 7.5081 3.2878 26 6 10.7123 6.3850 3.2920 27 1 -0.5400 0.9354 0.0004 28 1 -0.5401 -0.9352 0.0004 29 1 1.8687 -0.9353 0.0004 30 1 1.5244 2.2094 0.0004 31 1 3.9330 0.3387 0.0055 32 1 4.7086 2.6745 -0.9280 33 1 3.4412 3.4058 0.0855 34 1 4.5507 2.5144 2.1161 35 1 5.8180 1.7830 1.1025 36 1 8.1107 5.4460 1.3229 37 1 6.8434 6.1789 2.3353 38 1 9.6253 3.5117 6.5509 39 1 7.7112 7.8748 3.6817 40 1 9.1475 9.8749 3.6837 41 1 11.5850 9.6404 3.4263 42 1 12.5871 7.4053 3.1745 43 1 11.1518 5.4046 3.1814 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333945085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:11 Heat of formation + Delta-G solvation = -43.239573 kcal Electronic energy + Delta-G solvation = -22988.993586 eV Core-core repulsion = 19578.473866 eV Total energy + Delta-G solvation = -3410.519720 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.71646 -38.35974 -36.66542 -35.68075 -34.02475 -33.03305 -31.52899 -30.01940 -29.36765 -28.54234 -25.79918 -23.75575 -22.70179 -21.64868 -20.65617 -20.53359 -19.83839 -19.21103 -16.94131 -16.62216 -16.17387 -15.81870 -15.57024 -15.24537 -14.52147 -14.44020 -14.12908 -13.92520 -13.79379 -12.99783 -12.77039 -12.49104 -12.44573 -12.35336 -12.07176 -11.87822 -11.71761 -11.62820 -11.25311 -11.23451 -11.04473 -10.87654 -10.75769 -10.62398 -10.27757 -10.10641 -10.04410 -9.57017 -9.41857 -9.07570 -8.54979 -8.40809 -8.05038 -7.63876 -5.98971 -3.99985 1.12746 2.28260 2.32489 2.84227 3.17557 3.34954 3.36436 3.40091 3.43799 4.47783 4.56892 4.73599 4.78424 4.94942 5.12511 5.18967 5.29213 5.38369 5.48572 5.53518 5.66128 5.72045 5.73821 5.80388 5.83334 6.02851 6.07868 6.10898 6.12805 6.27042 6.30467 6.40259 6.46478 6.50010 6.67539 6.72041 6.88356 6.99711 7.17801 7.30532 7.39972 7.49876 7.80208 7.92070 8.00579 8.30720 8.71609 9.00154 9.63014 11.10899 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.003183 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.592445 B = 8794.472606 C =10016.551003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.126 4.126 3 C -0.138 4.138 4 C -0.133 4.133 5 C -0.091 4.091 6 C 0.071 3.929 7 O -0.376 6.376 8 C 0.456 3.544 9 O -0.467 6.467 10 C -0.095 4.095 11 C 0.077 3.923 12 H 0.073 0.927 13 C -0.502 4.502 14 H 0.052 0.948 15 C 0.080 3.920 16 N -0.880 5.880 17 Si 0.887 3.113 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.022 4.022 22 C -0.114 4.114 23 C -0.131 4.131 24 C -0.154 4.154 25 C -0.128 4.128 26 C -0.117 4.117 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.261 0.739 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.163 -0.927 -12.033 14.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.144 4.144 3 C -0.156 4.156 4 C -0.151 4.151 5 C -0.128 4.128 6 C -0.004 4.004 7 O -0.295 6.295 8 C 0.297 3.703 9 O -0.349 6.349 10 C -0.132 4.132 11 C 0.058 3.942 12 H 0.092 0.908 13 C -0.539 4.539 14 H 0.070 0.930 15 C -0.124 4.124 16 N -0.516 5.516 17 Si 0.715 3.285 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.023 4.023 22 C -0.132 4.132 23 C -0.149 4.149 24 C -0.172 4.172 25 C -0.146 4.146 26 C -0.135 4.135 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.071 0.929 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.988 -1.351 -11.640 14.182 hybrid contribution -0.563 -0.289 1.193 1.351 sum -8.551 -1.640 -10.447 13.600 Atomic orbital electron populations 1.24349 0.95637 1.01944 1.00220 1.22010 0.95495 0.96728 1.00177 1.21963 0.94617 0.96895 1.02088 1.23263 0.94942 0.98296 0.98627 1.20628 0.97905 0.95738 0.98535 1.22750 0.93882 0.85055 0.98689 1.86494 1.51754 1.39574 1.51698 1.23978 0.77941 0.90360 0.78063 1.90719 1.63159 1.43883 1.37160 1.21615 0.98106 0.91742 1.01785 1.17905 0.92244 0.92858 0.91212 0.90835 1.20692 1.05058 1.31588 0.96567 0.92959 1.24813 0.94583 0.94636 0.98349 1.69901 1.16671 1.34579 1.30472 0.86740 0.81024 0.78052 0.82653 1.20260 1.21324 1.20366 1.20619 0.94037 0.95851 0.91764 1.20955 0.99537 0.92166 1.00565 1.20978 0.93907 0.97985 1.02063 1.20809 0.95001 0.96693 1.04702 1.20980 0.98739 0.93063 1.01828 1.21076 0.93869 0.97837 1.00759 0.88360 0.88195 0.86988 0.86716 0.86717 0.89706 0.90392 0.91469 0.91596 0.90422 0.89372 0.92947 0.86805 0.87593 0.87759 0.87586 0.86790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 14.43 28.88 0.42 -1.02 16 2 C -0.13 -1.11 9.83 -37.83 -0.37 -1.49 16 3 C -0.14 -1.32 9.44 -37.83 -0.36 -1.68 16 4 C -0.13 -1.33 9.22 -36.16 -0.33 -1.66 16 5 C -0.09 -1.00 6.04 -27.88 -0.17 -1.17 16 6 C 0.07 1.04 5.45 37.16 0.20 1.24 16 7 O -0.38 -6.55 10.22 -39.27 -0.40 -6.96 16 8 C 0.46 9.44 7.71 36.01 0.28 9.72 16 9 O -0.47 -11.51 14.73 -18.75 -0.28 -11.78 16 10 C -0.09 -1.86 5.06 -27.89 -0.14 -2.00 16 11 C 0.08 1.81 1.67 -92.92 -0.16 1.65 16 12 H 0.07 1.98 6.98 -51.93 -0.36 1.61 16 13 C -0.50 -13.34 6.37 -34.44 -0.22 -13.56 16 14 H 0.05 1.38 7.82 -52.49 -0.41 0.97 16 15 C 0.08 2.23 5.45 -17.82 -0.10 2.14 16 16 N -0.88 -25.52 12.87 55.43 0.71 -24.81 16 17 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 21 C -0.02 -0.48 4.77 -104.62 -0.50 -0.98 16 22 C -0.11 -2.29 8.86 -39.58 -0.35 -2.64 16 23 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 24 C -0.15 -2.65 10.05 -39.58 -0.40 -3.05 16 25 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 26 C -0.12 -2.44 9.67 -39.58 -0.38 -2.83 16 27 H 0.10 0.70 8.05 -52.48 -0.42 0.28 16 28 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 29 H 0.11 0.89 8.06 -52.49 -0.42 0.46 16 30 H 0.11 1.02 7.87 -52.49 -0.41 0.61 16 31 H 0.11 1.05 8.05 -52.49 -0.42 0.63 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.82 7.82 -51.93 -0.41 0.42 16 34 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 35 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.09 1.61 7.78 -51.93 -0.40 1.20 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.11 2.19 7.76 -52.49 -0.41 1.78 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 41 H 0.10 1.50 8.06 -52.49 -0.42 1.07 16 42 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.11 2.38 7.95 -52.48 -0.42 1.97 16 LS Contribution 374.03 15.07 5.64 5.64 Total: -1.00 -30.82 374.03 -9.33 -40.15 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.60 Total: 3.54 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -3.37 Total: -22.78 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.71 Total: -24.81 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.68 Total: -18.74 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.82 -9.33 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333945085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.091 kcal (2) G-P(sol) polarization free energy of solvation -30.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds