Wall clock time and date at job start Fri Apr 10 2020 20:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32866 * 1 3 3 C 1.47125 * 120.00302 * 2 1 4 4 C 1.32862 * 119.99920 * 179.97438 * 3 2 1 5 5 C 1.50707 * 119.99724 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47258 * 124.72468 * 5 4 3 7 7 O 1.45203 * 109.46770 * 179.97438 * 6 5 4 8 8 C 1.34235 * 116.99460 * 179.97438 * 7 6 5 9 9 O 1.20821 * 120.00184 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.99841 * 179.97438 * 8 7 6 11 11 C 1.52997 * 109.47342 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.46792 * 55.00113 * 11 10 8 13 13 C 1.50703 * 109.47145 * 295.00136 * 11 10 8 14 14 H 1.08002 * 119.99838 * 325.83839 * 13 11 10 15 15 C 1.37871 * 119.99884 * 145.83163 * 13 11 10 16 16 N 1.31513 * 120.00018 * 6.12415 * 15 13 11 17 17 Si 1.86798 * 119.99935 * 186.11689 * 15 13 11 18 18 H 1.48497 * 109.47460 * 60.00190 * 17 15 13 19 19 H 1.48505 * 109.47135 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47261 * 300.00019 * 17 15 13 21 21 C 1.50703 * 109.47042 * 175.00154 * 11 10 8 22 22 C 1.38230 * 119.99977 * 63.46508 * 21 11 10 23 23 C 1.38237 * 119.99915 * 179.78383 * 22 21 11 24 24 C 1.38235 * 119.99940 * 0.44470 * 23 22 21 25 25 C 1.38241 * 119.99914 * 359.81110 * 24 23 22 26 26 C 1.38230 * 119.99890 * 359.97438 * 25 24 23 27 27 H 1.08006 * 119.99545 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00484 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99988 * 179.97438 * 2 1 3 30 30 H 1.08001 * 119.99704 * 0.02562 * 3 2 1 31 31 H 1.07998 * 120.00360 * 359.72134 * 4 3 2 32 32 H 1.09004 * 109.46552 * 244.72013 * 5 4 3 33 33 H 1.08996 * 109.46847 * 4.71878 * 5 4 3 34 34 H 1.09000 * 109.47358 * 299.99593 * 6 5 4 35 35 H 1.09001 * 109.46988 * 59.99758 * 6 5 4 36 36 H 1.09000 * 109.47000 * 300.00160 * 10 8 7 37 37 H 1.09005 * 109.47060 * 59.99976 * 10 8 7 38 38 H 0.97008 * 119.99893 * 180.02562 * 16 15 13 39 39 H 1.07999 * 120.00368 * 359.97438 * 22 21 11 40 40 H 1.07999 * 120.00426 * 180.27647 * 23 22 21 41 41 H 1.07993 * 120.00079 * 179.83145 * 24 23 22 42 42 H 1.07995 * 119.99944 * 179.97438 * 25 24 23 43 43 H 1.08003 * 119.99989 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2741 0.0000 4 6 3.3930 1.2740 0.0005 5 6 4.1465 2.5792 0.0011 6 6 5.1127 2.6097 1.1870 7 8 5.8391 3.8670 1.1872 8 6 6.7331 4.0541 2.1708 9 8 6.9034 3.1956 3.0038 10 6 7.5253 5.3344 2.2356 11 6 8.4654 5.2921 3.4419 12 1 9.0873 4.3985 3.3866 13 6 7.6532 5.2612 4.7109 14 1 6.7143 5.7922 4.7641 15 6 8.1087 4.5549 5.8039 16 7 9.3050 4.0090 5.7820 17 14 7.0268 4.3738 7.3158 18 1 5.7662 3.6833 6.9427 19 1 7.7427 3.5765 8.3441 20 1 6.7118 5.7178 7.8631 21 6 9.3439 6.5166 3.4373 22 6 8.7808 7.7717 3.5729 23 6 9.5870 8.8946 3.5733 24 6 10.9554 8.7630 3.4287 25 6 11.5181 7.5081 3.2878 26 6 10.7123 6.3850 3.2920 27 1 -0.5400 0.9354 0.0004 28 1 -0.5401 -0.9352 0.0004 29 1 1.8687 -0.9353 0.0004 30 1 1.5244 2.2094 0.0004 31 1 3.9330 0.3387 0.0055 32 1 4.7086 2.6745 -0.9280 33 1 3.4412 3.4058 0.0855 34 1 4.5507 2.5144 2.1161 35 1 5.8180 1.7830 1.1025 36 1 8.1107 5.4460 1.3229 37 1 6.8434 6.1789 2.3353 38 1 9.6253 3.5117 6.5509 39 1 7.7112 7.8748 3.6817 40 1 9.1475 9.8749 3.6837 41 1 11.5850 9.6404 3.4263 42 1 12.5871 7.4053 3.1745 43 1 11.1518 5.4046 3.1814 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333945085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:10 Heat of formation + Delta-G solvation = -56.710535 kcal Electronic energy + Delta-G solvation = -22989.577731 eV Core-core repulsion = 19578.473866 eV Total energy + Delta-G solvation = -3411.103865 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.32358 -39.87246 -37.88275 -36.80392 -35.82028 -33.92705 -33.44908 -31.49336 -30.71777 -29.67381 -27.65960 -25.15329 -24.11519 -23.13958 -22.08829 -21.42000 -20.90666 -20.52987 -18.60999 -18.45151 -17.55479 -17.33625 -16.98823 -16.43013 -16.24110 -15.63199 -15.48929 -15.25806 -15.08161 -14.46430 -14.30893 -13.97441 -13.75514 -13.63480 -13.30931 -13.21279 -13.11555 -12.93194 -12.81149 -12.57676 -12.54596 -12.35195 -11.95852 -11.83426 -11.82854 -11.71791 -11.42847 -11.37463 -11.18634 -10.96651 -10.47389 -9.52851 -9.26974 -9.20295 -8.08020 -6.12034 0.41512 0.79276 0.83610 1.35501 1.39435 1.43809 1.51680 1.84397 2.22479 2.43856 3.17593 3.33624 3.75625 3.92677 4.03031 4.11793 4.20693 4.25073 4.35446 4.37243 4.39360 4.46997 4.53059 4.56618 4.64631 4.72639 4.81600 4.85678 4.91825 4.96272 5.02568 5.18273 5.37158 5.40239 5.49745 5.59761 5.62128 5.62417 5.75044 5.75876 5.85090 5.94871 5.97613 6.14004 6.38060 6.46569 6.95453 7.09604 7.51991 9.01212 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.003183 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.592445 B = 8794.472606 C =10016.551003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.151 4.151 3 C -0.132 4.132 4 C -0.149 4.149 5 C -0.078 4.078 6 C 0.065 3.935 7 O -0.366 6.366 8 C 0.459 3.541 9 O -0.515 6.515 10 C -0.091 4.091 11 C 0.080 3.920 12 H 0.029 0.971 13 C -0.498 4.498 14 H 0.050 0.950 15 C 0.027 3.973 16 N -0.914 5.914 17 Si 0.935 3.065 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.266 1.266 21 C -0.047 4.047 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.146 4.146 25 C -0.128 4.128 26 C -0.141 4.141 27 H 0.104 0.896 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.256 0.744 39 H 0.117 0.883 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.132 0.868 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.163 1.194 -13.058 15.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C -0.150 4.150 4 C -0.167 4.167 5 C -0.115 4.115 6 C -0.009 4.009 7 O -0.284 6.284 8 C 0.303 3.697 9 O -0.402 6.402 10 C -0.128 4.128 11 C 0.061 3.939 12 H 0.048 0.952 13 C -0.536 4.536 14 H 0.068 0.932 15 C -0.172 4.172 16 N -0.553 5.553 17 Si 0.762 3.238 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.048 4.048 22 C -0.145 4.145 23 C -0.144 4.144 24 C -0.164 4.164 25 C -0.146 4.146 26 C -0.159 4.159 27 H 0.123 0.877 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.064 0.936 39 H 0.135 0.865 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.150 0.850 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.014 0.794 -12.692 15.588 hybrid contribution -0.327 -0.918 1.398 1.704 sum -9.341 -0.124 -11.294 14.657 Atomic orbital electron populations 1.24604 0.95353 1.03057 0.97836 1.22127 0.96098 0.96674 1.01968 1.22149 0.94578 0.97646 1.00626 1.23208 0.95168 0.97921 1.00412 1.20552 0.97169 0.96689 0.97060 1.23036 0.94089 0.83716 1.00028 1.86474 1.50935 1.40893 1.50088 1.24182 0.77832 0.90023 0.77702 1.90706 1.64773 1.45486 1.39210 1.21540 0.98035 0.91912 1.01337 1.17685 0.92292 0.92236 0.91646 0.95216 1.21010 1.04868 1.30235 0.97469 0.93183 1.25477 0.95592 0.95221 1.00951 1.70036 1.18145 1.36242 1.30875 0.85979 0.79298 0.78348 0.80218 1.20815 1.21321 1.19067 1.20450 0.94234 0.95849 0.94222 1.21057 1.00116 0.92150 1.01165 1.21372 0.94147 0.98661 1.00266 1.21277 0.95315 0.97422 1.02369 1.21286 0.99912 0.92685 1.00727 1.21100 0.94063 0.98295 1.02446 0.87732 0.86666 0.86468 0.86095 0.86286 0.88578 0.89710 0.92802 0.91916 0.87734 0.87435 0.93550 0.86546 0.84147 0.83866 0.84974 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 14.43 66.64 0.96 -1.36 16 2 C -0.15 -2.47 9.83 23.43 0.23 -2.24 16 3 C -0.13 -2.39 9.44 23.43 0.22 -2.16 16 4 C -0.15 -2.87 9.22 24.51 0.23 -2.64 16 5 C -0.08 -1.64 6.04 29.85 0.18 -1.46 16 6 C 0.07 1.94 5.45 71.98 0.39 2.33 16 7 O -0.37 -12.72 10.22 -51.47 -0.53 -13.25 16 8 C 0.46 19.45 7.71 71.24 0.55 20.00 16 9 O -0.52 -26.56 14.73 21.98 0.32 -26.23 16 10 C -0.09 -3.59 5.06 29.85 0.15 -3.44 16 11 C 0.08 3.92 1.67 -12.29 -0.02 3.89 16 12 H 0.03 1.69 6.98 -2.39 -0.02 1.68 16 13 C -0.50 -27.14 6.37 25.60 0.16 -26.98 16 14 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 15 C 0.03 1.55 5.45 84.65 0.46 2.01 16 16 N -0.91 -55.38 12.87 21.44 0.28 -55.11 16 17 Si 0.93 46.15 29.54 68.60 2.03 48.17 16 18 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 19 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 C -0.05 -2.08 4.77 -19.87 -0.09 -2.17 16 22 C -0.13 -4.89 8.86 22.27 0.20 -4.70 16 23 C -0.13 -4.07 10.05 22.27 0.22 -3.84 16 24 C -0.15 -4.46 10.05 22.27 0.22 -4.24 16 25 C -0.13 -4.42 10.05 22.27 0.22 -4.19 16 26 C -0.14 -5.94 9.67 22.27 0.22 -5.72 16 27 H 0.10 1.27 8.05 -2.91 -0.02 1.25 16 28 H 0.12 1.19 8.06 -2.91 -0.02 1.17 16 29 H 0.12 1.74 8.06 -2.91 -0.02 1.72 16 30 H 0.12 1.97 7.87 -2.91 -0.02 1.95 16 31 H 0.12 2.15 8.05 -2.91 -0.02 2.12 16 32 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 1.67 7.82 -2.39 -0.02 1.65 16 34 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 35 H 0.06 1.90 8.13 -2.39 -0.02 1.88 16 36 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 37 H 0.11 3.83 7.78 -2.38 -0.02 3.81 16 38 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 39 H 0.12 4.32 7.76 -2.91 -0.02 4.30 16 40 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 41 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 42 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 43 H 0.10 4.26 7.95 -2.91 -0.02 4.24 16 Total: -1.00 -69.06 374.03 7.57 -61.50 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.96 Total: 21.83 kcal Atomic # 6 Polarization: -41.41 SS G_CDS: 4.50 Total: -36.91 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.28 Total: -55.11 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -0.20 Total: -39.48 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -69.06 7.57 -61.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333945085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.785 kcal (2) G-P(sol) polarization free energy of solvation -69.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds